EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000012993 (Gene tree)
Gene ID: -
Gene Symbol: tsr1
Alias: fc52b09|wu:fc52b09|zgc:123319
Full Name: TSR1%2C 20S rRNA accumulation%2C homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 22228 bases
Position: chrNHOQ01001816.1:3916756-3938983
Accession: ZDB-GENE-030131-3762
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000019239	AARP2CN	PF08142.12	2.7e-20	1	1
ENSGAFP00000019254	AARP2CN	PF08142.12	2.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000019437	-	3065	-	ENSGAFP00000019254	834 (aa)	-	-
ENSGAFT00000019422	-	2847	-	ENSGAFP00000019239	815 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000012993's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000012993's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000012993	tsr1	99	54.447	ENSG00000167721	TSR1	99	53.494	Homo_sapiens
ENSGAFG00000012993	tsr1	99	84.450	ENSAPOG00000020891	tsr1	100	84.450	Acanthochromis_polyacanthus
ENSGAFG00000012993	tsr1	99	53.930	ENSAMEG00000007599	TSR1	99	52.969	Ailuropoda_melanoleuca
ENSGAFG00000012993	tsr1	99	81.107	ENSACIG00000007090	tsr1	100	80.505	Amphilophus_citrinellus
ENSGAFG00000012993	tsr1	99	83.654	ENSAOCG00000023284	tsr1	100	84.255	Amphiprion_ocellaris
ENSGAFG00000012993	tsr1	95	83.355	ENSAPEG00000008452	tsr1	100	84.000	Amphiprion_percula
ENSGAFG00000012993	tsr1	99	83.790	ENSATEG00000021961	tsr1	100	82.837	Anabas_testudineus
ENSGAFG00000012993	tsr1	92	57.600	ENSAPLG00000013422	TSR1	98	58.267	Anas_platyrhynchos
ENSGAFG00000012993	tsr1	72	49.502	ENSACAG00000000859	TSR1	93	47.627	Anolis_carolinensis
ENSGAFG00000012993	tsr1	99	54.172	ENSANAG00000031071	TSR1	99	54.051	Aotus_nancymaae
ENSGAFG00000012993	tsr1	100	83.014	ENSACLG00000007595	tsr1	100	84.091	Astatotilapia_calliptera
ENSGAFG00000012993	tsr1	50	72.792	ENSAMXG00000008470	tsr1	89	72.619	Astyanax_mexicanus
ENSGAFG00000012993	tsr1	98	55.301	ENSBTAG00000004225	TSR1	99	55.060	Bos_taurus
ENSGAFG00000012993	tsr1	96	40.295	WBGene00006497	tag-151	96	40.049	Caenorhabditis_elegans
ENSGAFG00000012993	tsr1	66	30.165	WBGene00022021	Y61A9LA.10	51	30.380	Caenorhabditis_elegans
ENSGAFG00000012993	tsr1	99	53.325	ENSCJAG00000012456	TSR1	99	53.204	Callithrix_jacchus
ENSGAFG00000012993	tsr1	99	54.831	ENSCAFG00000002106	-	99	54.502	Canis_familiaris
ENSGAFG00000012993	tsr1	89	52.800	ENSCAFG00000019273	-	100	55.848	Canis_familiaris
ENSGAFG00000012993	tsr1	99	54.831	ENSCAFG00020009728	TSR1	99	54.502	Canis_lupus_dingo
ENSGAFG00000012993	tsr1	99	56.159	ENSCHIG00000023935	TSR1	99	55.596	Capra_hircus
ENSGAFG00000012993	tsr1	99	55.139	ENSTSYG00000005468	TSR1	99	55.168	Carlito_syrichta
ENSGAFG00000012993	tsr1	92	55.339	ENSCPOG00000014833	TSR1	99	54.393	Cavia_porcellus
ENSGAFG00000012993	tsr1	92	53.316	ENSCCAG00000028962	TSR1	98	53.056	Cebus_capucinus
ENSGAFG00000012993	tsr1	99	53.966	ENSCATG00000044262	TSR1	99	53.133	Cercocebus_atys
ENSGAFG00000012993	tsr1	99	55.502	ENSCLAG00000005567	TSR1	99	54.699	Chinchilla_lanigera
ENSGAFG00000012993	tsr1	99	54.087	ENSCSAG00000013788	TSR1	99	53.253	Chlorocebus_sabaeus
ENSGAFG00000012993	tsr1	98	54.523	ENSCPBG00000020363	TSR1	98	53.946	Chrysemys_picta_bellii
ENSGAFG00000012993	tsr1	96	45.466	ENSCING00000020658	-	99	44.975	Ciona_intestinalis
ENSGAFG00000012993	tsr1	96	43.681	ENSCSAVG00000001875	-	100	43.905	Ciona_savignyi
ENSGAFG00000012993	tsr1	97	49.449	ENSCANG00000033056	TSR1	98	50.305	Colobus_angolensis_palliatus
ENSGAFG00000012993	tsr1	99	53.623	ENSCGRG00001023942	Tsr1	99	53.589	Cricetulus_griseus_chok1gshd
ENSGAFG00000012993	tsr1	98	51.815	ENSCGRG00000013015	Tsr1	99	49.818	Cricetulus_griseus_crigri
ENSGAFG00000012993	tsr1	99	77.284	ENSCSEG00000013009	tsr1	100	78.271	Cynoglossus_semilaevis
ENSGAFG00000012993	tsr1	99	88.101	ENSCVAG00000000506	tsr1	100	88.702	Cyprinodon_variegatus
ENSGAFG00000012993	tsr1	99	73.438	ENSDARG00000007744	tsr1	99	73.491	Danio_rerio
ENSGAFG00000012993	tsr1	99	55.381	ENSDNOG00000004715	TSR1	99	56.615	Dasypus_novemcinctus
ENSGAFG00000012993	tsr1	99	54.831	ENSDORG00000016371	-	99	53.819	Dipodomys_ordii
ENSGAFG00000012993	tsr1	95	49.186	ENSDORG00000023234	-	99	48.203	Dipodomys_ordii
ENSGAFG00000012993	tsr1	96	43.995	FBgn0037073	Tsr1	96	43.827	Drosophila_melanogaster
ENSGAFG00000012993	tsr1	89	68.197	ENSETEG00000017534	TSR1	88	67.541	Echinops_telfairi
ENSGAFG00000012993	tsr1	97	50.685	ENSEBUG00000013731	TSR1	98	50.125	Eptatretus_burgeri
ENSGAFG00000012993	tsr1	99	55.865	ENSEASG00005009302	TSR1	97	54.600	Equus_asinus_asinus
ENSGAFG00000012993	tsr1	99	55.811	ENSECAG00000009114	TSR1	99	55.048	Equus_caballus
ENSGAFG00000012993	tsr1	100	75.149	ENSELUG00000020984	tsr1	96	74.881	Esox_lucius
ENSGAFG00000012993	tsr1	99	54.358	ENSFCAG00000006313	TSR1	99	54.513	Felis_catus
ENSGAFG00000012993	tsr1	100	57.788	ENSFALG00000006532	TSR1	100	57.533	Ficedula_albicollis
ENSGAFG00000012993	tsr1	99	54.479	ENSFDAG00000006038	TSR1	99	53.995	Fukomys_damarensis
ENSGAFG00000012993	tsr1	100	87.962	ENSFHEG00000003626	tsr1	100	88.558	Fundulus_heteroclitus
ENSGAFG00000012993	tsr1	99	70.813	ENSGMOG00000010336	tsr1	100	71.976	Gadus_morhua
ENSGAFG00000012993	tsr1	99	80.119	ENSGACG00000010843	tsr1	100	79.286	Gasterosteus_aculeatus
ENSGAFG00000012993	tsr1	98	55.168	ENSGAGG00000025619	-	99	54.177	Gopherus_agassizii
ENSGAFG00000012993	tsr1	99	54.688	ENSGGOG00000001704	TSR1	99	53.735	Gorilla_gorilla
ENSGAFG00000012993	tsr1	100	83.254	ENSHBUG00000017904	tsr1	100	84.569	Haplochromis_burtoni
ENSGAFG00000012993	tsr1	96	48.250	ENSHGLG00000015688	-	98	47.750	Heterocephalus_glaber_female
ENSGAFG00000012993	tsr1	99	54.819	ENSHGLG00000012806	-	99	54.317	Heterocephalus_glaber_female
ENSGAFG00000012993	tsr1	99	54.819	ENSHGLG00100015392	TSR1	99	54.317	Heterocephalus_glaber_male
ENSGAFG00000012993	tsr1	99	77.617	ENSHCOG00000001432	tsr1	100	76.655	Hippocampus_comes
ENSGAFG00000012993	tsr1	99	73.508	ENSIPUG00000004618	tsr1	100	73.389	Ictalurus_punctatus
ENSGAFG00000012993	tsr1	99	55.139	ENSSTOG00000011819	TSR1	99	54.819	Ictidomys_tridecemlineatus
ENSGAFG00000012993	tsr1	93	52.818	ENSJJAG00000019505	Tsr1	96	52.687	Jaculus_jaculus
ENSGAFG00000012993	tsr1	100	84.431	ENSKMAG00000005763	tsr1	100	83.952	Kryptolebias_marmoratus
ENSGAFG00000012993	tsr1	100	81.406	ENSLBEG00000021823	tsr1	100	81.764	Labrus_bergylta
ENSGAFG00000012993	tsr1	99	57.311	ENSLACG00000002197	TSR1	100	56.853	Latimeria_chalumnae
ENSGAFG00000012993	tsr1	90	76.316	ENSLOCG00000006491	TSR1	99	76.316	Lepisosteus_oculatus
ENSGAFG00000012993	tsr1	99	54.207	ENSMFAG00000021330	TSR1	99	53.373	Macaca_fascicularis
ENSGAFG00000012993	tsr1	99	54.087	ENSMMUG00000017519	TSR1	99	53.855	Macaca_mulatta
ENSGAFG00000012993	tsr1	99	54.207	ENSMNEG00000031382	TSR1	99	53.373	Macaca_nemestrina
ENSGAFG00000012993	tsr1	99	53.966	ENSMLEG00000036733	TSR1	99	53.133	Mandrillus_leucophaeus
ENSGAFG00000012993	tsr1	100	81.376	ENSMAMG00000017918	tsr1	100	81.732	Mastacembelus_armatus
ENSGAFG00000012993	tsr1	99	82.572	ENSMZEG00005007477	tsr1	100	82.994	Maylandia_zebra
ENSGAFG00000012993	tsr1	99	57.177	ENSMGAG00000005576	TSR1	99	56.799	Meleagris_gallopavo
ENSGAFG00000012993	tsr1	99	55.932	ENSMICG00000012943	TSR1	99	54.885	Microcebus_murinus
ENSGAFG00000012993	tsr1	99	54.348	ENSMOCG00000022764	Tsr1	99	53.670	Microtus_ochrogaster
ENSGAFG00000012993	tsr1	99	82.233	ENSMMOG00000014280	tsr1	100	81.633	Mola_mola
ENSGAFG00000012993	tsr1	97	56.516	ENSMODG00000010658	TSR1	99	55.704	Monodelphis_domestica
ENSGAFG00000012993	tsr1	99	82.754	ENSMALG00000011681	tsr1	100	82.895	Monopterus_albus
ENSGAFG00000012993	tsr1	99	53.688	MGP_CAROLIEiJ_G0016727	Tsr1	99	53.373	Mus_caroli
ENSGAFG00000012993	tsr1	99	54.293	ENSMUSG00000038335	Tsr1	99	53.976	Mus_musculus
ENSGAFG00000012993	tsr1	99	54.655	MGP_PahariEiJ_G0017864	Tsr1	99	54.337	Mus_pahari
ENSGAFG00000012993	tsr1	99	54.414	MGP_SPRETEiJ_G0017570	Tsr1	99	54.096	Mus_spretus
ENSGAFG00000012993	tsr1	83	56.932	ENSMPUG00000013000	TSR1	100	56.076	Mustela_putorius_furo
ENSGAFG00000012993	tsr1	99	56.106	ENSMLUG00000003505	TSR1	99	55.342	Myotis_lucifugus
ENSGAFG00000012993	tsr1	100	82.557	ENSNBRG00000020728	tsr1	100	84.349	Neolamprologus_brichardi
ENSGAFG00000012993	tsr1	99	50.547	ENSNLEG00000017184	TSR1	99	49.939	Nomascus_leucogenys
ENSGAFG00000012993	tsr1	98	51.257	ENSMEUG00000015828	TSR1	99	51.671	Notamacropus_eugenii
ENSGAFG00000012993	tsr1	99	83.593	ENSONIG00000013131	tsr1	100	82.800	Oreochromis_niloticus
ENSGAFG00000012993	tsr1	99	55.018	ENSOCUG00000014256	TSR1	99	55.127	Oryctolagus_cuniculus
ENSGAFG00000012993	tsr1	100	82.416	ENSORLG00000004926	tsr1	100	82.297	Oryzias_latipes
ENSGAFG00000012993	tsr1	100	82.395	ENSORLG00020008792	tsr1	100	82.156	Oryzias_latipes_hni
ENSGAFG00000012993	tsr1	100	82.656	ENSORLG00015013838	tsr1	100	82.536	Oryzias_latipes_hsok
ENSGAFG00000012993	tsr1	100	82.915	ENSOMEG00000004830	tsr1	100	82.676	Oryzias_melastigma
ENSGAFG00000012993	tsr1	99	54.371	ENSOGAG00000004492	TSR1	99	53.938	Otolemur_garnettii
ENSGAFG00000012993	tsr1	99	56.159	ENSOARG00000015437	TSR1	97	55.596	Ovis_aries
ENSGAFG00000012993	tsr1	99	54.447	ENSPPAG00000036355	TSR1	99	53.494	Pan_paniscus
ENSGAFG00000012993	tsr1	99	53.995	ENSPPRG00000015519	-	99	54.272	Panthera_pardus
ENSGAFG00000012993	tsr1	99	53.995	ENSPTIG00000010608	TSR1	99	54.272	Panthera_tigris_altaica
ENSGAFG00000012993	tsr1	99	54.447	ENSPTRG00000008547	TSR1	99	53.494	Pan_troglodytes
ENSGAFG00000012993	tsr1	99	51.384	ENSPANG00000024463	TSR1	99	51.267	Papio_anubis
ENSGAFG00000012993	tsr1	99	71.223	ENSPKIG00000013972	tsr1	100	71.497	Paramormyrops_kingsleyae
ENSGAFG00000012993	tsr1	89	55.220	ENSPSIG00000018258	TSR1	99	53.908	Pelodiscus_sinensis
ENSGAFG00000012993	tsr1	99	78.434	ENSPMGG00000011577	tsr1	99	78.313	Periophthalmus_magnuspinnatus
ENSGAFG00000012993	tsr1	99	54.051	ENSPEMG00000018033	Tsr1	99	53.133	Peromyscus_maniculatus_bairdii
ENSGAFG00000012993	tsr1	98	55.263	ENSPCIG00000009357	TSR1	97	55.185	Phascolarctos_cinereus
ENSGAFG00000012993	tsr1	99	95.694	ENSPFOG00000004483	TSR1	100	95.694	Poecilia_formosa
ENSGAFG00000012993	tsr1	100	96.663	ENSPLAG00000022320	tsr1	100	96.663	Poecilia_latipinna
ENSGAFG00000012993	tsr1	100	96.782	ENSPMEG00000004577	tsr1	100	96.782	Poecilia_mexicana
ENSGAFG00000012993	tsr1	97	94.363	ENSPREG00000010354	tsr1	99	95.887	Poecilia_reticulata
ENSGAFG00000012993	tsr1	99	50.240	ENSPPYG00000007792	TSR1	99	49.279	Pongo_abelii
ENSGAFG00000012993	tsr1	52	60.465	ENSPCAG00000012973	-	70	66.667	Procavia_capensis
ENSGAFG00000012993	tsr1	99	55.301	ENSPCOG00000017928	TSR1	99	55.060	Propithecus_coquereli
ENSGAFG00000012993	tsr1	99	54.776	ENSPVAG00000002162	TSR1	99	54.524	Pteropus_vampyrus
ENSGAFG00000012993	tsr1	100	83.254	ENSPNYG00000016163	tsr1	100	84.330	Pundamilia_nyererei
ENSGAFG00000012993	tsr1	99	73.421	ENSPNAG00000008659	tsr1	99	73.063	Pygocentrus_nattereri
ENSGAFG00000012993	tsr1	99	53.865	ENSRNOG00000002980	Tsr1	99	53.222	Rattus_norvegicus
ENSGAFG00000012993	tsr1	99	54.447	ENSRBIG00000040016	TSR1	99	53.782	Rhinopithecus_bieti
ENSGAFG00000012993	tsr1	99	54.207	ENSRROG00000030361	TSR1	99	53.541	Rhinopithecus_roxellana
ENSGAFG00000012993	tsr1	99	54.217	ENSSBOG00000020785	TSR1	99	53.855	Saimiri_boliviensis_boliviensis
ENSGAFG00000012993	tsr1	100	54.885	ENSSHAG00000011394	TSR1	99	55.847	Sarcophilus_harrisii
ENSGAFG00000012993	tsr1	99	72.629	ENSSFOG00015005455	tsr1	100	72.115	Scleropages_formosus
ENSGAFG00000012993	tsr1	99	80.479	ENSSMAG00000009504	tsr1	100	81.557	Scophthalmus_maximus
ENSGAFG00000012993	tsr1	100	82.598	ENSSDUG00000012074	tsr1	100	83.671	Seriola_dumerili
ENSGAFG00000012993	tsr1	100	83.751	ENSSLDG00000002031	tsr1	100	84.229	Seriola_lalandi_dorsalis
ENSGAFG00000012993	tsr1	92	56.400	ENSSARG00000000759	TSR1	93	56.400	Sorex_araneus
ENSGAFG00000012993	tsr1	99	55.875	ENSSPUG00000007042	TSR1	99	55.144	Sphenodon_punctatus
ENSGAFG00000012993	tsr1	99	83.652	ENSSPAG00000021951	tsr1	100	84.845	Stegastes_partitus
ENSGAFG00000012993	tsr1	99	55.623	ENSSSCG00000038534	TSR1	99	55.127	Sus_scrofa
ENSGAFG00000012993	tsr1	92	59.495	ENSTGUG00000005883	TSR1	100	59.097	Taeniopygia_guttata
ENSGAFG00000012993	tsr1	99	80.385	ENSTRUG00000004665	tsr1	100	80.288	Takifugu_rubripes
ENSGAFG00000012993	tsr1	99	81.675	ENSTNIG00000016196	tsr1	100	80.947	Tetraodon_nigroviridis
ENSGAFG00000012993	tsr1	66	69.231	ENSTBEG00000015275	-	66	69.231	Tupaia_belangeri
ENSGAFG00000012993	tsr1	99	55.985	ENSTTRG00000001177	TSR1	99	55.301	Tursiops_truncatus
ENSGAFG00000012993	tsr1	99	54.172	ENSUAMG00000025160	TSR1	99	53.735	Ursus_americanus
ENSGAFG00000012993	tsr1	98	52.730	ENSUMAG00000009294	TSR1	99	53.637	Ursus_maritimus
ENSGAFG00000012993	tsr1	83	50.287	ENSVPAG00000000228	TSR1	99	48.575	Vicugna_pacos
ENSGAFG00000012993	tsr1	99	54.831	ENSVVUG00000021767	TSR1	99	54.502	Vulpes_vulpes
ENSGAFG00000012993	tsr1	99	52.788	ENSXETG00000023797	tsr1	100	52.189	Xenopus_tropicalis
ENSGAFG00000012993	tsr1	99	95.678	ENSXCOG00000009635	tsr1	100	95.678	Xiphophorus_couchianus
ENSGAFG00000012993	tsr1	100	97.246	ENSXMAG00000001397	tsr1	97	97.246	Xiphophorus_maculatus