EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000013012 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 15859 bases
Position: chrNHOQ01001000.1:12645131-12660989
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000019266	zf-C2H2	PF00096.26	8.3e-18	1	3
ENSGAFP00000019266	zf-C2H2	PF00096.26	8.3e-18	2	3
ENSGAFP00000019266	zf-C2H2	PF00096.26	8.3e-18	3	3
ENSGAFP00000019268	zf-C2H2	PF00096.26	8.9e-18	1	3
ENSGAFP00000019268	zf-C2H2	PF00096.26	8.9e-18	2	3
ENSGAFP00000019268	zf-C2H2	PF00096.26	8.9e-18	3	3
ENSGAFP00000019266	zf-met	PF12874.7	0.00013	1	2
ENSGAFP00000019266	zf-met	PF12874.7	0.00013	2	2
ENSGAFP00000019268	zf-met	PF12874.7	0.00015	1	2
ENSGAFP00000019268	zf-met	PF12874.7	0.00015	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000019451	-	2785	-	ENSGAFP00000019268	783 (aa)	-	-
ENSGAFT00000019449	-	2667	-	ENSGAFP00000019266	765 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000013012's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000013012's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000013012	-	89	39.771	ENSGAFG00000016191	prdm1b	87	39.771

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000013012	-	99	68.112	ENSAPOG00000014135	-	99	68.112	Acanthochromis_polyacanthus
ENSGAFG00000013012	-	99	68.880	ENSACIG00000009747	-	99	68.702	Amphilophus_citrinellus
ENSGAFG00000013012	-	58	55.215	ENSAPEG00000019826	prdm1b	62	67.143	Amphiprion_percula
ENSGAFG00000013012	-	99	66.364	ENSATEG00000014034	-	99	66.364	Anabas_testudineus
ENSGAFG00000013012	-	62	62.400	ENSATEG00000021017	prdm1a	89	43.843	Anabas_testudineus
ENSGAFG00000013012	-	99	39.111	ENSCSEG00000009707	prdm1a	99	41.299	Cynoglossus_semilaevis
ENSGAFG00000013012	-	92	43.984	ENSCVAG00000019081	prdm1a	91	42.943	Cyprinodon_variegatus
ENSGAFG00000013012	-	55	55.215	ENSCVAG00000016746	prdm1b	72	63.889	Cyprinodon_variegatus
ENSGAFG00000013012	-	51	54.310	ENSGACG00000002716	prdm1b	55	54.310	Gasterosteus_aculeatus
ENSGAFG00000013012	-	61	58.904	ENSKMAG00000017597	prdm1a	89	43.520	Kryptolebias_marmoratus
ENSGAFG00000013012	-	100	72.994	ENSKMAG00000016247	-	100	72.994	Kryptolebias_marmoratus
ENSGAFG00000013012	-	61	62.162	ENSKMAG00000011218	prdm1b	75	62.162	Kryptolebias_marmoratus
ENSGAFG00000013012	-	56	54.938	ENSLBEG00000020955	prdm1b	52	65.714	Labrus_bergylta
ENSGAFG00000013012	-	64	53.623	ENSLOCG00000004978	prdm1b	65	53.623	Lepisosteus_oculatus
ENSGAFG00000013012	-	100	65.285	ENSMALG00000000462	-	100	65.285	Monopterus_albus
ENSGAFG00000013012	-	99	67.261	ENSONIG00000014709	-	99	67.261	Oreochromis_niloticus
ENSGAFG00000013012	-	50	58.182	ENSPKIG00000022335	prdm1b	71	53.571	Paramormyrops_kingsleyae
ENSGAFG00000013012	-	87	40.625	ENSPFOG00000003103	prdm1b	98	40.625	Poecilia_formosa
ENSGAFG00000013012	-	89	40.171	ENSPREG00000011327	prdm1b	86	40.171	Poecilia_reticulata
ENSGAFG00000013012	-	67	57.762	ENSPVAG00000011732	PRDM1	93	42.989	Pteropus_vampyrus
ENSGAFG00000013012	-	93	45.539	ENSPNAG00000028442	prdm1a	92	45.254	Pygocentrus_nattereri
ENSGAFG00000013012	-	56	55.952	ENSSFOG00015021896	prdm1b	63	55.952	Scleropages_formosus
ENSGAFG00000013012	-	60	53.988	ENSSMAG00000020467	prdm1b	59	75.510	Scophthalmus_maximus
ENSGAFG00000013012	-	99	65.110	ENSSMAG00000017518	-	99	65.019	Scophthalmus_maximus
ENSGAFG00000013012	-	99	68.101	ENSSDUG00000000524	-	99	68.101	Seriola_dumerili
ENSGAFG00000013012	-	54	56.442	ENSSLDG00000021973	prdm1b	51	67.143	Seriola_lalandi_dorsalis
ENSGAFG00000013012	-	99	68.481	ENSSLDG00000001957	-	99	68.481	Seriola_lalandi_dorsalis
ENSGAFG00000013012	-	55	64.286	ENSSPAG00000000803	prdm1b	74	64.286	Stegastes_partitus
ENSGAFG00000013012	-	99	69.123	ENSSPAG00000009830	-	99	69.123	Stegastes_partitus
ENSGAFG00000013012	-	56	54.601	ENSXCOG00000018920	prdm1b	60	54.601	Xiphophorus_couchianus
ENSGAFG00000013012	-	53	54.601	ENSXMAG00000016765	prdm1b	57	67.188	Xiphophorus_maculatus