EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000013175 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 5483 bases
Position: chrNHOQ01001073.1:810279-815761
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000019502	PPR	PF01535.20	5.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000019685	-	3320	-	ENSGAFP00000019502	694 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000013175's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000013175's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000013175	ptcd1	85	46.721	ENSG00000106246	PTCD1	86	46.721	Homo_sapiens
ENSGAFG00000013175	ptcd1	85	46.721	ENSG00000248919	ATP5MF-PTCD1	80	46.721	Homo_sapiens
ENSGAFG00000013175	ptcd1	88	63.857	ENSAPOG00000010679	ptcd1	96	63.857	Acanthochromis_polyacanthus
ENSGAFG00000013175	ptcd1	83	49.833	ENSAMEG00000006224	-	78	49.833	Ailuropoda_melanoleuca
ENSGAFG00000013175	ptcd1	86	70.792	ENSACIG00000017861	ptcd1	87	71.189	Amphilophus_citrinellus
ENSGAFG00000013175	ptcd1	98	62.894	ENSAOCG00000020741	-	98	62.536	Amphiprion_ocellaris
ENSGAFG00000013175	ptcd1	87	64.309	ENSAOCG00000022617	ptcd1	93	64.309	Amphiprion_ocellaris
ENSGAFG00000013175	ptcd1	99	62.606	ENSAPEG00000022632	ptcd1	98	61.864	Amphiprion_percula
ENSGAFG00000013175	ptcd1	90	67.666	ENSATEG00000007016	ptcd1	91	66.972	Anabas_testudineus
ENSGAFG00000013175	ptcd1	82	48.635	ENSAPLG00000006862	-	91	48.635	Anas_platyrhynchos
ENSGAFG00000013175	ptcd1	83	48.000	ENSACAG00000012871	-	78	48.000	Anolis_carolinensis
ENSGAFG00000013175	ptcd1	82	47.404	ENSANAG00000035790	-	86	47.333	Aotus_nancymaae
ENSGAFG00000013175	ptcd1	90	70.541	ENSACLG00000002824	ptcd1	88	69.874	Astatotilapia_calliptera
ENSGAFG00000013175	ptcd1	83	50.651	ENSAMXG00000037292	ptcd1	86	50.814	Astyanax_mexicanus
ENSGAFG00000013175	ptcd1	84	47.603	ENSBTAG00000020440	-	74	48.264	Bos_taurus
ENSGAFG00000013175	ptcd1	82	47.819	ENSCJAG00000015815	-	84	47.746	Callithrix_jacchus
ENSGAFG00000013175	ptcd1	82	49.832	ENSCAFG00000015055	-	78	49.832	Canis_familiaris
ENSGAFG00000013175	ptcd1	82	49.832	ENSCAFG00020014480	-	78	49.832	Canis_lupus_dingo
ENSGAFG00000013175	ptcd1	89	46.106	ENSCHIG00000027000	-	89	46.729	Capra_hircus
ENSGAFG00000013175	ptcd1	84	46.493	ENSTSYG00000029495	-	86	46.493	Carlito_syrichta
ENSGAFG00000013175	ptcd1	82	46.901	ENSCAPG00000014660	-	90	46.833	Cavia_aperea
ENSGAFG00000013175	ptcd1	82	47.571	ENSCPOG00000001780	-	84	47.500	Cavia_porcellus
ENSGAFG00000013175	ptcd1	82	47.492	ENSCCAG00000034025	-	84	47.421	Cebus_capucinus
ENSGAFG00000013175	ptcd1	82	48.061	ENSCATG00000040859	-	84	47.987	Cercocebus_atys
ENSGAFG00000013175	ptcd1	82	47.475	ENSCLAG00000006354	-	84	48.074	Chinchilla_lanigera
ENSGAFG00000013175	ptcd1	78	47.069	ENSCSAG00000017794	-	82	46.996	Chlorocebus_sabaeus
ENSGAFG00000013175	ptcd1	91	44.131	ENSCPBG00000020866	-	89	44.231	Chrysemys_picta_bellii
ENSGAFG00000013175	ptcd1	84	46.382	ENSCANG00000023441	-	86	46.546	Colobus_angolensis_palliatus
ENSGAFG00000013175	ptcd1	82	47.811	ENSCGRG00001023686	Ptcd1	83	48.316	Cricetulus_griseus_chok1gshd
ENSGAFG00000013175	ptcd1	82	47.811	ENSCGRG00000015031	Ptcd1	83	48.316	Cricetulus_griseus_crigri
ENSGAFG00000013175	ptcd1	94	59.970	ENSCSEG00000002378	ptcd1	93	59.337	Cynoglossus_semilaevis
ENSGAFG00000013175	ptcd1	93	76.080	ENSCVAG00000003621	ptcd1	98	76.161	Cyprinodon_variegatus
ENSGAFG00000013175	ptcd1	99	75.287	ENSCVAG00000015826	ptcd1	99	75.000	Cyprinodon_variegatus
ENSGAFG00000013175	ptcd1	92	48.653	ENSDARG00000076176	ptcd1	93	48.653	Danio_rerio
ENSGAFG00000013175	ptcd1	83	48.500	ENSDNOG00000009957	-	86	47.903	Dasypus_novemcinctus
ENSGAFG00000013175	ptcd1	82	45.833	ENSDORG00000000740	Ptcd1	85	46.269	Dipodomys_ordii
ENSGAFG00000013175	ptcd1	81	38.756	ENSEBUG00000014515	ptcd1	93	38.489	Eptatretus_burgeri
ENSGAFG00000013175	ptcd1	82	48.414	ENSEASG00005002480	-	84	49.016	Equus_asinus_asinus
ENSGAFG00000013175	ptcd1	82	48.414	ENSECAG00000016617	-	84	48.852	Equus_caballus
ENSGAFG00000013175	ptcd1	84	56.774	ENSELUG00000016517	ptcd1	82	56.981	Esox_lucius
ENSGAFG00000013175	ptcd1	83	48.997	ENSFCAG00000015069	-	84	48.997	Felis_catus
ENSGAFG00000013175	ptcd1	85	46.226	ENSFALG00000013803	-	83	47.107	Ficedula_albicollis
ENSGAFG00000013175	ptcd1	82	49.249	ENSFDAG00000006393	-	84	49.336	Fukomys_damarensis
ENSGAFG00000013175	ptcd1	79	79.818	ENSFHEG00000012491	ptcd1	95	79.636	Fundulus_heteroclitus
ENSGAFG00000013175	ptcd1	88	62.903	ENSGMOG00000007639	ptcd1	96	62.810	Gadus_morhua
ENSGAFG00000013175	ptcd1	82	47.776	ENSGALG00000004711	-	84	47.776	Gallus_gallus
ENSGAFG00000013175	ptcd1	90	67.773	ENSGACG00000016607	ptcd1	97	67.823	Gasterosteus_aculeatus
ENSGAFG00000013175	ptcd1	79	47.080	ENSGAGG00000021832	-	85	46.337	Gopherus_agassizii
ENSGAFG00000013175	ptcd1	88	45.000	ENSGGOG00000015123	-	86	46.721	Gorilla_gorilla
ENSGAFG00000013175	ptcd1	90	70.080	ENSHBUG00000018275	ptcd1	88	69.414	Haplochromis_burtoni
ENSGAFG00000013175	ptcd1	82	48.316	ENSHGLG00000017621	-	84	48.744	Heterocephalus_glaber_female
ENSGAFG00000013175	ptcd1	82	48.316	ENSHGLG00100007218	-	84	48.744	Heterocephalus_glaber_male
ENSGAFG00000013175	ptcd1	99	55.282	ENSHCOG00000010784	ptcd1	99	55.202	Hippocampus_comes
ENSGAFG00000013175	ptcd1	84	49.503	ENSSTOG00000001682	-	85	49.587	Ictidomys_tridecemlineatus
ENSGAFG00000013175	ptcd1	82	47.563	ENSJJAG00000000319	Ptcd1	85	47.739	Jaculus_jaculus
ENSGAFG00000013175	ptcd1	93	71.077	ENSKMAG00000008708	ptcd1	92	71.231	Kryptolebias_marmoratus
ENSGAFG00000013175	ptcd1	99	61.517	ENSLBEG00000008061	ptcd1	99	61.517	Labrus_bergylta
ENSGAFG00000013175	ptcd1	85	49.342	ENSLACG00000011172	ptcd1	82	50.169	Latimeria_chalumnae
ENSGAFG00000013175	ptcd1	92	46.862	ENSLOCG00000004833	ptcd1	93	50.839	Lepisosteus_oculatus
ENSGAFG00000013175	ptcd1	82	47.826	ENSLAFG00000002588	-	83	47.826	Loxodonta_africana
ENSGAFG00000013175	ptcd1	82	48.061	ENSMFAG00000041324	-	84	47.987	Macaca_fascicularis
ENSGAFG00000013175	ptcd1	82	47.892	ENSMMUG00000030408	-	84	47.819	Macaca_mulatta
ENSGAFG00000013175	ptcd1	82	48.061	ENSMNEG00000043786	-	84	47.987	Macaca_nemestrina
ENSGAFG00000013175	ptcd1	82	35.567	ENSMLEG00000031179	-	81	36.581	Mandrillus_leucophaeus
ENSGAFG00000013175	ptcd1	95	66.617	ENSMAMG00000007623	ptcd1	91	66.617	Mastacembelus_armatus
ENSGAFG00000013175	ptcd1	90	70.382	ENSMZEG00005012722	ptcd1	88	69.716	Maylandia_zebra
ENSGAFG00000013175	ptcd1	85	45.847	ENSMGAG00000004211	-	75	47.931	Meleagris_gallopavo
ENSGAFG00000013175	ptcd1	82	47.643	ENSMICG00000017428	-	85	47.682	Microcebus_murinus
ENSGAFG00000013175	ptcd1	90	69.592	ENSMMOG00000020243	ptcd1	89	72.539	Mola_mola
ENSGAFG00000013175	ptcd1	85	45.938	ENSMODG00000001350	-	82	46.798	Monodelphis_domestica
ENSGAFG00000013175	ptcd1	97	64.143	ENSMALG00000018442	ptcd1	99	63.384	Monopterus_albus
ENSGAFG00000013175	ptcd1	82	47.306	MGP_CAROLIEiJ_G0028011	Ptcd1	84	47.643	Mus_caroli
ENSGAFG00000013175	ptcd1	82	47.078	ENSMUSG00000029624	Ptcd1	84	47.980	Mus_musculus
ENSGAFG00000013175	ptcd1	82	47.973	MGP_PahariEiJ_G0024580	Ptcd1	84	48.480	Mus_pahari
ENSGAFG00000013175	ptcd1	82	46.745	MGP_SPRETEiJ_G0029012	Ptcd1	84	47.811	Mus_spretus
ENSGAFG00000013175	ptcd1	83	48.744	ENSMPUG00000016518	-	84	49.414	Mustela_putorius_furo
ENSGAFG00000013175	ptcd1	82	49.495	ENSMLUG00000010994	-	78	49.749	Myotis_lucifugus
ENSGAFG00000013175	ptcd1	90	67.402	ENSNBRG00000010079	ptcd1	87	71.022	Neolamprologus_brichardi
ENSGAFG00000013175	ptcd1	72	46.857	ENSNLEG00000011060	-	88	46.857	Nomascus_leucogenys
ENSGAFG00000013175	ptcd1	83	46.141	ENSMEUG00000006930	-	85	46.141	Notamacropus_eugenii
ENSGAFG00000013175	ptcd1	75	60.000	ENSOPRG00000013647	-	76	56.489	Ochotona_princeps
ENSGAFG00000013175	ptcd1	87	68.543	ENSONIG00000003168	ptcd1	100	67.869	Oreochromis_niloticus
ENSGAFG00000013175	ptcd1	78	46.127	ENSOANG00000007728	-	73	46.127	Ornithorhynchus_anatinus
ENSGAFG00000013175	ptcd1	87	46.741	ENSOCUG00000010584	-	83	47.603	Oryctolagus_cuniculus
ENSGAFG00000013175	ptcd1	89	70.400	ENSORLG00000009275	ptcd1	87	72.315	Oryzias_latipes
ENSGAFG00000013175	ptcd1	89	70.560	ENSORLG00020000988	ptcd1	87	72.483	Oryzias_latipes_hni
ENSGAFG00000013175	ptcd1	96	66.127	ENSORLG00015010557	ptcd1	95	67.692	Oryzias_latipes_hsok
ENSGAFG00000013175	ptcd1	96	67.211	ENSOMEG00000020627	ptcd1	95	68.624	Oryzias_melastigma
ENSGAFG00000013175	ptcd1	82	46.387	ENSOGAG00000010877	-	85	46.823	Otolemur_garnettii
ENSGAFG00000013175	ptcd1	84	43.415	ENSOARG00000018676	-	85	44.065	Ovis_aries
ENSGAFG00000013175	ptcd1	85	46.557	ENSPPAG00000036024	-	86	46.557	Pan_paniscus
ENSGAFG00000013175	ptcd1	83	49.164	ENSPPRG00000003478	-	84	49.164	Panthera_pardus
ENSGAFG00000013175	ptcd1	85	46.721	ENSPTRG00000019452	-	86	46.721	Pan_troglodytes
ENSGAFG00000013175	ptcd1	82	48.229	ENSPANG00000016730	-	84	48.154	Papio_anubis
ENSGAFG00000013175	ptcd1	82	51.864	ENSPKIG00000014215	ptcd1	85	51.858	Paramormyrops_kingsleyae
ENSGAFG00000013175	ptcd1	82	45.700	ENSPSIG00000011184	-	98	45.791	Pelodiscus_sinensis
ENSGAFG00000013175	ptcd1	72	40.655	ENSPMAG00000009667	ptcd1	100	40.655	Petromyzon_marinus
ENSGAFG00000013175	ptcd1	83	46.370	ENSPCIG00000024778	-	88	44.801	Phascolarctos_cinereus
ENSGAFG00000013175	ptcd1	100	90.844	ENSPFOG00000004458	ptcd1	99	90.844	Poecilia_formosa
ENSGAFG00000013175	ptcd1	100	90.701	ENSPLAG00000011051	ptcd1	99	90.272	Poecilia_latipinna
ENSGAFG00000013175	ptcd1	100	90.701	ENSPMEG00000020547	ptcd1	99	90.701	Poecilia_mexicana
ENSGAFG00000013175	ptcd1	100	88.429	ENSPREG00000000059	ptcd1	100	88.429	Poecilia_reticulata
ENSGAFG00000013175	ptcd1	84	46.875	ENSPPYG00000017377	-	91	46.875	Pongo_abelii
ENSGAFG00000013175	ptcd1	73	60.484	ENSPCAG00000001852	-	81	60.484	Procavia_capensis
ENSGAFG00000013175	ptcd1	82	48.316	ENSPCOG00000018596	-	85	48.344	Propithecus_coquereli
ENSGAFG00000013175	ptcd1	55	56.491	ENSPVAG00000007529	-	54	61.373	Pteropus_vampyrus
ENSGAFG00000013175	ptcd1	90	70.447	ENSPNYG00000019993	ptcd1	88	69.778	Pundamilia_nyererei
ENSGAFG00000013175	ptcd1	91	49.615	ENSPNAG00000014931	ptcd1	95	50.077	Pygocentrus_nattereri
ENSGAFG00000013175	ptcd1	82	47.811	ENSRNOG00000000987	Ptcd1	85	48.161	Rattus_norvegicus
ENSGAFG00000013175	ptcd1	89	45.696	ENSRBIG00000043393	-	86	47.039	Rhinopithecus_bieti
ENSGAFG00000013175	ptcd1	89	45.540	ENSRROG00000036420	-	86	46.875	Rhinopithecus_roxellana
ENSGAFG00000013175	ptcd1	82	47.892	ENSSBOG00000024114	-	84	47.819	Saimiri_boliviensis_boliviensis
ENSGAFG00000013175	ptcd1	84	47.533	ENSSHAG00000011376	-	92	47.154	Sarcophilus_harrisii
ENSGAFG00000013175	ptcd1	83	52.326	ENSSFOG00015007909	ptcd1	81	52.326	Scleropages_formosus
ENSGAFG00000013175	ptcd1	89	64.476	ENSSMAG00000000218	ptcd1	99	64.476	Scophthalmus_maximus
ENSGAFG00000013175	ptcd1	90	67.767	ENSSDUG00000015671	ptcd1	88	70.744	Seriola_dumerili
ENSGAFG00000013175	ptcd1	90	66.929	ENSSLDG00000014261	ptcd1	86	70.764	Seriola_lalandi_dorsalis
ENSGAFG00000013175	ptcd1	94	43.182	ENSSPUG00000003540	-	89	44.428	Sphenodon_punctatus
ENSGAFG00000013175	ptcd1	90	69.340	ENSSPAG00000011049	ptcd1	88	68.976	Stegastes_partitus
ENSGAFG00000013175	ptcd1	82	49.663	ENSSSCG00000007622	-	89	49.581	Sus_scrofa
ENSGAFG00000013175	ptcd1	82	47.179	ENSTGUG00000007563	-	95	48.034	Taeniopygia_guttata
ENSGAFG00000013175	ptcd1	87	68.473	ENSTRUG00000013471	ptcd1	86	67.834	Takifugu_rubripes
ENSGAFG00000013175	ptcd1	90	65.265	ENSTNIG00000008271	ptcd1	89	66.883	Tetraodon_nigroviridis
ENSGAFG00000013175	ptcd1	88	45.794	ENSTBEG00000011021	-	86	46.840	Tupaia_belangeri
ENSGAFG00000013175	ptcd1	84	47.533	ENSTTRG00000003006	-	85	47.533	Tursiops_truncatus
ENSGAFG00000013175	ptcd1	83	48.752	ENSUAMG00000008049	-	84	48.833	Ursus_americanus
ENSGAFG00000013175	ptcd1	83	49.832	ENSVVUG00000008836	-	84	49.832	Vulpes_vulpes
ENSGAFG00000013175	ptcd1	83	47.746	ENSXETG00000009891	ptcd1	85	47.746	Xenopus_tropicalis
ENSGAFG00000013175	ptcd1	100	92.550	ENSXMAG00000015540	ptcd1	100	92.693	Xiphophorus_maculatus