EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000013839 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 5315 bases
Position: chrNHOQ01002357.1:1662117-1667431
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000020485	zf-C2H2	PF00096.26	5.6e-16	1	4
ENSGAFP00000020485	zf-C2H2	PF00096.26	5.6e-16	2	4
ENSGAFP00000020485	zf-C2H2	PF00096.26	5.6e-16	3	4
ENSGAFP00000020485	zf-C2H2	PF00096.26	5.6e-16	4	4
ENSGAFP00000020488	zf-C2H2	PF00096.26	1.9e-15	1	4
ENSGAFP00000020488	zf-C2H2	PF00096.26	1.9e-15	2	4
ENSGAFP00000020488	zf-C2H2	PF00096.26	1.9e-15	3	4
ENSGAFP00000020488	zf-C2H2	PF00096.26	1.9e-15	4	4
ENSGAFP00000020485	zf-met	PF12874.7	2.2e-06	1	2
ENSGAFP00000020485	zf-met	PF12874.7	2.2e-06	2	2
ENSGAFP00000020488	zf-met	PF12874.7	8.4e-06	1	2
ENSGAFP00000020488	zf-met	PF12874.7	8.4e-06	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000020678	-	4453	-	ENSGAFP00000020488	453 (aa)	-	UPI000DD254B0
ENSGAFT00000020675	-	4151	-	ENSGAFP00000020485	364 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000013839's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000013839's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000013839	-	58	35.664	ENSGAFG00000016322	-	53	47.500
ENSGAFG00000013839	-	58	40.972	ENSGAFG00000011999	-	84	45.098
ENSGAFG00000013839	-	61	55.128	ENSGAFG00000003150	-	81	55.128
ENSGAFG00000013839	-	58	40.506	ENSGAFG00000011940	-	69	40.506
ENSGAFG00000013839	-	53	37.097	ENSGAFG00000011278	-	66	37.097
ENSGAFG00000013839	-	52	51.923	ENSGAFG00000001879	-	68	51.923
ENSGAFG00000013839	-	84	42.029	ENSGAFG00000016976	-	58	42.029
ENSGAFG00000013839	-	58	37.607	ENSGAFG00000011326	-	95	41.727
ENSGAFG00000013839	-	80	41.007	ENSGAFG00000018820	-	73	41.549
ENSGAFG00000013839	-	50	39.161	ENSGAFG00000018645	-	60	39.161
ENSGAFG00000013839	-	50	44.056	ENSGAFG00000011938	-	67	44.056
ENSGAFG00000013839	-	86	38.037	ENSGAFG00000013390	-	65	38.037
ENSGAFG00000013839	-	54	38.356	ENSGAFG00000003108	-	65	43.590
ENSGAFG00000013839	-	59	39.161	ENSGAFG00000012767	-	67	39.161
ENSGAFG00000013839	-	94	40.127	ENSGAFG00000008274	-	97	39.103
ENSGAFG00000013839	-	57	44.068	ENSGAFG00000013055	-	59	44.068
ENSGAFG00000013839	-	57	37.681	ENSGAFG00000013053	-	57	37.681
ENSGAFG00000013839	-	50	35.294	ENSGAFG00000003059	gfi1b	78	35.294
ENSGAFG00000013839	-	63	40.476	ENSGAFG00000012945	-	64	40.698
ENSGAFG00000013839	-	58	40.845	ENSGAFG00000013408	-	89	46.552
ENSGAFG00000013839	-	57	36.111	ENSGAFG00000016595	-	87	36.111
ENSGAFG00000013839	-	60	43.182	ENSGAFG00000011906	-	67	43.182
ENSGAFG00000013839	-	60	35.714	ENSGAFG00000013934	-	98	44.262
ENSGAFG00000013839	-	57	39.855	ENSGAFG00000000037	-	72	38.926
ENSGAFG00000013839	-	56	49.351	ENSGAFG00000008226	-	74	48.101
ENSGAFG00000013839	-	54	39.726	ENSGAFG00000013969	-	92	48.148
ENSGAFG00000013839	-	51	34.940	ENSGAFG00000012953	-	69	35.766
ENSGAFG00000013839	-	58	35.211	ENSGAFG00000013066	-	65	35.211
ENSGAFG00000013839	-	54	44.828	ENSGAFG00000019072	-	83	44.828
ENSGAFG00000013839	-	59	37.589	ENSGAFG00000012069	-	98	37.589
ENSGAFG00000013839	-	58	37.681	ENSGAFG00000014097	-	67	37.681
ENSGAFG00000013839	-	58	35.349	ENSGAFG00000021139	-	88	38.065
ENSGAFG00000013839	-	51	42.857	ENSGAFG00000021132	-	56	42.857
ENSGAFG00000013839	-	64	36.220	ENSGAFG00000012035	-	89	36.220
ENSGAFG00000013839	-	81	44.872	ENSGAFG00000013677	-	84	45.763
ENSGAFG00000013839	-	52	34.848	ENSGAFG00000020509	-	84	34.146
ENSGAFG00000013839	-	90	45.882	ENSGAFG00000001481	-	85	45.882
ENSGAFG00000013839	-	59	53.012	ENSGAFG00000011884	-	90	53.012
ENSGAFG00000013839	-	68	46.774	ENSGAFG00000013911	-	97	46.774
ENSGAFG00000013839	-	59	42.657	ENSGAFG00000001402	-	68	42.657
ENSGAFG00000013839	-	51	37.500	ENSGAFG00000008204	-	63	37.500
ENSGAFG00000013839	-	59	44.366	ENSGAFG00000007098	-	75	44.366
ENSGAFG00000013839	-	52	40.441	ENSGAFG00000007110	-	63	40.441
ENSGAFG00000013839	-	80	41.290	ENSGAFG00000008231	-	64	51.899
ENSGAFG00000013839	-	56	32.215	ENSGAFG00000008457	zbtb41	61	34.043
ENSGAFG00000013839	-	63	42.857	ENSGAFG00000014188	-	97	42.754
ENSGAFG00000013839	-	52	39.437	ENSGAFG00000013605	-	92	39.437
ENSGAFG00000013839	-	61	44.156	ENSGAFG00000013019	-	82	41.935
ENSGAFG00000013839	-	56	31.455	ENSGAFG00000014563	-	58	33.000
ENSGAFG00000013839	-	52	41.772	ENSGAFG00000016981	-	83	50.877
ENSGAFG00000013839	-	84	39.130	ENSGAFG00000011944	-	58	39.437
ENSGAFG00000013839	-	61	40.541	ENSGAFG00000018302	-	73	52.564
ENSGAFG00000013839	-	65	32.000	ENSGAFG00000014369	-	91	39.683
ENSGAFG00000013839	-	50	54.545	ENSGAFG00000011174	-	62	53.750
ENSGAFG00000013839	-	59	39.024	ENSGAFG00000012987	-	66	39.024
ENSGAFG00000013839	-	68	41.429	ENSGAFG00000012934	-	77	41.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000013839	-	99	65.714	ENSATEG00000023773	-	96	65.495	Anabas_testudineus
ENSGAFG00000013839	-	99	52.009	ENSCSEG00000011817	-	96	50.670	Cynoglossus_semilaevis
ENSGAFG00000013839	-	65	39.161	ENSDARG00000098986	znf1040	80	39.007	Danio_rerio
ENSGAFG00000013839	-	63	52.564	ENSDARG00000110229	zgc:173702	81	52.564	Danio_rerio
ENSGAFG00000013839	-	50	40.580	ENSDARG00000096189	si:dkey-54j5.2	73	48.889	Danio_rerio
ENSGAFG00000013839	-	52	38.788	ENSDARG00000116920	BX465848.2	85	38.788	Danio_rerio
ENSGAFG00000013839	-	50	40.361	ENSDARG00000116177	znf1127	88	40.361	Danio_rerio
ENSGAFG00000013839	-	56	40.385	ENSDARG00000091393	si:ch211-161m3.6	64	40.385	Danio_rerio
ENSGAFG00000013839	-	58	48.718	ENSDARG00000091477	znf1066	79	48.718	Danio_rerio
ENSGAFG00000013839	-	51	37.908	ENSDARG00000103721	si:dkey-122c11.7	76	37.908	Danio_rerio
ENSGAFG00000013839	-	61	44.928	ENSFHEG00000021020	-	64	54.878	Fundulus_heteroclitus
ENSGAFG00000013839	-	99	75.278	ENSFHEG00000015400	-	97	74.834	Fundulus_heteroclitus
ENSGAFG00000013839	-	69	32.065	ENSKMAG00000011441	-	75	32.857	Kryptolebias_marmoratus
ENSGAFG00000013839	-	99	63.111	ENSMAMG00000020468	-	99	62.889	Mastacembelus_armatus
ENSGAFG00000013839	-	79	80.000	ENSNBRG00000019881	-	98	80.000	Neolamprologus_brichardi
ENSGAFG00000013839	-	74	51.471	ENSORLG00015013828	-	81	49.804	Oryzias_latipes_hsok
ENSGAFG00000013839	-	99	55.066	ENSOMEG00000005928	-	98	53.761	Oryzias_melastigma
ENSGAFG00000013839	-	51	39.752	ENSPFOG00000003366	-	65	42.254	Poecilia_formosa
ENSGAFG00000013839	-	82	87.171	ENSPFOG00000005998	-	96	88.487	Poecilia_formosa
ENSGAFG00000013839	-	50	32.683	ENSPLAG00000010547	-	51	32.683	Poecilia_latipinna
ENSGAFG00000013839	-	99	89.716	ENSPLAG00000001674	-	98	90.591	Poecilia_latipinna
ENSGAFG00000013839	-	57	38.194	ENSPLAG00000023537	-	66	38.519	Poecilia_latipinna
ENSGAFG00000013839	-	99	89.670	ENSPMEG00000013200	-	97	90.549	Poecilia_mexicana
ENSGAFG00000013839	-	99	62.528	ENSSMAG00000002598	-	99	61.641	Scophthalmus_maximus
ENSGAFG00000013839	-	98	63.636	ENSSDUG00000015456	-	96	63.636	Seriola_dumerili
ENSGAFG00000013839	-	99	66.150	ENSSPAG00000017203	-	96	65.487	Stegastes_partitus
ENSGAFG00000013839	-	70	36.735	ENSXETG00000031310	-	68	40.000	Xenopus_tropicalis
ENSGAFG00000013839	-	54	38.843	ENSXCOG00000003499	-	71	38.843	Xiphophorus_couchianus
ENSGAFG00000013839	-	99	91.739	ENSXMAG00000021195	-	98	91.739	Xiphophorus_maculatus