EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000015266 (Gene tree)
Gene ID: -
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 26844 bases
Position: chrNHOQ01001578.1:257394-284237
Accession: ZDB-GENE-030131-5286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000022609	RNA_pol_Rpb1_5	PF04998.17	2.7e-99	1	1
ENSGAFP00000022609	RNA_pol_Rpb1_4	PF05000.17	2.2e-21	1	1
ENSGAFP00000022609	RNA_pol_Rpb1_2	PF00623.20	2.8e-68	1	1
ENSGAFP00000022609	RNA_pol_Rpb1_3	PF04983.18	1.2e-36	1	1
ENSGAFP00000022609	RNA_pol_Rpb1_1	PF04997.12	1.5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000022833	-	4932	-	ENSGAFP00000022609	1643 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000015266's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000015266's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000015266	polr1a	63	32.705	ENSGAFG00000005112	polr3a	69	32.705

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000015266	polr1a	100	65.046	ENSG00000068654	POLR1A	100	64.986	Homo_sapiens
ENSGAFG00000015266	polr1a	68	81.037	ENSAPOG00000017945	polr1a	99	81.138	Acanthochromis_polyacanthus
ENSGAFG00000015266	polr1a	100	63.841	ENSAMEG00000005807	POLR1A	100	67.416	Ailuropoda_melanoleuca
ENSGAFG00000015266	polr1a	100	79.157	ENSACIG00000022147	polr1a	100	79.217	Amphilophus_citrinellus
ENSGAFG00000015266	polr1a	100	80.479	ENSAOCG00000017336	polr1a	100	83.832	Amphiprion_ocellaris
ENSGAFG00000015266	polr1a	100	80.479	ENSAPEG00000016105	polr1a	100	80.700	Amphiprion_percula
ENSGAFG00000015266	polr1a	100	81.501	ENSATEG00000016773	polr1a	100	81.324	Anabas_testudineus
ENSGAFG00000015266	polr1a	87	66.508	ENSAPLG00000013871	POLR1A	99	66.780	Anas_platyrhynchos
ENSGAFG00000015266	polr1a	99	63.599	ENSACAG00000012141	POLR1A	99	63.149	Anolis_carolinensis
ENSGAFG00000015266	polr1a	100	64.203	ENSANAG00000033927	POLR1A	100	64.580	Aotus_nancymaae
ENSGAFG00000015266	polr1a	100	78.792	ENSACLG00000020541	polr1a	100	78.300	Astatotilapia_calliptera
ENSGAFG00000015266	polr1a	100	63.919	ENSBTAG00000006481	POLR1A	100	64.248	Bos_taurus
ENSGAFG00000015266	polr1a	99	38.857	WBGene00012999	rpoa-1	98	38.739	Caenorhabditis_elegans
ENSGAFG00000015266	polr1a	100	64.224	ENSCJAG00000019547	POLR1A	100	64.737	Callithrix_jacchus
ENSGAFG00000015266	polr1a	100	64.097	ENSCAFG00000007613	POLR1A	100	64.713	Canis_familiaris
ENSGAFG00000015266	polr1a	100	65.929	ENSCAFG00020014752	POLR1A	100	65.929	Canis_lupus_dingo
ENSGAFG00000015266	polr1a	100	63.878	ENSCHIG00000018204	POLR1A	100	64.016	Capra_hircus
ENSGAFG00000015266	polr1a	100	64.030	ENSTSYG00000002761	POLR1A	100	64.423	Carlito_syrichta
ENSGAFG00000015266	polr1a	97	61.779	ENSCAPG00000010132	POLR1A	99	62.154	Cavia_aperea
ENSGAFG00000015266	polr1a	100	64.767	ENSCPOG00000012350	POLR1A	100	65.134	Cavia_porcellus
ENSGAFG00000015266	polr1a	100	64.890	ENSCCAG00000019839	POLR1A	100	64.910	Cebus_capucinus
ENSGAFG00000015266	polr1a	100	65.336	ENSCATG00000029786	POLR1A	100	65.043	Cercocebus_atys
ENSGAFG00000015266	polr1a	100	64.178	ENSCLAG00000005187	POLR1A	100	63.884	Chinchilla_lanigera
ENSGAFG00000015266	polr1a	100	65.006	ENSCSAG00000016251	POLR1A	100	64.638	Chlorocebus_sabaeus
ENSGAFG00000015266	polr1a	99	65.578	ENSCPBG00000001115	POLR1A	99	65.539	Chrysemys_picta_bellii
ENSGAFG00000015266	polr1a	92	55.375	ENSCSAVG00000007184	-	99	47.396	Ciona_savignyi
ENSGAFG00000015266	polr1a	100	62.305	ENSCANG00000031785	POLR1A	100	61.877	Colobus_angolensis_palliatus
ENSGAFG00000015266	polr1a	100	59.397	ENSCGRG00001006651	Polr1a	100	59.117	Cricetulus_griseus_chok1gshd
ENSGAFG00000015266	polr1a	61	64.494	ENSCGRG00000010834	Polr1a	100	64.133	Cricetulus_griseus_crigri
ENSGAFG00000015266	polr1a	100	73.880	ENSCSEG00000020190	polr1a	100	74.085	Cynoglossus_semilaevis
ENSGAFG00000015266	polr1a	100	83.710	ENSCVAG00000020941	polr1a	100	84.245	Cyprinodon_variegatus
ENSGAFG00000015266	polr1a	100	70.492	ENSDARG00000098375	polr1a	100	70.217	Danio_rerio
ENSGAFG00000015266	polr1a	100	61.668	ENSDNOG00000010829	POLR1A	100	61.369	Dasypus_novemcinctus
ENSGAFG00000015266	polr1a	100	63.804	ENSDORG00000008298	Polr1a	100	64.174	Dipodomys_ordii
ENSGAFG00000015266	polr1a	99	42.857	FBgn0019938	RpI1	99	42.755	Drosophila_melanogaster
ENSGAFG00000015266	polr1a	72	90.625	ENSETEG00000000412	-	71	90.625	Echinops_telfairi
ENSGAFG00000015266	polr1a	90	48.966	ENSEBUG00000005667	-	99	48.928	Eptatretus_burgeri
ENSGAFG00000015266	polr1a	100	64.253	ENSEASG00005001625	POLR1A	100	65.006	Equus_asinus_asinus
ENSGAFG00000015266	polr1a	100	64.310	ENSECAG00000036306	-	99	68.776	Equus_caballus
ENSGAFG00000015266	polr1a	100	64.310	ENSECAG00000030510	-	99	68.776	Equus_caballus
ENSGAFG00000015266	polr1a	100	64.310	ENSECAG00000010092	POLR1A	99	68.776	Equus_caballus
ENSGAFG00000015266	polr1a	83	83.465	ENSEEUG00000000676	POLR1A	80	83.465	Erinaceus_europaeus
ENSGAFG00000015266	polr1a	100	70.979	ENSELUG00000012769	polr1a	99	71.179	Esox_lucius
ENSGAFG00000015266	polr1a	100	63.940	ENSFCAG00000008966	POLR1A	100	64.662	Felis_catus
ENSGAFG00000015266	polr1a	99	63.869	ENSFALG00000010082	POLR1A	99	64.689	Ficedula_albicollis
ENSGAFG00000015266	polr1a	100	64.049	ENSFDAG00000013726	POLR1A	100	64.282	Fukomys_damarensis
ENSGAFG00000015266	polr1a	100	79.560	ENSFHEG00000005996	polr1a	100	79.645	Fundulus_heteroclitus
ENSGAFG00000015266	polr1a	100	69.282	ENSGMOG00000002230	polr1a	100	69.343	Gadus_morhua
ENSGAFG00000015266	polr1a	89	61.228	ENSGALG00000038160	-	98	62.646	Gallus_gallus
ENSGAFG00000015266	polr1a	100	75.289	ENSGACG00000018791	polr1a	100	75.319	Gasterosteus_aculeatus
ENSGAFG00000015266	polr1a	90	67.439	ENSGAGG00000004984	-	99	67.015	Gopherus_agassizii
ENSGAFG00000015266	polr1a	100	65.220	ENSGGOG00000001788	POLR1A	100	65.159	Gorilla_gorilla
ENSGAFG00000015266	polr1a	90	79.239	ENSHBUG00000020021	polr1a	99	79.534	Haplochromis_burtoni
ENSGAFG00000015266	polr1a	100	64.323	ENSHGLG00000006334	POLR1A	100	64.572	Heterocephalus_glaber_female
ENSGAFG00000015266	polr1a	100	64.137	ENSHGLG00100006614	POLR1A	100	64.385	Heterocephalus_glaber_male
ENSGAFG00000015266	polr1a	100	75.916	ENSHCOG00000003345	polr1a	100	75.796	Hippocampus_comes
ENSGAFG00000015266	polr1a	100	69.100	ENSIPUG00000013174	polr1a	100	69.375	Ictalurus_punctatus
ENSGAFG00000015266	polr1a	100	64.518	ENSSTOG00000012580	POLR1A	100	64.898	Ictidomys_tridecemlineatus
ENSGAFG00000015266	polr1a	100	63.916	ENSJJAG00000013113	Polr1a	100	64.381	Jaculus_jaculus
ENSGAFG00000015266	polr1a	100	82.360	ENSKMAG00000007399	polr1a	100	82.537	Kryptolebias_marmoratus
ENSGAFG00000015266	polr1a	94	82.976	ENSLBEG00000015401	polr1a	99	82.904	Labrus_bergylta
ENSGAFG00000015266	polr1a	53	69.097	ENSLACG00000003218	polr1a	100	69.097	Latimeria_chalumnae
ENSGAFG00000015266	polr1a	100	69.329	ENSLOCG00000010881	polr1a	100	69.271	Lepisosteus_oculatus
ENSGAFG00000015266	polr1a	100	64.849	ENSLAFG00000014948	POLR1A	100	64.965	Loxodonta_africana
ENSGAFG00000015266	polr1a	100	64.815	ENSMFAG00000046097	POLR1A	100	65.023	Macaca_fascicularis
ENSGAFG00000015266	polr1a	100	64.757	ENSMMUG00000015815	POLR1A	100	64.965	Macaca_mulatta
ENSGAFG00000015266	polr1a	100	64.815	ENSMNEG00000043313	POLR1A	100	65.023	Macaca_nemestrina
ENSGAFG00000015266	polr1a	100	64.988	ENSMLEG00000042428	POLR1A	100	64.406	Mandrillus_leucophaeus
ENSGAFG00000015266	polr1a	100	79.633	ENSMAMG00000016565	polr1a	100	80.107	Mastacembelus_armatus
ENSGAFG00000015266	polr1a	100	81.630	ENSMZEG00005004915	polr1a	100	81.217	Maylandia_zebra
ENSGAFG00000015266	polr1a	99	61.494	ENSMGAG00000013111	POLR1A	99	61.601	Meleagris_gallopavo
ENSGAFG00000015266	polr1a	90	65.974	ENSMAUG00000008497	Polr1a	97	66.103	Mesocricetus_auratus
ENSGAFG00000015266	polr1a	100	64.175	ENSMICG00000000757	POLR1A	100	64.447	Microcebus_murinus
ENSGAFG00000015266	polr1a	100	64.634	ENSMOCG00000000122	Polr1a	100	64.692	Microtus_ochrogaster
ENSGAFG00000015266	polr1a	100	77.327	ENSMMOG00000010216	polr1a	100	77.327	Mola_mola
ENSGAFG00000015266	polr1a	100	60.914	ENSMODG00000009335	POLR1A	100	60.949	Monodelphis_domestica
ENSGAFG00000015266	polr1a	100	79.622	ENSMALG00000013363	polr1a	100	79.740	Monopterus_albus
ENSGAFG00000015266	polr1a	100	63.453	MGP_CAROLIEiJ_G0028494	Polr1a	100	63.747	Mus_caroli
ENSGAFG00000015266	polr1a	100	63.337	ENSMUSG00000049553	Polr1a	100	63.921	Mus_musculus
ENSGAFG00000015266	polr1a	100	64.364	MGP_PahariEiJ_G0022230	Polr1a	100	64.207	Mus_pahari
ENSGAFG00000015266	polr1a	100	62.699	MGP_SPRETEiJ_G0029499	Polr1a	100	62.978	Mus_spretus
ENSGAFG00000015266	polr1a	100	63.809	ENSMPUG00000009135	POLR1A	100	64.501	Mustela_putorius_furo
ENSGAFG00000015266	polr1a	100	64.007	ENSMLUG00000015723	POLR1A	100	64.818	Myotis_lucifugus
ENSGAFG00000015266	polr1a	100	64.368	ENSNGAG00000017907	Polr1a	100	64.385	Nannospalax_galili
ENSGAFG00000015266	polr1a	100	81.028	ENSNBRG00000000519	polr1a	100	81.099	Neolamprologus_brichardi
ENSGAFG00000015266	polr1a	100	62.335	ENSNLEG00000002264	POLR1A	100	63.048	Nomascus_leucogenys
ENSGAFG00000015266	polr1a	75	82.677	ENSMEUG00000011665	-	75	82.677	Notamacropus_eugenii
ENSGAFG00000015266	polr1a	95	68.085	ENSOPRG00000008269	POLR1A	95	68.085	Ochotona_princeps
ENSGAFG00000015266	polr1a	100	64.137	ENSODEG00000003542	POLR1A	100	64.419	Octodon_degus
ENSGAFG00000015266	polr1a	100	80.609	ENSONIG00000015895	polr1a	100	80.492	Oreochromis_niloticus
ENSGAFG00000015266	polr1a	100	65.038	ENSOCUG00000010138	POLR1A	100	65.212	Oryctolagus_cuniculus
ENSGAFG00000015266	polr1a	100	78.820	ENSORLG00000008753	polr1a	99	79.174	Oryzias_latipes
ENSGAFG00000015266	polr1a	100	76.057	ENSORLG00020020726	polr1a	99	76.355	Oryzias_latipes_hni
ENSGAFG00000015266	polr1a	100	76.022	ENSORLG00015016071	polr1a	99	76.382	Oryzias_latipes_hsok
ENSGAFG00000015266	polr1a	100	64.108	ENSOGAG00000004031	POLR1A	100	64.368	Otolemur_garnettii
ENSGAFG00000015266	polr1a	100	63.830	ENSOARG00000020601	POLR1A	100	64.178	Ovis_aries
ENSGAFG00000015266	polr1a	100	65.046	ENSPPAG00000042450	POLR1A	100	64.986	Pan_paniscus
ENSGAFG00000015266	polr1a	100	64.039	ENSPPRG00000006702	POLR1A	100	64.574	Panthera_pardus
ENSGAFG00000015266	polr1a	100	63.589	ENSPTIG00000018783	POLR1A	100	64.122	Panthera_tigris_altaica
ENSGAFG00000015266	polr1a	100	64.641	ENSPTRG00000012147	POLR1A	100	65.043	Pan_troglodytes
ENSGAFG00000015266	polr1a	100	65.162	ENSPANG00000025908	POLR1A	100	64.870	Papio_anubis
ENSGAFG00000015266	polr1a	100	69.295	ENSPKIG00000005468	polr1a	100	69.019	Paramormyrops_kingsleyae
ENSGAFG00000015266	polr1a	64	65.584	ENSPSIG00000009321	-	99	64.657	Pelodiscus_sinensis
ENSGAFG00000015266	polr1a	54	81.075	ENSPMGG00000009718	polr1a	95	81.075	Periophthalmus_magnuspinnatus
ENSGAFG00000015266	polr1a	100	64.410	ENSPEMG00000022224	Polr1a	100	64.501	Peromyscus_maniculatus_bairdii
ENSGAFG00000015266	polr1a	95	62.782	ENSPCIG00000004222	POLR1A	99	63.331	Phascolarctos_cinereus
ENSGAFG00000015266	polr1a	100	90.737	ENSPFOG00000005025	polr1a	100	91.091	Poecilia_formosa
ENSGAFG00000015266	polr1a	100	91.366	ENSPLAG00000021389	polr1a	100	91.425	Poecilia_latipinna
ENSGAFG00000015266	polr1a	100	88.052	ENSPMEG00000006463	polr1a	100	88.052	Poecilia_mexicana
ENSGAFG00000015266	polr1a	100	90.158	ENSPREG00000002389	polr1a	100	90.158	Poecilia_reticulata
ENSGAFG00000015266	polr1a	100	63.977	ENSPPYG00000012217	POLR1A	100	64.522	Pongo_abelii
ENSGAFG00000015266	polr1a	86	63.876	ENSPCAG00000011582	POLR1A	87	63.876	Procavia_capensis
ENSGAFG00000015266	polr1a	100	63.777	ENSPCOG00000026987	POLR1A	100	64.331	Propithecus_coquereli
ENSGAFG00000015266	polr1a	95	64.275	ENSPVAG00000012674	POLR1A	95	64.788	Pteropus_vampyrus
ENSGAFG00000015266	polr1a	100	81.571	ENSPNYG00000000026	polr1a	100	81.158	Pundamilia_nyererei
ENSGAFG00000015266	polr1a	100	69.573	ENSPNAG00000019223	polr1a	100	69.573	Pygocentrus_nattereri
ENSGAFG00000015266	polr1a	100	63.953	ENSRNOG00000009545	Polr1a	100	63.974	Rattus_norvegicus
ENSGAFG00000015266	polr1a	100	64.195	ENSRBIG00000028335	POLR1A	100	64.580	Rhinopithecus_bieti
ENSGAFG00000015266	polr1a	100	64.195	ENSRROG00000031473	POLR1A	100	64.580	Rhinopithecus_roxellana
ENSGAFG00000015266	polr1a	94	47.200	YOR341W	RPA190	88	46.094	Saccharomyces_cerevisiae
ENSGAFG00000015266	polr1a	100	63.788	ENSSBOG00000030262	POLR1A	100	64.641	Saimiri_boliviensis_boliviensis
ENSGAFG00000015266	polr1a	100	59.002	ENSSHAG00000014739	POLR1A	100	59.296	Sarcophilus_harrisii
ENSGAFG00000015266	polr1a	100	68.754	ENSSFOG00015019716	polr1a	100	69.254	Scleropages_formosus
ENSGAFG00000015266	polr1a	100	79.976	ENSSMAG00000014342	polr1a	100	79.940	Scophthalmus_maximus
ENSGAFG00000015266	polr1a	100	81.033	ENSSDUG00000014631	polr1a	100	81.331	Seriola_dumerili
ENSGAFG00000015266	polr1a	100	79.144	ENSSLDG00000024095	polr1a	100	79.011	Seriola_lalandi_dorsalis
ENSGAFG00000015266	polr1a	67	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSGAFG00000015266	polr1a	94	73.438	ENSSPUG00000004215	POLR1A	98	73.438	Sphenodon_punctatus
ENSGAFG00000015266	polr1a	63	85.352	ENSSPAG00000016341	polr1a	93	85.352	Stegastes_partitus
ENSGAFG00000015266	polr1a	83	65.433	ENSSSCG00000008226	POLR1A	99	65.455	Sus_scrofa
ENSGAFG00000015266	polr1a	99	63.892	ENSTGUG00000010704	POLR1A	100	64.113	Taeniopygia_guttata
ENSGAFG00000015266	polr1a	100	74.705	ENSTRUG00000002210	polr1a	99	74.838	Takifugu_rubripes
ENSGAFG00000015266	polr1a	100	68.884	ENSTNIG00000010116	polr1a	100	68.372	Tetraodon_nigroviridis
ENSGAFG00000015266	polr1a	69	80.531	ENSTBEG00000008646	POLR1A	70	80.531	Tupaia_belangeri
ENSGAFG00000015266	polr1a	100	62.073	ENSTTRG00000008597	POLR1A	100	62.173	Tursiops_truncatus
ENSGAFG00000015266	polr1a	70	65.770	ENSUAMG00000012158	-	94	66.186	Ursus_americanus
ENSGAFG00000015266	polr1a	100	63.970	ENSUMAG00000006700	POLR1A	100	64.203	Ursus_maritimus
ENSGAFG00000015266	polr1a	100	64.092	ENSVVUG00000001245	POLR1A	100	64.713	Vulpes_vulpes
ENSGAFG00000015266	polr1a	100	61.663	ENSXETG00000001952	polr1a	99	62.630	Xenopus_tropicalis
ENSGAFG00000015266	polr1a	100	91.509	ENSXMAG00000004032	polr1a	100	91.686	Xiphophorus_maculatus