EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000015375 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 10337 bases
Position: chrNHOQ01002824.1:84349-94685
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000022740	RRM_1	PF00076.22	3e-61	1	4
ENSGAFP00000022740	RRM_1	PF00076.22	3e-61	2	4
ENSGAFP00000022740	RRM_1	PF00076.22	3e-61	3	4
ENSGAFP00000022740	RRM_1	PF00076.22	3e-61	4	4
ENSGAFP00000022733	RRM_1	PF00076.22	3.1e-61	1	4
ENSGAFP00000022733	RRM_1	PF00076.22	3.1e-61	2	4
ENSGAFP00000022733	RRM_1	PF00076.22	3.1e-61	3	4
ENSGAFP00000022733	RRM_1	PF00076.22	3.1e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000022961	-	6247	-	ENSGAFP00000022733	741 (aa)	-	-
ENSGAFT00000022968	-	6070	-	ENSGAFP00000022740	738 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000015375's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000015375's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000015375	ncl	67	38.380	ENSGAFG00000018408	-	79	41.902

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000015375	ncl	57	80.952	ENSAPOG00000023888	ncl	81	82.133	Acanthochromis_polyacanthus
ENSGAFG00000015375	ncl	68	38.361	ENSAPOG00000014534	-	67	42.132	Acanthochromis_polyacanthus
ENSGAFG00000015375	ncl	51	74.734	ENSACIG00000013234	ncl	62	74.933	Amphilophus_citrinellus
ENSGAFG00000015375	ncl	58	74.126	ENSAOCG00000003133	ncl	65	78.017	Amphiprion_ocellaris
ENSGAFG00000015375	ncl	66	36.822	ENSAOCG00000014792	-	61	41.071	Amphiprion_ocellaris
ENSGAFG00000015375	ncl	57	81.948	ENSAPEG00000002769	ncl	89	68.296	Amphiprion_percula
ENSGAFG00000015375	ncl	66	37.380	ENSAPEG00000013612	-	60	41.327	Amphiprion_percula
ENSGAFG00000015375	ncl	63	42.105	ENSATEG00000019862	-	81	44.643	Anabas_testudineus
ENSGAFG00000015375	ncl	62	80.519	ENSATEG00000013343	ncl	73	75.586	Anabas_testudineus
ENSGAFG00000015375	ncl	58	47.059	ENSAPLG00000012897	-	63	59.416	Anas_platyrhynchos
ENSGAFG00000015375	ncl	50	62.992	ENSACAG00000001006	-	52	62.895	Anolis_carolinensis
ENSGAFG00000015375	ncl	51	69.149	ENSAMXG00000001647	ncl	84	72.910	Astyanax_mexicanus
ENSGAFG00000015375	ncl	50	41.129	ENSCHIG00000012665	-	50	42.330	Capra_hircus
ENSGAFG00000015375	ncl	50	62.105	ENSCPBG00000016444	-	56	62.005	Chrysemys_picta_bellii
ENSGAFG00000015375	ncl	65	76.989	ENSCSEG00000015089	ncl	74	78.892	Cynoglossus_semilaevis
ENSGAFG00000015375	ncl	63	69.593	ENSDARG00000002710	ncl	82	76.527	Danio_rerio
ENSGAFG00000015375	ncl	67	45.000	ENSDNOG00000040257	-	63	44.619	Dasypus_novemcinctus
ENSGAFG00000015375	ncl	68	45.872	ENSEBUG00000016173	ncl	56	48.276	Eptatretus_burgeri
ENSGAFG00000015375	ncl	65	43.867	ENSELUG00000022826	-	80	47.989	Esox_lucius
ENSGAFG00000015375	ncl	57	73.882	ENSELUG00000006033	ncl	64	66.292	Esox_lucius
ENSGAFG00000015375	ncl	63	81.067	ENSFHEG00000018000	ncl	72	80.349	Fundulus_heteroclitus
ENSGAFG00000015375	ncl	64	67.632	ENSGMOG00000001341	ncl	59	67.292	Gadus_morhua
ENSGAFG00000015375	ncl	50	60.582	ENSGALG00000032930	NCL	55	60.582	Gallus_gallus
ENSGAFG00000015375	ncl	70	65.559	ENSGACG00000008970	ncl	56	76.425	Gasterosteus_aculeatus
ENSGAFG00000015375	ncl	50	62.632	ENSGAGG00000013330	-	56	62.533	Gopherus_agassizii
ENSGAFG00000015375	ncl	50	77.297	ENSHBUG00000006869	ncl	89	66.218	Haplochromis_burtoni
ENSGAFG00000015375	ncl	69	80.155	ENSHCOG00000010234	ncl	75	68.282	Hippocampus_comes
ENSGAFG00000015375	ncl	71	81.862	ENSKMAG00000008111	ncl	70	71.593	Kryptolebias_marmoratus
ENSGAFG00000015375	ncl	58	81.412	ENSLBEG00000019073	ncl	57	81.890	Labrus_bergylta
ENSGAFG00000015375	ncl	62	40.678	ENSLBEG00000007915	-	66	43.188	Labrus_bergylta
ENSGAFG00000015375	ncl	78	63.208	ENSLACG00000009328	ncl	59	30.100	Latimeria_chalumnae
ENSGAFG00000015375	ncl	52	54.242	ENSLACG00000022167	-	76	55.556	Latimeria_chalumnae
ENSGAFG00000015375	ncl	58	39.597	ENSMAMG00000003479	-	69	40.625	Mastacembelus_armatus
ENSGAFG00000015375	ncl	50	77.297	ENSMZEG00005017438	ncl	67	67.391	Maylandia_zebra
ENSGAFG00000015375	ncl	51	60.326	ENSMGAG00000008147	-	88	60.326	Meleagris_gallopavo
ENSGAFG00000015375	ncl	50	55.875	ENSMODG00000002470	-	54	55.844	Monodelphis_domestica
ENSGAFG00000015375	ncl	90	67.130	ENSMALG00000014827	ncl	65	80.808	Monopterus_albus
ENSGAFG00000015375	ncl	57	52.900	ENSMEUG00000012335	-	54	58.158	Notamacropus_eugenii
ENSGAFG00000015375	ncl	57	76.247	ENSONIG00000012508	ncl	89	67.213	Oreochromis_niloticus
ENSGAFG00000015375	ncl	52	58.396	ENSOANG00000008732	-	60	59.896	Ornithorhynchus_anatinus
ENSGAFG00000015375	ncl	53	37.403	ENSORLG00000004645	-	83	37.726	Oryzias_latipes
ENSGAFG00000015375	ncl	58	82.353	ENSORLG00000007055	ncl	64	79.399	Oryzias_latipes
ENSGAFG00000015375	ncl	52	37.000	ENSORLG00020003497	-	74	37.726	Oryzias_latipes_hni
ENSGAFG00000015375	ncl	58	82.353	ENSORLG00020017943	ncl	65	79.399	Oryzias_latipes_hni
ENSGAFG00000015375	ncl	58	79.059	ENSORLG00015013815	ncl	88	84.295	Oryzias_latipes_hsok
ENSGAFG00000015375	ncl	52	37.250	ENSORLG00015006613	-	77	37.984	Oryzias_latipes_hsok
ENSGAFG00000015375	ncl	52	36.973	ENSOMEG00000015864	-	81	36.911	Oryzias_melastigma
ENSGAFG00000015375	ncl	67	72.038	ENSPKIG00000002604	ncl	73	74.599	Paramormyrops_kingsleyae
ENSGAFG00000015375	ncl	57	74.347	ENSPMGG00000004709	ncl	83	75.884	Periophthalmus_magnuspinnatus
ENSGAFG00000015375	ncl	50	57.180	ENSPCIG00000003293	-	53	57.143	Phascolarctos_cinereus
ENSGAFG00000015375	ncl	62	93.464	ENSPFOG00000024205	ncl	71	97.101	Poecilia_formosa
ENSGAFG00000015375	ncl	62	94.541	ENSPLAG00000024026	ncl	62	94.530	Poecilia_latipinna
ENSGAFG00000015375	ncl	62	93.668	ENSPMEG00000006000	ncl	62	93.654	Poecilia_mexicana
ENSGAFG00000015375	ncl	50	77.297	ENSPNYG00000020494	ncl	67	67.391	Pundamilia_nyererei
ENSGAFG00000015375	ncl	57	68.246	ENSPNAG00000006192	ncl	52	69.312	Pygocentrus_nattereri
ENSGAFG00000015375	ncl	61	70.222	ENSSFOG00015008583	ncl	76	77.005	Scleropages_formosus
ENSGAFG00000015375	ncl	58	78.788	ENSSMAG00000021241	ncl	67	75.855	Scophthalmus_maximus
ENSGAFG00000015375	ncl	56	41.080	ENSSMAG00000007582	-	61	43.421	Scophthalmus_maximus
ENSGAFG00000015375	ncl	67	70.803	ENSSDUG00000006128	ncl	87	83.465	Seriola_dumerili
ENSGAFG00000015375	ncl	60	39.309	ENSSDUG00000010922	-	70	41.406	Seriola_dumerili
ENSGAFG00000015375	ncl	64	82.710	ENSSLDG00000002012	ncl	89	68.991	Seriola_lalandi_dorsalis
ENSGAFG00000015375	ncl	51	42.025	ENSSLDG00000015784	-	65	41.885	Seriola_lalandi_dorsalis
ENSGAFG00000015375	ncl	62	54.400	ENSSPUG00000008244	-	59	59.640	Sphenodon_punctatus
ENSGAFG00000015375	ncl	52	43.291	ENSSPAG00000001859	-	61	42.820	Stegastes_partitus
ENSGAFG00000015375	ncl	50	59.948	ENSTGUG00000009782	-	60	60.209	Taeniopygia_guttata
ENSGAFG00000015375	ncl	50	62.865	ENSXETG00000009517	ncl	54	63.660	Xenopus_tropicalis
ENSGAFG00000015375	ncl	52	71.279	ENSXCOG00000003524	ncl	99	76.798	Xiphophorus_couchianus
ENSGAFG00000015375	ncl	53	40.594	ENSXCOG00000007369	-	89	41.579	Xiphophorus_couchianus
ENSGAFG00000015375	ncl	62	93.696	ENSXMAG00000005914	ncl	70	88.544	Xiphophorus_maculatus