EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000015617 (Gene tree)
Gene ID: -
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA-binding family member 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 28068 bases
Position: chrNHOQ01002733.1:6755955-6784022
Accession: ZDB-GENE-030131-2074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000023150	PUF	PF00806.19	2.4e-71	1	8
ENSGAFP00000023150	PUF	PF00806.19	2.4e-71	2	8
ENSGAFP00000023150	PUF	PF00806.19	2.4e-71	3	8
ENSGAFP00000023150	PUF	PF00806.19	2.4e-71	4	8
ENSGAFP00000023150	PUF	PF00806.19	2.4e-71	5	8
ENSGAFP00000023150	PUF	PF00806.19	2.4e-71	6	8
ENSGAFP00000023150	PUF	PF00806.19	2.4e-71	7	8
ENSGAFP00000023150	PUF	PF00806.19	2.4e-71	8	8
ENSGAFP00000023140	PUF	PF00806.19	7.7e-70	1	8
ENSGAFP00000023140	PUF	PF00806.19	7.7e-70	2	8
ENSGAFP00000023140	PUF	PF00806.19	7.7e-70	3	8
ENSGAFP00000023140	PUF	PF00806.19	7.7e-70	4	8
ENSGAFP00000023140	PUF	PF00806.19	7.7e-70	5	8
ENSGAFP00000023140	PUF	PF00806.19	7.7e-70	6	8
ENSGAFP00000023140	PUF	PF00806.19	7.7e-70	7	8
ENSGAFP00000023140	PUF	PF00806.19	7.7e-70	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000023377	-	5120	-	ENSGAFP00000023140	1163 (aa)	-	-
ENSGAFT00000023387	-	2940	-	ENSGAFP00000023150	979 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000015617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000015617's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000015617	pum1	99	84.988	ENSGAFG00000013691	pum2	83	84.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000015617	pum1	100	82.030	ENSG00000134644	PUM1	95	87.816	Homo_sapiens
ENSGAFG00000015617	pum1	100	98.194	ENSAPOG00000021632	pum1	100	98.194	Acanthochromis_polyacanthus
ENSGAFG00000015617	pum1	100	90.361	ENSAMEG00000017656	PUM1	87	87.816	Ailuropoda_melanoleuca
ENSGAFG00000015617	pum1	100	97.420	ENSACIG00000021013	pum1	100	97.420	Amphilophus_citrinellus
ENSGAFG00000015617	pum1	100	98.194	ENSAOCG00000003944	pum1	100	98.194	Amphiprion_ocellaris
ENSGAFG00000015617	pum1	100	98.194	ENSAPEG00000014550	pum1	100	98.194	Amphiprion_percula
ENSGAFG00000015617	pum1	100	98.072	ENSATEG00000016004	pum1	100	97.592	Anabas_testudineus
ENSGAFG00000015617	pum1	100	91.084	ENSAPLG00000009351	PUM1	90	88.046	Anas_platyrhynchos
ENSGAFG00000015617	pum1	100	91.084	ENSACAG00000000682	PUM1	88	88.046	Anolis_carolinensis
ENSGAFG00000015617	pum1	100	90.557	ENSANAG00000027865	PUM1	100	80.817	Aotus_nancymaae
ENSGAFG00000015617	pum1	92	97.746	ENSACLG00000019354	pum1	100	97.746	Astatotilapia_calliptera
ENSGAFG00000015617	pum1	100	81.864	ENSAMXG00000020607	pum1	96	81.780	Astyanax_mexicanus
ENSGAFG00000015617	pum1	100	90.799	ENSBTAG00000018979	PUM1	100	81.088	Bos_taurus
ENSGAFG00000015617	pum1	100	90.361	ENSCJAG00000006035	PUM1	100	80.941	Callithrix_jacchus
ENSGAFG00000015617	pum1	100	90.361	ENSCAFG00020024616	PUM1	100	87.816	Canis_lupus_dingo
ENSGAFG00000015617	pum1	100	90.799	ENSCHIG00000012952	PUM1	90	88.222	Capra_hircus
ENSGAFG00000015617	pum1	100	90.361	ENSTSYG00000008868	PUM1	100	81.928	Carlito_syrichta
ENSGAFG00000015617	pum1	100	90.120	ENSCPOG00000031613	PUM1	100	80.693	Cavia_porcellus
ENSGAFG00000015617	pum1	94	90.843	ENSCATG00000017991	PUM1	93	91.325	Cercocebus_atys
ENSGAFG00000015617	pum1	100	90.120	ENSCLAG00000007662	PUM1	100	80.693	Chinchilla_lanigera
ENSGAFG00000015617	pum1	100	81.684	ENSCSAG00000001028	PUM1	90	87.816	Chlorocebus_sabaeus
ENSGAFG00000015617	pum1	99	68.041	ENSCHOG00000010245	PUM1	93	65.459	Choloepus_hoffmanni
ENSGAFG00000015617	pum1	100	91.325	ENSCPBG00000009288	PUM1	99	88.276	Chrysemys_picta_bellii
ENSGAFG00000015617	pum1	100	90.361	ENSCANG00000042606	PUM1	100	80.941	Colobus_angolensis_palliatus
ENSGAFG00000015617	pum1	100	90.073	ENSCGRG00001024949	Pum1	100	80.569	Cricetulus_griseus_chok1gshd
ENSGAFG00000015617	pum1	100	90.073	ENSCGRG00000014197	Pum1	100	80.569	Cricetulus_griseus_crigri
ENSGAFG00000015617	pum1	92	95.783	ENSCSEG00000015981	pum1	100	95.783	Cynoglossus_semilaevis
ENSGAFG00000015617	pum1	100	99.036	ENSCVAG00000007043	pum1	100	98.280	Cyprinodon_variegatus
ENSGAFG00000015617	pum1	100	93.735	ENSDARG00000099256	pum1	100	80.847	Danio_rerio
ENSGAFG00000015617	pum1	100	89.880	ENSDNOG00000010939	PUM1	90	87.356	Dasypus_novemcinctus
ENSGAFG00000015617	pum1	100	78.579	ENSDORG00000001875	Pum1	100	76.229	Dipodomys_ordii
ENSGAFG00000015617	pum1	98	77.151	ENSETEG00000004355	PUM1	87	75.000	Echinops_telfairi
ENSGAFG00000015617	pum1	100	81.263	ENSEASG00005010813	PUM1	90	87.356	Equus_asinus_asinus
ENSGAFG00000015617	pum1	99	89.880	ENSECAG00000021369	PUM1	89	87.356	Equus_caballus
ENSGAFG00000015617	pum1	76	90.120	ENSEEUG00000003871	PUM1	74	90.444	Erinaceus_europaeus
ENSGAFG00000015617	pum1	100	95.904	ENSELUG00000002409	pum1	100	91.511	Esox_lucius
ENSGAFG00000015617	pum1	100	90.361	ENSFCAG00000010374	PUM1	100	81.064	Felis_catus
ENSGAFG00000015617	pum1	100	91.084	ENSFALG00000001214	PUM1	87	88.046	Ficedula_albicollis
ENSGAFG00000015617	pum1	100	90.049	ENSFDAG00000011319	PUM1	100	80.693	Fukomys_damarensis
ENSGAFG00000015617	pum1	90	97.831	ENSGMOG00000010491	pum1	100	90.273	Gadus_morhua
ENSGAFG00000015617	pum1	100	91.084	ENSGALG00000042598	PUM1	99	89.940	Gallus_gallus
ENSGAFG00000015617	pum1	100	97.590	ENSGACG00000005717	pum1	100	96.207	Gasterosteus_aculeatus
ENSGAFG00000015617	pum1	100	91.325	ENSGAGG00000001290	PUM1	99	90.141	Gopherus_agassizii
ENSGAFG00000015617	pum1	100	90.361	ENSGGOG00000011983	PUM1	100	80.941	Gorilla_gorilla
ENSGAFG00000015617	pum1	100	98.022	ENSHBUG00000018718	pum1	100	98.022	Haplochromis_burtoni
ENSGAFG00000015617	pum1	100	89.806	ENSHGLG00000013819	Pum1	100	80.569	Heterocephalus_glaber_female
ENSGAFG00000015617	pum1	100	89.806	ENSHGLG00100008621	Pum1	100	80.569	Heterocephalus_glaber_male
ENSGAFG00000015617	pum1	92	90.338	ENSHCOG00000005149	pum1	100	89.024	Hippocampus_comes
ENSGAFG00000015617	pum1	100	94.940	ENSIPUG00000020421	pum1	100	80.876	Ictalurus_punctatus
ENSGAFG00000015617	pum1	100	81.474	ENSSTOG00000010757	PUM1	100	80.941	Ictidomys_tridecemlineatus
ENSGAFG00000015617	pum1	100	89.880	ENSJJAG00000000530	Pum1	100	80.817	Jaculus_jaculus
ENSGAFG00000015617	pum1	100	99.036	ENSKMAG00000003481	pum1	100	98.022	Kryptolebias_marmoratus
ENSGAFG00000015617	pum1	100	98.072	ENSLBEG00000002527	pum1	100	96.905	Labrus_bergylta
ENSGAFG00000015617	pum1	100	83.014	ENSLACG00000017188	PUM1	99	72.185	Latimeria_chalumnae
ENSGAFG00000015617	pum1	100	93.735	ENSLOCG00000005210	pum1	99	80.333	Lepisosteus_oculatus
ENSGAFG00000015617	pum1	100	91.807	ENSLAFG00000003178	PUM1	90	88.736	Loxodonta_africana
ENSGAFG00000015617	pum1	100	90.361	ENSMFAG00000010291	PUM1	100	80.941	Macaca_fascicularis
ENSGAFG00000015617	pum1	100	90.361	ENSMMUG00000013520	PUM1	100	80.941	Macaca_mulatta
ENSGAFG00000015617	pum1	100	81.684	ENSMNEG00000034639	PUM1	100	80.941	Macaca_nemestrina
ENSGAFG00000015617	pum1	100	90.361	ENSMLEG00000038743	PUM1	100	80.941	Mandrillus_leucophaeus
ENSGAFG00000015617	pum1	100	97.831	ENSMAMG00000011606	pum1	100	97.334	Mastacembelus_armatus
ENSGAFG00000015617	pum1	100	98.022	ENSMZEG00005005834	pum1	100	98.022	Maylandia_zebra
ENSGAFG00000015617	pum1	100	91.084	ENSMGAG00000000724	PUM1	90	88.046	Meleagris_gallopavo
ENSGAFG00000015617	pum1	100	90.120	ENSMAUG00000022090	Pum1	100	80.917	Mesocricetus_auratus
ENSGAFG00000015617	pum1	100	90.361	ENSMICG00000007713	-	100	80.817	Microcebus_murinus
ENSGAFG00000015617	pum1	100	89.831	ENSMICG00000012213	-	100	87.952	Microcebus_murinus
ENSGAFG00000015617	pum1	100	89.880	ENSMOCG00000015463	Pum1	100	80.693	Microtus_ochrogaster
ENSGAFG00000015617	pum1	100	91.242	ENSMMOG00000019817	pum1	100	91.242	Mola_mola
ENSGAFG00000015617	pum1	100	90.843	ENSMODG00000017067	PUM1	89	87.586	Monodelphis_domestica
ENSGAFG00000015617	pum1	100	96.939	ENSMALG00000016399	pum1	100	96.939	Monopterus_albus
ENSGAFG00000015617	pum1	100	90.799	MGP_CAROLIEiJ_G0026549	Pum1	100	80.569	Mus_caroli
ENSGAFG00000015617	pum1	100	90.557	ENSMUSG00000028580	Pum1	100	80.446	Mus_musculus
ENSGAFG00000015617	pum1	100	90.557	MGP_PahariEiJ_G0028881	Pum1	100	80.446	Mus_pahari
ENSGAFG00000015617	pum1	100	90.557	MGP_SPRETEiJ_G0027529	Pum1	100	80.446	Mus_spretus
ENSGAFG00000015617	pum1	100	90.843	ENSMPUG00000015454	PUM1	90	87.816	Mustela_putorius_furo
ENSGAFG00000015617	pum1	100	90.799	ENSMLUG00000006490	PUM1	90	88.222	Myotis_lucifugus
ENSGAFG00000015617	pum1	100	90.120	ENSNGAG00000002378	Pum1	100	80.941	Nannospalax_galili
ENSGAFG00000015617	pum1	79	98.125	ENSNBRG00000010689	pum1	100	98.125	Neolamprologus_brichardi
ENSGAFG00000015617	pum1	100	87.229	ENSNLEG00000001151	PUM1	100	79.455	Nomascus_leucogenys
ENSGAFG00000015617	pum1	73	78.103	ENSMEUG00000000976	-	67	79.811	Notamacropus_eugenii
ENSGAFG00000015617	pum1	81	91.589	ENSOPRG00000001776	PUM1	75	91.589	Ochotona_princeps
ENSGAFG00000015617	pum1	100	90.120	ENSODEG00000003465	PUM1	100	80.693	Octodon_degus
ENSGAFG00000015617	pum1	100	98.194	ENSONIG00000002290	pum1	100	98.194	Oreochromis_niloticus
ENSGAFG00000015617	pum1	92	60.297	ENSOANG00000004902	-	100	61.235	Ornithorhynchus_anatinus
ENSGAFG00000015617	pum1	99	81.741	ENSOCUG00000008641	PUM1	89	87.935	Oryctolagus_cuniculus
ENSGAFG00000015617	pum1	100	96.829	ENSORLG00000011482	pum1	100	96.829	Oryzias_latipes
ENSGAFG00000015617	pum1	100	97.349	ENSORLG00020019461	pum1	100	96.829	Oryzias_latipes_hni
ENSGAFG00000015617	pum1	100	96.829	ENSORLG00015011375	pum1	100	96.829	Oryzias_latipes_hsok
ENSGAFG00000015617	pum1	100	93.299	ENSOMEG00000009312	pum1	100	93.299	Oryzias_melastigma
ENSGAFG00000015617	pum1	100	82.734	ENSOGAG00000011063	PUM1	100	71.120	Otolemur_garnettii
ENSGAFG00000015617	pum1	100	81.684	ENSOARG00000001899	PUM1	90	87.816	Ovis_aries
ENSGAFG00000015617	pum1	100	90.361	ENSPPAG00000044003	PUM1	100	80.941	Pan_paniscus
ENSGAFG00000015617	pum1	100	90.361	ENSPPRG00000001370	PUM1	100	81.064	Panthera_pardus
ENSGAFG00000015617	pum1	100	90.361	ENSPTIG00000010798	PUM1	100	81.312	Panthera_tigris_altaica
ENSGAFG00000015617	pum1	100	90.361	ENSPTRG00000000453	PUM1	100	80.941	Pan_troglodytes
ENSGAFG00000015617	pum1	100	81.684	ENSPANG00000016338	PUM1	100	80.941	Papio_anubis
ENSGAFG00000015617	pum1	100	92.771	ENSPKIG00000010578	pum1	100	76.853	Paramormyrops_kingsleyae
ENSGAFG00000015617	pum1	100	91.325	ENSPSIG00000014118	PUM1	90	88.276	Pelodiscus_sinensis
ENSGAFG00000015617	pum1	79	96.610	ENSPMGG00000005836	pum1	100	96.610	Periophthalmus_magnuspinnatus
ENSGAFG00000015617	pum1	100	90.120	ENSPEMG00000010009	Pum1	100	80.917	Peromyscus_maniculatus_bairdii
ENSGAFG00000015617	pum1	100	90.843	ENSPCIG00000014151	PUM1	100	80.841	Phascolarctos_cinereus
ENSGAFG00000015617	pum1	95	98.473	ENSPFOG00000007289	pum1	99	98.473	Poecilia_formosa
ENSGAFG00000015617	pum1	100	96.070	ENSPLAG00000007256	pum1	100	98.836	Poecilia_latipinna
ENSGAFG00000015617	pum1	92	98.506	ENSPMEG00000019543	pum1	99	98.506	Poecilia_mexicana
ENSGAFG00000015617	pum1	100	99.398	ENSPREG00000005195	pum1	100	99.398	Poecilia_reticulata
ENSGAFG00000015617	pum1	100	90.361	ENSPPYG00000001621	PUM1	90	87.816	Pongo_abelii
ENSGAFG00000015617	pum1	81	91.975	ENSPCAG00000001979	PUM1	73	92.593	Procavia_capensis
ENSGAFG00000015617	pum1	100	90.361	ENSPCOG00000004398	PUM1	100	80.817	Propithecus_coquereli
ENSGAFG00000015617	pum1	100	84.578	ENSPVAG00000005207	PUM1	87	82.299	Pteropus_vampyrus
ENSGAFG00000015617	pum1	100	98.108	ENSPNYG00000009518	pum1	100	98.108	Pundamilia_nyererei
ENSGAFG00000015617	pum1	100	82.203	ENSPNAG00000026728	pum1	100	82.458	Pygocentrus_nattereri
ENSGAFG00000015617	pum1	100	82.030	ENSRNOG00000011709	Pum1	90	87.991	Rattus_norvegicus
ENSGAFG00000015617	pum1	100	90.361	ENSRBIG00000042521	PUM1	100	80.941	Rhinopithecus_bieti
ENSGAFG00000015617	pum1	100	90.361	ENSRROG00000020156	PUM1	100	80.941	Rhinopithecus_roxellana
ENSGAFG00000015617	pum1	100	90.361	ENSSBOG00000032037	PUM1	100	80.941	Saimiri_boliviensis_boliviensis
ENSGAFG00000015617	pum1	100	90.843	ENSSHAG00000010918	PUM1	89	87.586	Sarcophilus_harrisii
ENSGAFG00000015617	pum1	100	96.819	ENSSMAG00000010918	pum1	100	96.819	Scophthalmus_maximus
ENSGAFG00000015617	pum1	100	98.072	ENSSDUG00000009021	pum1	100	97.936	Seriola_dumerili
ENSGAFG00000015617	pum1	94	98.095	ENSSLDG00000009667	pum1	100	98.095	Seriola_lalandi_dorsalis
ENSGAFG00000015617	pum1	92	81.731	ENSSARG00000003055	PUM1	88	79.045	Sorex_araneus
ENSGAFG00000015617	pum1	100	91.084	ENSSPUG00000006267	PUM1	90	88.046	Sphenodon_punctatus
ENSGAFG00000015617	pum1	100	98.280	ENSSPAG00000016636	pum1	100	98.280	Stegastes_partitus
ENSGAFG00000015617	pum1	100	90.361	ENSSSCG00000003591	PUM1	95	88.934	Sus_scrofa
ENSGAFG00000015617	pum1	100	98.072	ENSTRUG00000013121	pum1	100	98.250	Takifugu_rubripes
ENSGAFG00000015617	pum1	100	97.837	ENSTNIG00000016983	pum1	99	96.068	Tetraodon_nigroviridis
ENSGAFG00000015617	pum1	87	89.024	ENSTBEG00000013810	PUM1	89	89.024	Tupaia_belangeri
ENSGAFG00000015617	pum1	100	81.263	ENSTTRG00000007436	PUM1	87	87.356	Tursiops_truncatus
ENSGAFG00000015617	pum1	98	89.644	ENSUAMG00000018262	-	89	86.322	Ursus_americanus
ENSGAFG00000015617	pum1	100	78.200	ENSUMAG00000009211	PUM1	89	75.852	Ursus_maritimus
ENSGAFG00000015617	pum1	92	83.210	ENSVPAG00000005902	PUM1	92	81.436	Vicugna_pacos
ENSGAFG00000015617	pum1	100	90.799	ENSVVUG00000014631	PUM1	90	87.816	Vulpes_vulpes
ENSGAFG00000015617	pum1	100	72.419	ENSXETG00000012904	pum1	99	70.802	Xenopus_tropicalis
ENSGAFG00000015617	pum1	100	99.054	ENSXMAG00000002945	pum1	100	99.153	Xiphophorus_maculatus