EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000016139 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 4973 bases
Position: chrNHOQ01002341.1:184793-189765
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000023927	zf-C2H2	PF00096.26	3.4e-19	1	3
ENSGAFP00000023927	zf-C2H2	PF00096.26	3.4e-19	2	3
ENSGAFP00000023927	zf-C2H2	PF00096.26	3.4e-19	3	3
ENSGAFP00000023927	zf-met	PF12874.7	2.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000024177	-	2697	-	ENSGAFP00000023927	628 (aa)	-	UPI000DD2AA0A

Gene Model

Click here to download ENSGAFG00000016139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000016139's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000016139	-	51	42.727	ENSGAFG00000012767	-	86	41.718
ENSGAFG00000016139	-	74	38.462	ENSGAFG00000018340	-	70	38.197
ENSGAFG00000016139	-	98	40.000	ENSGAFG00000016322	-	90	45.665
ENSGAFG00000016139	-	54	38.776	ENSGAFG00000003150	-	82	35.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000016139	-	55	35.802	ENSIPUG00000009577	-	68	35.802	Ictalurus_punctatus
ENSGAFG00000016139	-	54	63.743	ENSMALG00000014761	-	99	63.743	Monopterus_albus
ENSGAFG00000016139	-	99	62.201	ENSORLG00000014311	-	99	62.201	Oryzias_latipes
ENSGAFG00000016139	-	99	62.520	ENSORLG00020016116	-	99	62.520	Oryzias_latipes_hni
ENSGAFG00000016139	-	99	61.404	ENSORLG00015014797	-	99	61.404	Oryzias_latipes_hsok
ENSGAFG00000016139	-	100	93.407	ENSPFOG00000004204	-	100	93.407	Poecilia_formosa
ENSGAFG00000016139	-	100	95.701	ENSPLAG00000022088	-	94	95.701	Poecilia_latipinna
ENSGAFG00000016139	-	100	95.701	ENSPMEG00000001411	-	94	95.701	Poecilia_mexicana
ENSGAFG00000016139	-	100	97.293	ENSPREG00000004161	-	100	97.293	Poecilia_reticulata
ENSGAFG00000016139	-	96	66.391	ENSPNYG00000020534	-	99	66.113	Pundamilia_nyererei
ENSGAFG00000016139	-	100	98.089	ENSXMAG00000011035	-	100	98.089	Xiphophorus_maculatus