EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000016191 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 14447 bases
Position: chrNHOQ01002476.1:826514-840960
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000024351	zf-C2H2	PF00096.26	9.4e-18	1	3
ENSGAFP00000024351	zf-C2H2	PF00096.26	9.4e-18	2	3
ENSGAFP00000024351	zf-C2H2	PF00096.26	9.4e-18	3	3
ENSGAFP00000024340	zf-C2H2	PF00096.26	2.2e-17	1	3
ENSGAFP00000024340	zf-C2H2	PF00096.26	2.2e-17	2	3
ENSGAFP00000024340	zf-C2H2	PF00096.26	2.2e-17	3	3
ENSGAFP00000024351	zf-met	PF12874.7	4.6e-06	1	1
ENSGAFP00000024340	zf-met	PF12874.7	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000024598	-	1342	-	ENSGAFP00000024343	447 (aa)	-	-
ENSGAFT00000024605	-	1884	-	ENSGAFP00000024351	627 (aa)	-	-
ENSGAFT00000024594	-	2220	-	ENSGAFP00000024340	739 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000016191's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000016191's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000016191	prdm1b	87	39.771	ENSGAFG00000013012	-	89	39.771

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000016191	prdm1b	77	65.152	ENSAPOG00000014135	-	94	38.481	Acanthochromis_polyacanthus
ENSGAFG00000016191	prdm1b	73	68.547	ENSAPOG00000022084	prdm1b	97	70.282	Acanthochromis_polyacanthus
ENSGAFG00000016191	prdm1b	96	77.340	ENSACIG00000014426	prdm1b	97	76.847	Amphilophus_citrinellus
ENSGAFG00000016191	prdm1b	56	62.121	ENSACIG00000009747	-	91	39.295	Amphilophus_citrinellus
ENSGAFG00000016191	prdm1b	94	72.635	ENSAOCG00000002230	prdm1b	98	72.804	Amphiprion_ocellaris
ENSGAFG00000016191	prdm1b	98	69.751	ENSAPEG00000019826	prdm1b	99	69.475	Amphiprion_percula
ENSGAFG00000016191	prdm1b	96	79.208	ENSATEG00000006924	prdm1b	96	78.878	Anabas_testudineus
ENSGAFG00000016191	prdm1b	63	65.152	ENSATEG00000014034	-	64	54.762	Anabas_testudineus
ENSGAFG00000016191	prdm1b	63	60.000	ENSATEG00000021017	prdm1a	70	55.747	Anabas_testudineus
ENSGAFG00000016191	prdm1b	93	81.239	ENSACLG00000005487	prdm1b	89	81.067	Astatotilapia_calliptera
ENSGAFG00000016191	prdm1b	67	59.701	ENSCSEG00000009707	prdm1a	76	54.706	Cynoglossus_semilaevis
ENSGAFG00000016191	prdm1b	62	60.000	ENSCVAG00000019081	prdm1a	72	54.913	Cyprinodon_variegatus
ENSGAFG00000016191	prdm1b	97	81.331	ENSCVAG00000016746	prdm1b	96	81.494	Cyprinodon_variegatus
ENSGAFG00000016191	prdm1b	96	85.880	ENSFHEG00000019848	prdm1b	95	85.880	Fundulus_heteroclitus
ENSGAFG00000016191	prdm1b	91	68.977	ENSGACG00000002716	prdm1b	99	68.480	Gasterosteus_aculeatus
ENSGAFG00000016191	prdm1b	93	80.887	ENSHBUG00000001475	prdm1b	95	80.717	Haplochromis_burtoni
ENSGAFG00000016191	prdm1b	97	70.874	ENSHCOG00000003617	prdm1b	97	70.550	Hippocampus_comes
ENSGAFG00000016191	prdm1b	89	54.110	ENSIPUG00000013740	prdm1b	93	54.720	Ictalurus_punctatus
ENSGAFG00000016191	prdm1b	57	56.554	ENSKMAG00000017597	prdm1a	72	56.069	Kryptolebias_marmoratus
ENSGAFG00000016191	prdm1b	91	74.650	ENSKMAG00000011218	prdm1b	90	74.476	Kryptolebias_marmoratus
ENSGAFG00000016191	prdm1b	88	39.614	ENSKMAG00000016247	-	87	40.309	Kryptolebias_marmoratus
ENSGAFG00000016191	prdm1b	96	79.242	ENSLBEG00000020955	prdm1b	99	75.824	Labrus_bergylta
ENSGAFG00000016191	prdm1b	72	79.412	ENSLOCG00000004978	prdm1b	99	52.045	Lepisosteus_oculatus
ENSGAFG00000016191	prdm1b	97	78.013	ENSMZEG00005026361	prdm1b	92	77.850	Maylandia_zebra
ENSGAFG00000016191	prdm1b	94	78.209	ENSMMOG00000013458	prdm1b	96	77.872	Mola_mola
ENSGAFG00000016191	prdm1b	87	41.004	ENSMALG00000000462	-	89	41.004	Monopterus_albus
ENSGAFG00000016191	prdm1b	96	74.220	ENSMALG00000011410	prdm1b	97	74.056	Monopterus_albus
ENSGAFG00000016191	prdm1b	53	61.650	ENSONIG00000014709	-	58	56.410	Oreochromis_niloticus
ENSGAFG00000016191	prdm1b	79	86.441	ENSONIG00000013583	prdm1b	86	69.524	Oreochromis_niloticus
ENSGAFG00000016191	prdm1b	93	69.295	ENSORLG00000010025	prdm1b	96	69.218	Oryzias_latipes
ENSGAFG00000016191	prdm1b	91	69.270	ENSORLG00015009022	prdm1b	92	69.283	Oryzias_latipes_hsok
ENSGAFG00000016191	prdm1b	81	70.349	ENSPKIG00000022335	prdm1b	96	50.070	Paramormyrops_kingsleyae
ENSGAFG00000016191	prdm1b	87	86.191	ENSPFOG00000003103	prdm1b	99	86.191	Poecilia_formosa
ENSGAFG00000016191	prdm1b	97	90.538	ENSPLAG00000018491	prdm1b	97	90.538	Poecilia_latipinna
ENSGAFG00000016191	prdm1b	97	91.843	ENSPMEG00000007869	prdm1b	97	91.843	Poecilia_mexicana
ENSGAFG00000016191	prdm1b	98	93.570	ENSPREG00000011327	prdm1b	96	93.570	Poecilia_reticulata
ENSGAFG00000016191	prdm1b	90	40.393	ENSPVAG00000011732	PRDM1	69	59.394	Pteropus_vampyrus
ENSGAFG00000016191	prdm1b	89	43.213	ENSPNAG00000028442	prdm1a	88	43.213	Pygocentrus_nattereri
ENSGAFG00000016191	prdm1b	90	58.834	ENSSFOG00015021896	prdm1b	79	73.684	Scleropages_formosus
ENSGAFG00000016191	prdm1b	91	39.369	ENSSMAG00000017518	-	90	39.369	Scophthalmus_maximus
ENSGAFG00000016191	prdm1b	97	76.252	ENSSMAG00000020467	prdm1b	98	76.040	Scophthalmus_maximus
ENSGAFG00000016191	prdm1b	97	79.355	ENSSDUG00000020610	prdm1b	97	79.194	Seriola_dumerili
ENSGAFG00000016191	prdm1b	52	68.182	ENSSDUG00000000524	-	53	55.952	Seriola_dumerili
ENSGAFG00000016191	prdm1b	97	79.512	ENSSLDG00000021973	prdm1b	98	79.350	Seriola_lalandi_dorsalis
ENSGAFG00000016191	prdm1b	52	66.667	ENSSLDG00000001957	-	53	55.357	Seriola_lalandi_dorsalis
ENSGAFG00000016191	prdm1b	91	40.552	ENSSPAG00000009830	-	91	40.552	Stegastes_partitus
ENSGAFG00000016191	prdm1b	93	78.803	ENSSPAG00000000803	prdm1b	97	77.036	Stegastes_partitus
ENSGAFG00000016191	prdm1b	50	70.000	ENSTNIG00000003926	prdm1a	64	70.000	Tetraodon_nigroviridis
ENSGAFG00000016191	prdm1b	98	93.297	ENSXCOG00000018920	prdm1b	97	93.297	Xiphophorus_couchianus
ENSGAFG00000016191	prdm1b	98	93.570	ENSXMAG00000016765	prdm1b	96	93.570	Xiphophorus_maculatus