EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000017196 (Gene tree)
Gene ID: -
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 25227 bases
Position: chrNHOQ01002129.1:833286-858512
Accession: ZDB-GENE-030131-3406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000026137	Rif1_N	PF12231.8	6.7e-83	1	1
ENSGAFP00000025813	Rif1_N	PF12231.8	4.6e-81	1	1
ENSGAFP00000025536	Rif1_N	PF12231.8	6.4e-81	1	1
ENSGAFP00000025533	Rif1_N	PF12231.8	6.4e-81	1	1
ENSGAFP00000026971	Rif1_N	PF12231.8	3.2e-75	1	1
ENSGAFP00000027005	Rif1_N	PF12231.8	6.8e-74	1	1
ENSGAFP00000026991	Rif1_N	PF12231.8	1.2e-68	1	1
ENSGAFP00000026990	Rif1_N	PF12231.8	1.2e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000025802	-	6612	-	ENSGAFP00000025536	2203 (aa)	-	-
ENSGAFT00000027249	-	6705	-	ENSGAFP00000026971	2234 (aa)	-	-
ENSGAFT00000026080	-	6348	-	ENSGAFP00000025813	2115 (aa)	-	-
ENSGAFT00000026407	-	6648	-	ENSGAFP00000026137	2215 (aa)	-	-
ENSGAFT00000025799	-	6627	-	ENSGAFP00000025533	2208 (aa)	-	-
ENSGAFT00000027282	-	6411	-	ENSGAFP00000027005	2136 (aa)	-	-
ENSGAFT00000027269	-	6531	-	ENSGAFP00000026991	2176 (aa)	-	-
ENSGAFT00000027268	-	6618	-	ENSGAFP00000026990	2205 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000017196's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000017196's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000017196	rif1	76	53.797	ENSG00000080345	RIF1	92	56.450	Homo_sapiens
ENSGAFG00000017196	rif1	99	75.770	ENSAPOG00000011073	rif1	94	75.770	Acanthochromis_polyacanthus
ENSGAFG00000017196	rif1	66	54.833	ENSAMEG00000008461	RIF1	60	54.364	Ailuropoda_melanoleuca
ENSGAFG00000017196	rif1	96	64.447	ENSACIG00000017765	rif1	97	65.654	Amphilophus_citrinellus
ENSGAFG00000017196	rif1	100	62.963	ENSAOCG00000017231	rif1	92	75.662	Amphiprion_ocellaris
ENSGAFG00000017196	rif1	97	76.239	ENSAPEG00000013228	rif1	100	76.239	Amphiprion_percula
ENSGAFG00000017196	rif1	99	76.582	ENSATEG00000022887	rif1	96	76.582	Anabas_testudineus
ENSGAFG00000017196	rif1	75	54.478	ENSAPLG00000007092	RIF1	82	46.497	Anas_platyrhynchos
ENSGAFG00000017196	rif1	73	51.368	ENSACAG00000003714	RIF1	71	48.720	Anolis_carolinensis
ENSGAFG00000017196	rif1	68	54.265	ENSANAG00000024840	RIF1	61	54.633	Aotus_nancymaae
ENSGAFG00000017196	rif1	98	51.839	ENSAMXG00000010910	rif1	89	51.728	Astyanax_mexicanus
ENSGAFG00000017196	rif1	64	55.370	ENSBTAG00000021020	RIF1	64	50.586	Bos_taurus
ENSGAFG00000017196	rif1	68	53.986	ENSCJAG00000003138	RIF1	65	50.080	Callithrix_jacchus
ENSGAFG00000017196	rif1	73	53.988	ENSCAFG00000005670	RIF1	63	54.211	Canis_familiaris
ENSGAFG00000017196	rif1	70	53.988	ENSCAFG00020016401	RIF1	64	54.211	Canis_lupus_dingo
ENSGAFG00000017196	rif1	71	53.970	ENSCHIG00000020327	RIF1	66	50.079	Capra_hircus
ENSGAFG00000017196	rif1	66	51.639	ENSTSYG00000008861	RIF1	62	48.256	Carlito_syrichta
ENSGAFG00000017196	rif1	56	41.270	ENSCAPG00000008957	RIF1	65	41.590	Cavia_aperea
ENSGAFG00000017196	rif1	66	50.989	ENSCPOG00000037898	RIF1	62	51.911	Cavia_porcellus
ENSGAFG00000017196	rif1	65	51.359	ENSCCAG00000024760	RIF1	62	48.867	Cebus_capucinus
ENSGAFG00000017196	rif1	79	51.621	ENSCATG00000033353	RIF1	66	54.313	Cercocebus_atys
ENSGAFG00000017196	rif1	64	52.720	ENSCLAG00000001517	RIF1	62	50.479	Chinchilla_lanigera
ENSGAFG00000017196	rif1	75	51.787	ENSCSAG00000016089	RIF1	65	51.057	Chlorocebus_sabaeus
ENSGAFG00000017196	rif1	66	51.111	ENSCHOG00000007187	RIF1	60	52.273	Choloepus_hoffmanni
ENSGAFG00000017196	rif1	70	51.535	ENSCPBG00000025885	RIF1	70	51.922	Chrysemys_picta_bellii
ENSGAFG00000017196	rif1	70	53.048	ENSCANG00000028962	RIF1	65	50.476	Colobus_angolensis_palliatus
ENSGAFG00000017196	rif1	68	51.537	ENSCGRG00001024589	Rif1	66	48.369	Cricetulus_griseus_chok1gshd
ENSGAFG00000017196	rif1	67	53.284	ENSCGRG00000010713	Rif1	63	52.999	Cricetulus_griseus_crigri
ENSGAFG00000017196	rif1	90	72.020	ENSCSEG00000003945	rif1	95	72.516	Cynoglossus_semilaevis
ENSGAFG00000017196	rif1	99	78.846	ENSCVAG00000022479	rif1	97	78.846	Cyprinodon_variegatus
ENSGAFG00000017196	rif1	92	60.807	ENSDARG00000062650	rif1	72	59.654	Danio_rerio
ENSGAFG00000017196	rif1	67	52.910	ENSDNOG00000011194	RIF1	61	49.245	Dasypus_novemcinctus
ENSGAFG00000017196	rif1	67	48.663	ENSETEG00000012421	RIF1	64	45.817	Echinops_telfairi
ENSGAFG00000017196	rif1	69	68.852	ENSEASG00005023434	RIF1	64	69.180	Equus_asinus_asinus
ENSGAFG00000017196	rif1	70	59.729	ENSECAG00000012679	RIF1	61	59.729	Equus_caballus
ENSGAFG00000017196	rif1	77	68.958	ENSELUG00000006826	rif1	65	68.770	Esox_lucius
ENSGAFG00000017196	rif1	69	54.011	ENSFCAG00000029742	RIF1	62	54.352	Felis_catus
ENSGAFG00000017196	rif1	59	55.154	ENSFALG00000013874	RIF1	66	55.048	Ficedula_albicollis
ENSGAFG00000017196	rif1	69	53.568	ENSFDAG00000006538	RIF1	66	50.525	Fukomys_damarensis
ENSGAFG00000017196	rif1	99	82.185	ENSFHEG00000013721	rif1	97	82.185	Fundulus_heteroclitus
ENSGAFG00000017196	rif1	68	69.075	ENSGMOG00000003517	rif1	95	69.075	Gadus_morhua
ENSGAFG00000017196	rif1	60	54.564	ENSGALG00000012484	RIF1	74	47.215	Gallus_gallus
ENSGAFG00000017196	rif1	61	74.352	ENSGACG00000008579	rif1	96	74.334	Gasterosteus_aculeatus
ENSGAFG00000017196	rif1	70	52.805	ENSGAGG00000012595	RIF1	72	53.717	Gopherus_agassizii
ENSGAFG00000017196	rif1	58	58.730	ENSGGOG00000040178	RIF1	56	58.858	Gorilla_gorilla
ENSGAFG00000017196	rif1	99	77.484	ENSHBUG00000007125	rif1	96	77.484	Haplochromis_burtoni
ENSGAFG00000017196	rif1	63	54.614	ENSHGLG00100009807	RIF1	62	54.757	Heterocephalus_glaber_male
ENSGAFG00000017196	rif1	99	71.128	ENSHCOG00000015943	rif1	86	71.579	Hippocampus_comes
ENSGAFG00000017196	rif1	76	63.031	ENSIPUG00000021703	rif1	83	53.955	Ictalurus_punctatus
ENSGAFG00000017196	rif1	69	54.798	ENSSTOG00000020712	RIF1	65	51.397	Ictidomys_tridecemlineatus
ENSGAFG00000017196	rif1	69	51.416	ENSJJAG00000023000	Rif1	68	48.478	Jaculus_jaculus
ENSGAFG00000017196	rif1	93	75.500	ENSKMAG00000002852	rif1	96	77.801	Kryptolebias_marmoratus
ENSGAFG00000017196	rif1	98	75.924	ENSLBEG00000023196	rif1	88	75.924	Labrus_bergylta
ENSGAFG00000017196	rif1	85	52.520	ENSLACG00000005425	RIF1	81	52.374	Latimeria_chalumnae
ENSGAFG00000017196	rif1	84	57.704	ENSLOCG00000002657	rif1	89	58.610	Lepisosteus_oculatus
ENSGAFG00000017196	rif1	69	54.414	ENSLAFG00000009796	RIF1	62	54.651	Loxodonta_africana
ENSGAFG00000017196	rif1	75	51.704	ENSMFAG00000032233	RIF1	66	50.278	Macaca_fascicularis
ENSGAFG00000017196	rif1	75	51.704	ENSMMUG00000008611	RIF1	66	50.278	Macaca_mulatta
ENSGAFG00000017196	rif1	70	54.216	ENSMNEG00000031616	RIF1	62	54.420	Macaca_nemestrina
ENSGAFG00000017196	rif1	75	51.621	ENSMLEG00000042945	RIF1	62	54.313	Mandrillus_leucophaeus
ENSGAFG00000017196	rif1	99	59.116	ENSMAMG00000001745	rif1	99	59.170	Mastacembelus_armatus
ENSGAFG00000017196	rif1	95	77.389	ENSMZEG00005020920	rif1	96	77.389	Maylandia_zebra
ENSGAFG00000017196	rif1	69	54.186	ENSMGAG00000012732	RIF1	71	49.760	Meleagris_gallopavo
ENSGAFG00000017196	rif1	62	66.189	ENSMAUG00000013158	Rif1	62	66.189	Mesocricetus_auratus
ENSGAFG00000017196	rif1	75	54.661	ENSMICG00000046127	RIF1	70	50.356	Microcebus_murinus
ENSGAFG00000017196	rif1	76	47.795	ENSMOCG00000009381	Rif1	70	47.910	Microtus_ochrogaster
ENSGAFG00000017196	rif1	99	72.572	ENSMMOG00000006519	rif1	96	72.572	Mola_mola
ENSGAFG00000017196	rif1	72	53.833	ENSMODG00000003703	RIF1	71	49.213	Monodelphis_domestica
ENSGAFG00000017196	rif1	94	73.862	ENSMALG00000016759	rif1	96	74.180	Monopterus_albus
ENSGAFG00000017196	rif1	66	53.201	MGP_CAROLIEiJ_G0023555	Rif1	62	53.404	Mus_caroli
ENSGAFG00000017196	rif1	64	57.843	ENSMUSG00000036202	Rif1	64	53.586	Mus_musculus
ENSGAFG00000017196	rif1	66	49.865	MGP_PahariEiJ_G0025006	Rif1	64	47.008	Mus_pahari
ENSGAFG00000017196	rif1	68	54.211	MGP_SPRETEiJ_G0024476	Rif1	64	54.304	Mus_spretus
ENSGAFG00000017196	rif1	67	54.207	ENSMPUG00000000371	RIF1	60	54.048	Mustela_putorius_furo
ENSGAFG00000017196	rif1	51	54.426	ENSMLUG00000003376	RIF1	61	47.419	Myotis_lucifugus
ENSGAFG00000017196	rif1	70	54.446	ENSNGAG00000009268	Rif1	71	49.349	Nannospalax_galili
ENSGAFG00000017196	rif1	95	75.770	ENSNBRG00000014257	rif1	96	75.770	Neolamprologus_brichardi
ENSGAFG00000017196	rif1	66	53.190	ENSNLEG00000010955	RIF1	59	53.368	Nomascus_leucogenys
ENSGAFG00000017196	rif1	71	49.821	ENSODEG00000003950	RIF1	69	47.105	Octodon_degus
ENSGAFG00000017196	rif1	92	70.007	ENSONIG00000013657	rif1	97	78.072	Oreochromis_niloticus
ENSGAFG00000017196	rif1	57	74.074	ENSOANG00000006078	-	61	55.755	Ornithorhynchus_anatinus
ENSGAFG00000017196	rif1	68	52.770	ENSOCUG00000017435	RIF1	64	50.358	Oryctolagus_cuniculus
ENSGAFG00000017196	rif1	99	72.853	ENSORLG00020001302	rif1	99	72.383	Oryzias_latipes_hni
ENSGAFG00000017196	rif1	99	73.065	ENSORLG00015000009	rif1	96	73.065	Oryzias_latipes_hsok
ENSGAFG00000017196	rif1	99	72.747	ENSOMEG00000021513	rif1	96	72.747	Oryzias_melastigma
ENSGAFG00000017196	rif1	66	55.023	ENSOGAG00000006141	RIF1	63	50.000	Otolemur_garnettii
ENSGAFG00000017196	rif1	71	54.578	ENSOARG00000008930	RIF1	66	50.514	Ovis_aries
ENSGAFG00000017196	rif1	65	53.707	ENSPPAG00000023754	RIF1	59	53.994	Pan_paniscus
ENSGAFG00000017196	rif1	69	54.389	ENSPPRG00000003618	RIF1	62	54.352	Panthera_pardus
ENSGAFG00000017196	rif1	69	54.389	ENSPTIG00000020652	RIF1	62	54.352	Panthera_tigris_altaica
ENSGAFG00000017196	rif1	65	53.797	ENSPTRG00000012534	RIF1	59	54.100	Pan_troglodytes
ENSGAFG00000017196	rif1	75	51.704	ENSPANG00000008525	RIF1	62	54.420	Papio_anubis
ENSGAFG00000017196	rif1	92	58.640	ENSPKIG00000004267	rif1	89	56.764	Paramormyrops_kingsleyae
ENSGAFG00000017196	rif1	99	58.345	ENSPMGG00000016141	rif1	92	66.350	Periophthalmus_magnuspinnatus
ENSGAFG00000017196	rif1	67	53.437	ENSPEMG00000000446	Rif1	66	50.121	Peromyscus_maniculatus_bairdii
ENSGAFG00000017196	rif1	67	54.675	ENSPCIG00000009185	RIF1	73	50.960	Phascolarctos_cinereus
ENSGAFG00000017196	rif1	92	91.560	ENSPFOG00000000554	-	96	91.560	Poecilia_formosa
ENSGAFG00000017196	rif1	99	92.714	ENSPFOG00000017804	rif1	96	92.714	Poecilia_formosa
ENSGAFG00000017196	rif1	99	91.090	ENSPLAG00000017945	rif1	97	90.909	Poecilia_latipinna
ENSGAFG00000017196	rif1	88	91.335	ENSPMEG00000006897	-	96	91.335	Poecilia_mexicana
ENSGAFG00000017196	rif1	99	92.047	ENSPREG00000018052	rif1	96	92.047	Poecilia_reticulata
ENSGAFG00000017196	rif1	76	54.159	ENSPPYG00000012846	RIF1	66	54.025	Pongo_abelii
ENSGAFG00000017196	rif1	65	54.496	ENSPCOG00000027888	RIF1	59	55.283	Propithecus_coquereli
ENSGAFG00000017196	rif1	59	60.455	ENSPVAG00000014276	RIF1	57	60.455	Pteropus_vampyrus
ENSGAFG00000017196	rif1	99	73.936	ENSPNYG00000012940	rif1	96	73.936	Pundamilia_nyererei
ENSGAFG00000017196	rif1	92	62.391	ENSPNAG00000016685	rif1	84	61.834	Pygocentrus_nattereri
ENSGAFG00000017196	rif1	67	51.066	ENSRNOG00000054901	Rif1	61	52.880	Rattus_norvegicus
ENSGAFG00000017196	rif1	70	53.490	ENSRBIG00000003704	RIF1	65	50.648	Rhinopithecus_bieti
ENSGAFG00000017196	rif1	75	51.575	ENSRROG00000028206	RIF1	65	51.189	Rhinopithecus_roxellana
ENSGAFG00000017196	rif1	68	57.143	ENSSBOG00000029530	RIF1	62	57.831	Saimiri_boliviensis_boliviensis
ENSGAFG00000017196	rif1	73	52.900	ENSSHAG00000018552	RIF1	68	50.366	Sarcophilus_harrisii
ENSGAFG00000017196	rif1	71	65.340	ENSSFOG00015021539	rif1	79	65.340	Scleropages_formosus
ENSGAFG00000017196	rif1	99	74.636	ENSSMAG00000011704	rif1	90	81.364	Scophthalmus_maximus
ENSGAFG00000017196	rif1	95	67.568	ENSSDUG00000015632	rif1	99	67.538	Seriola_dumerili
ENSGAFG00000017196	rif1	99	77.708	ENSSLDG00000019531	rif1	96	77.708	Seriola_lalandi_dorsalis
ENSGAFG00000017196	rif1	87	52.982	ENSSPUG00000003062	RIF1	66	52.895	Sphenodon_punctatus
ENSGAFG00000017196	rif1	69	72.254	ENSSPAG00000018359	rif1	99	73.123	Stegastes_partitus
ENSGAFG00000017196	rif1	69	53.963	ENSSSCG00000016395	RIF1	62	54.237	Sus_scrofa
ENSGAFG00000017196	rif1	51	54.874	ENSTGUG00000016761	RIF1	92	74.648	Taeniopygia_guttata
ENSGAFG00000017196	rif1	99	74.301	ENSTRUG00000015808	rif1	99	74.301	Takifugu_rubripes
ENSGAFG00000017196	rif1	79	73.399	ENSTNIG00000011538	rif1	96	72.970	Tetraodon_nigroviridis
ENSGAFG00000017196	rif1	58	54.321	ENSTBEG00000016082	RIF1	55	54.321	Tupaia_belangeri
ENSGAFG00000017196	rif1	69	54.344	ENSTTRG00000011190	RIF1	61	54.468	Tursiops_truncatus
ENSGAFG00000017196	rif1	55	52.283	ENSUAMG00000026385	RIF1	59	47.948	Ursus_americanus
ENSGAFG00000017196	rif1	66	54.110	ENSUMAG00000000337	RIF1	59	53.822	Ursus_maritimus
ENSGAFG00000017196	rif1	76	50.123	ENSVPAG00000002162	RIF1	70	47.966	Vicugna_pacos
ENSGAFG00000017196	rif1	76	52.381	ENSVVUG00000011293	RIF1	66	54.316	Vulpes_vulpes
ENSGAFG00000017196	rif1	80	50.857	ENSXETG00000004530	rif1	78	45.133	Xenopus_tropicalis
ENSGAFG00000017196	rif1	97	95.652	ENSXMAG00000000506	rif1	90	95.960	Xiphophorus_maculatus