EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000017236 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 17336 bases
Position: chrNHOQ01001369.1:1258948-1276283
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000025525	RRM_1	PF00076.22	1.2e-14	1	2
ENSGAFP00000025525	RRM_1	PF00076.22	1.2e-14	2	2
ENSGAFP00000025528	RRM_1	PF00076.22	1.2e-14	1	2
ENSGAFP00000025528	RRM_1	PF00076.22	1.2e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000025794	-	1635	-	ENSGAFP00000025528	508 (aa)	-	-
ENSGAFT00000025791	-	2368	-	ENSGAFP00000025525	508 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000017236's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000017236's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000017236	rnpc3	96	52.716	ENSG00000185946	RNPC3	96	56.391	Homo_sapiens
ENSGAFG00000017236	rnpc3	100	78.824	ENSAPOG00000017371	rnpc3	100	78.669	Acanthochromis_polyacanthus
ENSGAFG00000017236	rnpc3	96	53.106	ENSAMEG00000001694	RNPC3	95	52.663	Ailuropoda_melanoleuca
ENSGAFG00000017236	rnpc3	99	73.828	ENSACIG00000021043	rnpc3	99	73.819	Amphilophus_citrinellus
ENSGAFG00000017236	rnpc3	100	79.648	ENSAOCG00000014052	rnpc3	98	78.824	Amphiprion_ocellaris
ENSGAFG00000017236	rnpc3	100	79.452	ENSAPEG00000008739	rnpc3	98	78.627	Amphiprion_percula
ENSGAFG00000017236	rnpc3	100	77.132	ENSATEG00000021263	rnpc3	100	77.132	Anabas_testudineus
ENSGAFG00000017236	rnpc3	89	55.022	ENSAPLG00000015605	RNPC3	99	55.459	Anas_platyrhynchos
ENSGAFG00000017236	rnpc3	96	54.251	ENSACAG00000002029	RNPC3	96	51.984	Anolis_carolinensis
ENSGAFG00000017236	rnpc3	96	52.610	ENSANAG00000019950	RNPC3	95	52.610	Aotus_nancymaae
ENSGAFG00000017236	rnpc3	99	77.515	ENSACLG00000014702	rnpc3	99	77.515	Astatotilapia_calliptera
ENSGAFG00000017236	rnpc3	99	62.768	ENSAMXG00000033372	rnpc3	99	62.768	Astyanax_mexicanus
ENSGAFG00000017236	rnpc3	96	53.320	ENSBTAG00000019091	RNPC3	95	53.119	Bos_taurus
ENSGAFG00000017236	rnpc3	96	52.600	ENSCJAG00000035686	RNPC3	94	51.984	Callithrix_jacchus
ENSGAFG00000017236	rnpc3	96	53.187	ENSCAFG00000019972	RNPC3	94	53.200	Canis_familiaris
ENSGAFG00000017236	rnpc3	96	53.213	ENSCAFG00020011300	RNPC3	96	52.767	Canis_lupus_dingo
ENSGAFG00000017236	rnpc3	96	54.108	ENSCHIG00000020361	RNPC3	95	53.012	Capra_hircus
ENSGAFG00000017236	rnpc3	96	53.414	ENSTSYG00000030256	RNPC3	95	53.414	Carlito_syrichta
ENSGAFG00000017236	rnpc3	86	43.919	ENSCAPG00000013600	RNPC3	97	44.118	Cavia_aperea
ENSGAFG00000017236	rnpc3	96	52.209	ENSCPOG00000031638	RNPC3	95	52.400	Cavia_porcellus
ENSGAFG00000017236	rnpc3	96	52.811	ENSCCAG00000024301	RNPC3	95	52.811	Cebus_capucinus
ENSGAFG00000017236	rnpc3	96	40.644	ENSCATG00000035930	-	52	46.964	Cercocebus_atys
ENSGAFG00000017236	rnpc3	96	52.610	ENSCATG00000002086	RNPC3	94	53.000	Cercocebus_atys
ENSGAFG00000017236	rnpc3	96	50.586	ENSCLAG00000005169	RNPC3	95	51.308	Chinchilla_lanigera
ENSGAFG00000017236	rnpc3	96	52.610	ENSCSAG00000001519	RNPC3	94	53.000	Chlorocebus_sabaeus
ENSGAFG00000017236	rnpc3	97	55.489	ENSCPBG00000028311	RNPC3	95	55.888	Chrysemys_picta_bellii
ENSGAFG00000017236	rnpc3	94	35.950	ENSCSAVG00000002800	-	76	53.488	Ciona_savignyi
ENSGAFG00000017236	rnpc3	96	52.209	ENSCANG00000031444	RNPC3	94	52.600	Colobus_angolensis_palliatus
ENSGAFG00000017236	rnpc3	96	53.507	ENSCGRG00001019276	Rnpc3	95	53.320	Cricetulus_griseus_chok1gshd
ENSGAFG00000017236	rnpc3	89	51.410	ENSCGRG00000000053	Rnpc3	99	51.198	Cricetulus_griseus_crigri
ENSGAFG00000017236	rnpc3	99	72.134	ENSCSEG00000013475	rnpc3	99	72.530	Cynoglossus_semilaevis
ENSGAFG00000017236	rnpc3	100	85.547	ENSCVAG00000002645	rnpc3	100	85.214	Cyprinodon_variegatus
ENSGAFG00000017236	rnpc3	99	63.386	ENSDARG00000011247	rnpc3	99	63.976	Danio_rerio
ENSGAFG00000017236	rnpc3	96	52.716	ENSDNOG00000044555	-	95	52.906	Dasypus_novemcinctus
ENSGAFG00000017236	rnpc3	96	53.320	ENSDNOG00000047498	-	95	53.507	Dasypus_novemcinctus
ENSGAFG00000017236	rnpc3	98	52.381	ENSDORG00000027343	Rnpc3	96	52.381	Dipodomys_ordii
ENSGAFG00000017236	rnpc3	97	49.126	ENSEBUG00000002068	rnpc3	96	48.627	Eptatretus_burgeri
ENSGAFG00000017236	rnpc3	96	54.092	ENSEASG00005015957	RNPC3	94	54.092	Equus_asinus_asinus
ENSGAFG00000017236	rnpc3	96	54.691	ENSECAG00000021148	RNPC3	94	54.491	Equus_caballus
ENSGAFG00000017236	rnpc3	99	66.603	ENSELUG00000002264	rnpc3	99	64.762	Esox_lucius
ENSGAFG00000017236	rnpc3	98	52.883	ENSFCAG00000024312	RNPC3	96	52.871	Felis_catus
ENSGAFG00000017236	rnpc3	89	55.195	ENSFALG00000002580	RNPC3	99	55.195	Ficedula_albicollis
ENSGAFG00000017236	rnpc3	96	52.811	ENSFDAG00000019948	RNPC3	95	53.000	Fukomys_damarensis
ENSGAFG00000017236	rnpc3	100	77.362	ENSFHEG00000020647	rnpc3	100	76.621	Fundulus_heteroclitus
ENSGAFG00000017236	rnpc3	100	66.797	ENSGMOG00000019213	rnpc3	99	66.145	Gadus_morhua
ENSGAFG00000017236	rnpc3	97	55.888	ENSGALG00000005162	RNPC3	88	55.800	Gallus_gallus
ENSGAFG00000017236	rnpc3	100	75.728	ENSGACG00000002048	rnpc3	99	75.534	Gasterosteus_aculeatus
ENSGAFG00000017236	rnpc3	97	56.487	ENSGAGG00000008438	RNPC3	94	56.687	Gopherus_agassizii
ENSGAFG00000017236	rnpc3	97	47.379	ENSGGOG00000026201	-	95	47.177	Gorilla_gorilla
ENSGAFG00000017236	rnpc3	83	77.083	ENSHBUG00000015966	rnpc3	85	77.083	Haplochromis_burtoni
ENSGAFG00000017236	rnpc3	96	52.811	ENSHGLG00000001708	RNPC3	95	52.800	Heterocephalus_glaber_female
ENSGAFG00000017236	rnpc3	96	52.811	ENSHGLG00100003005	RNPC3	95	52.800	Heterocephalus_glaber_male
ENSGAFG00000017236	rnpc3	99	73.281	ENSHCOG00000017135	rnpc3	100	73.281	Hippocampus_comes
ENSGAFG00000017236	rnpc3	99	61.176	ENSIPUG00000002916	rnpc3	99	61.765	Ictalurus_punctatus
ENSGAFG00000017236	rnpc3	96	52.600	ENSSTOG00000025020	RNPC3	95	52.381	Ictidomys_tridecemlineatus
ENSGAFG00000017236	rnpc3	96	53.307	ENSJJAG00000010203	Rnpc3	96	53.175	Jaculus_jaculus
ENSGAFG00000017236	rnpc3	99	80.198	ENSKMAG00000017358	rnpc3	99	79.406	Kryptolebias_marmoratus
ENSGAFG00000017236	rnpc3	100	77.255	ENSLBEG00000024901	rnpc3	98	77.255	Labrus_bergylta
ENSGAFG00000017236	rnpc3	99	55.186	ENSLACG00000005720	RNPC3	92	53.216	Latimeria_chalumnae
ENSGAFG00000017236	rnpc3	99	59.961	ENSLOCG00000007986	rnpc3	98	58.580	Lepisosteus_oculatus
ENSGAFG00000017236	rnpc3	96	53.507	ENSLAFG00000032342	RNPC3	97	53.010	Loxodonta_africana
ENSGAFG00000017236	rnpc3	96	39.798	ENSMFAG00000002917	-	54	46.586	Macaca_fascicularis
ENSGAFG00000017236	rnpc3	96	52.610	ENSMFAG00000002004	RNPC3	94	53.000	Macaca_fascicularis
ENSGAFG00000017236	rnpc3	79	48.624	ENSMMUG00000002098	-	84	48.624	Macaca_mulatta
ENSGAFG00000017236	rnpc3	96	52.410	ENSMMUG00000018039	RNPC3	94	52.800	Macaca_mulatta
ENSGAFG00000017236	rnpc3	96	49.598	ENSMNEG00000033950	RNPC3	94	50.000	Macaca_nemestrina
ENSGAFG00000017236	rnpc3	96	40.079	ENSMLEG00000034644	-	95	40.119	Mandrillus_leucophaeus
ENSGAFG00000017236	rnpc3	96	52.610	ENSMLEG00000033628	RNPC3	94	53.000	Mandrillus_leucophaeus
ENSGAFG00000017236	rnpc3	100	69.020	ENSMAMG00000007496	rnpc3	100	69.020	Mastacembelus_armatus
ENSGAFG00000017236	rnpc3	99	77.087	ENSMZEG00005020233	rnpc3	99	76.608	Maylandia_zebra
ENSGAFG00000017236	rnpc3	89	54.978	ENSMGAG00000006381	RNPC3	99	54.978	Meleagris_gallopavo
ENSGAFG00000017236	rnpc3	96	54.217	ENSMAUG00000001358	Rnpc3	95	54.217	Mesocricetus_auratus
ENSGAFG00000017236	rnpc3	96	53.507	ENSMICG00000029591	RNPC3	95	53.693	Microcebus_murinus
ENSGAFG00000017236	rnpc3	96	53.521	ENSMOCG00000013423	Rnpc3	94	53.521	Microtus_ochrogaster
ENSGAFG00000017236	rnpc3	100	70.138	ENSMMOG00000005309	rnpc3	100	71.120	Mola_mola
ENSGAFG00000017236	rnpc3	97	53.800	ENSMODG00000002946	RNPC3	95	53.000	Monodelphis_domestica
ENSGAFG00000017236	rnpc3	99	71.765	ENSMALG00000015471	rnpc3	100	71.765	Monopterus_albus
ENSGAFG00000017236	rnpc3	96	54.200	MGP_CAROLIEiJ_G0025555	Rnpc3	96	54.032	Mus_caroli
ENSGAFG00000017236	rnpc3	96	53.785	ENSMUSG00000027981	Rnpc3	99	51.907	Mus_musculus
ENSGAFG00000017236	rnpc3	98	53.346	MGP_PahariEiJ_G0027001	Rnpc3	97	53.175	Mus_pahari
ENSGAFG00000017236	rnpc3	96	50.579	MGP_SPRETEiJ_G0026505	Rnpc3	96	53.614	Mus_spretus
ENSGAFG00000017236	rnpc3	96	53.119	ENSMPUG00000007349	RNPC3	96	52.485	Mustela_putorius_furo
ENSGAFG00000017236	rnpc3	96	54.049	ENSMLUG00000028743	RNPC3	94	53.831	Myotis_lucifugus
ENSGAFG00000017236	rnpc3	96	53.012	ENSNGAG00000010939	Rnpc3	95	53.012	Nannospalax_galili
ENSGAFG00000017236	rnpc3	99	77.712	ENSNBRG00000012196	rnpc3	96	77.712	Neolamprologus_brichardi
ENSGAFG00000017236	rnpc3	96	52.716	ENSNLEG00000012013	RNPC3	95	53.106	Nomascus_leucogenys
ENSGAFG00000017236	rnpc3	96	52.834	ENSODEG00000007612	RNPC3	95	52.834	Octodon_degus
ENSGAFG00000017236	rnpc3	99	78.346	ENSONIG00000004770	rnpc3	100	78.543	Oreochromis_niloticus
ENSGAFG00000017236	rnpc3	92	54.661	ENSOANG00000008220	RNPC3	99	54.832	Ornithorhynchus_anatinus
ENSGAFG00000017236	rnpc3	96	53.707	ENSOCUG00000004016	RNPC3	95	53.600	Oryctolagus_cuniculus
ENSGAFG00000017236	rnpc3	100	76.471	ENSORLG00000005694	rnpc3	100	76.275	Oryzias_latipes
ENSGAFG00000017236	rnpc3	100	76.667	ENSORLG00020005513	rnpc3	100	76.667	Oryzias_latipes_hni
ENSGAFG00000017236	rnpc3	100	76.471	ENSORLG00015002179	rnpc3	100	76.275	Oryzias_latipes_hsok
ENSGAFG00000017236	rnpc3	100	77.451	ENSOMEG00000017737	rnpc3	100	77.451	Oryzias_melastigma
ENSGAFG00000017236	rnpc3	98	54.012	ENSOGAG00000026182	RNPC3	97	54.012	Otolemur_garnettii
ENSGAFG00000017236	rnpc3	96	54.108	ENSOARG00000018719	RNPC3	95	53.012	Ovis_aries
ENSGAFG00000017236	rnpc3	97	47.295	ENSPPAG00000030278	-	97	47.295	Pan_paniscus
ENSGAFG00000017236	rnpc3	96	52.705	ENSPPAG00000037459	RNPC3	95	53.094	Pan_paniscus
ENSGAFG00000017236	rnpc3	98	53.280	ENSPPRG00000020246	RNPC3	96	53.267	Panthera_pardus
ENSGAFG00000017236	rnpc3	98	53.280	ENSPTIG00000009887	RNPC3	97	53.267	Panthera_tigris_altaica
ENSGAFG00000017236	rnpc3	96	52.410	ENSPTRG00000033902	RNPC3	95	52.800	Pan_troglodytes
ENSGAFG00000017236	rnpc3	97	46.976	ENSPTRG00000044227	-	97	46.976	Pan_troglodytes
ENSGAFG00000017236	rnpc3	96	42.000	ENSPANG00000029957	-	51	45.783	Papio_anubis
ENSGAFG00000017236	rnpc3	96	52.716	ENSPANG00000012137	RNPC3	94	53.106	Papio_anubis
ENSGAFG00000017236	rnpc3	99	61.450	ENSPKIG00000008828	rnpc3	99	59.690	Paramormyrops_kingsleyae
ENSGAFG00000017236	rnpc3	65	53.134	ENSPSIG00000007396	RNPC3	99	54.627	Pelodiscus_sinensis
ENSGAFG00000017236	rnpc3	100	63.867	ENSPMGG00000011742	rnpc3	99	63.477	Periophthalmus_magnuspinnatus
ENSGAFG00000017236	rnpc3	89	50.980	ENSPEMG00000020112	Rnpc3	99	50.980	Peromyscus_maniculatus_bairdii
ENSGAFG00000017236	rnpc3	98	42.251	ENSPMAG00000003778	rnpc3	97	45.905	Petromyzon_marinus
ENSGAFG00000017236	rnpc3	97	54.418	ENSPCIG00000004415	-	95	53.924	Phascolarctos_cinereus
ENSGAFG00000017236	rnpc3	100	94.106	ENSPFOG00000009895	rnpc3	100	94.106	Poecilia_formosa
ENSGAFG00000017236	rnpc3	100	93.320	ENSPLAG00000012023	rnpc3	100	93.320	Poecilia_latipinna
ENSGAFG00000017236	rnpc3	100	94.303	ENSPMEG00000003663	rnpc3	100	94.303	Poecilia_mexicana
ENSGAFG00000017236	rnpc3	100	93.307	ENSPREG00000010206	rnpc3	100	93.307	Poecilia_reticulata
ENSGAFG00000017236	rnpc3	81	48.441	ENSPPYG00000001102	RNPC3	93	48.926	Pongo_abelii
ENSGAFG00000017236	rnpc3	99	77.318	ENSPNYG00000020603	rnpc3	99	77.318	Pundamilia_nyererei
ENSGAFG00000017236	rnpc3	96	54.200	ENSRNOG00000017310	Rnpc3	95	54.200	Rattus_norvegicus
ENSGAFG00000017236	rnpc3	96	48.898	ENSRBIG00000043897	RNPC3	94	49.301	Rhinopithecus_bieti
ENSGAFG00000017236	rnpc3	96	52.610	ENSRROG00000032334	RNPC3	94	53.000	Rhinopithecus_roxellana
ENSGAFG00000017236	rnpc3	96	52.515	ENSSBOG00000024473	RNPC3	96	52.087	Saimiri_boliviensis_boliviensis
ENSGAFG00000017236	rnpc3	97	53.722	ENSSHAG00000011859	RNPC3	95	52.883	Sarcophilus_harrisii
ENSGAFG00000017236	rnpc3	99	64.786	ENSSFOG00015013055	rnpc3	99	66.600	Scleropages_formosus
ENSGAFG00000017236	rnpc3	100	75.340	ENSSMAG00000020346	rnpc3	100	72.233	Scophthalmus_maximus
ENSGAFG00000017236	rnpc3	100	77.583	ENSSDUG00000006600	rnpc3	100	77.583	Seriola_dumerili
ENSGAFG00000017236	rnpc3	100	77.583	ENSSLDG00000007979	rnpc3	100	77.583	Seriola_lalandi_dorsalis
ENSGAFG00000017236	rnpc3	97	51.303	ENSSPUG00000003872	-	92	52.305	Sphenodon_punctatus
ENSGAFG00000017236	rnpc3	95	56.389	ENSSPUG00000008539	-	92	56.998	Sphenodon_punctatus
ENSGAFG00000017236	rnpc3	100	78.937	ENSSPAG00000005633	rnpc3	100	77.362	Stegastes_partitus
ENSGAFG00000017236	rnpc3	96	51.852	ENSSSCG00000037254	RNPC3	95	52.918	Sus_scrofa
ENSGAFG00000017236	rnpc3	89	54.881	ENSTGUG00000004795	-	99	54.923	Taeniopygia_guttata
ENSGAFG00000017236	rnpc3	99	72.994	ENSTNIG00000018963	rnpc3	100	72.211	Tetraodon_nigroviridis
ENSGAFG00000017236	rnpc3	96	53.213	ENSUMAG00000007775	RNPC3	96	53.200	Ursus_maritimus
ENSGAFG00000017236	rnpc3	96	53.213	ENSVVUG00000000331	RNPC3	96	52.767	Vulpes_vulpes
ENSGAFG00000017236	rnpc3	98	44.291	ENSXETG00000025027	rnpc3	97	44.158	Xenopus_tropicalis
ENSGAFG00000017236	rnpc3	54	93.382	ENSXCOG00000005013	rnpc3	100	92.486	Xiphophorus_couchianus
ENSGAFG00000017236	rnpc3	100	96.260	ENSXMAG00000006495	rnpc3	100	96.260	Xiphophorus_maculatus