EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000017709 (Gene tree)
Gene ID: -
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin 1b
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 17850 bases
Position: chrNHOQ01002284.1:3143346-3161195
Accession: ZDB-GENE-080723-7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000026225	Nucleoplasmin	PF03066.15	8.5e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000026496	-	2762	-	ENSGAFP00000026225	296 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000017709's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000017709's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000017709	npm1b	96	39.735	ENSGAFG00000013059	npm1a	97	40.066

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000017709	npm1b	100	77.852	ENSAPOG00000004268	npm1b	100	79.195	Acanthochromis_polyacanthus
ENSGAFG00000017709	npm1b	100	77.517	ENSAOCG00000012549	npm1b	100	77.181	Amphiprion_ocellaris
ENSGAFG00000017709	npm1b	100	76.846	ENSAPEG00000000868	npm1b	100	75.839	Amphiprion_percula
ENSGAFG00000017709	npm1b	100	77.592	ENSATEG00000006254	npm1b	100	77.592	Anabas_testudineus
ENSGAFG00000017709	npm1b	98	44.118	ENSACAG00000015626	-	100	44.079	Anolis_carolinensis
ENSGAFG00000017709	npm1b	98	58.609	ENSAMXG00000042148	npm1b	99	55.629	Astyanax_mexicanus
ENSGAFG00000017709	npm1b	64	34.500	ENSCAFG00000023359	-	63	33.929	Canis_familiaris
ENSGAFG00000017709	npm1b	98	42.071	ENSCPBG00000021221	-	60	42.810	Chrysemys_picta_bellii
ENSGAFG00000017709	npm1b	100	71.667	ENSCSEG00000004530	npm1b	100	71.000	Cynoglossus_semilaevis
ENSGAFG00000017709	npm1b	100	88.552	ENSCVAG00000013016	npm1b	100	88.552	Cyprinodon_variegatus
ENSGAFG00000017709	npm1b	99	62.126	ENSDARG00000037675	npm1b	99	60.927	Danio_rerio
ENSGAFG00000017709	npm1b	99	60.526	ENSELUG00000022123	npm1b	99	60.526	Esox_lucius
ENSGAFG00000017709	npm1b	94	44.027	ENSFALG00000003320	-	94	41.781	Ficedula_albicollis
ENSGAFG00000017709	npm1b	100	87.960	ENSFHEG00000020794	npm1b	100	88.294	Fundulus_heteroclitus
ENSGAFG00000017709	npm1b	98	58.503	ENSGMOG00000002689	npm1b	100	58.503	Gadus_morhua
ENSGAFG00000017709	npm1b	98	43.934	ENSGALG00000002197	-	73	39.667	Gallus_gallus
ENSGAFG00000017709	npm1b	98	73.379	ENSGACG00000016706	npm1b	100	73.379	Gasterosteus_aculeatus
ENSGAFG00000017709	npm1b	98	40.584	ENSGAGG00000020250	-	100	42.105	Gopherus_agassizii
ENSGAFG00000017709	npm1b	100	76.589	ENSHBUG00000019903	npm1b	95	79.264	Haplochromis_burtoni
ENSGAFG00000017709	npm1b	100	68.333	ENSHCOG00000003895	npm1b	100	68.000	Hippocampus_comes
ENSGAFG00000017709	npm1b	99	55.667	ENSIPUG00000020165	npm1b	99	55.000	Ictalurus_punctatus
ENSGAFG00000017709	npm1b	99	84.354	ENSKMAG00000008260	npm1b	99	85.034	Kryptolebias_marmoratus
ENSGAFG00000017709	npm1b	92	41.356	ENSLACG00000001779	-	100	39.116	Latimeria_chalumnae
ENSGAFG00000017709	npm1b	94	46.557	ENSLOCG00000001942	npm1b	100	47.869	Lepisosteus_oculatus
ENSGAFG00000017709	npm1b	72	72.603	ENSMAMG00000015335	npm1b	100	73.516	Mastacembelus_armatus
ENSGAFG00000017709	npm1b	93	43.310	ENSMGAG00000001591	-	100	38.710	Meleagris_gallopavo
ENSGAFG00000017709	npm1b	81	75.620	ENSMALG00000015383	npm1b	100	75.620	Monopterus_albus
ENSGAFG00000017709	npm1b	99	67.110	ENSONIG00000001397	npm1b	98	69.935	Oreochromis_niloticus
ENSGAFG00000017709	npm1b	100	63.851	ENSOMEG00000003414	npm1b	100	62.838	Oryzias_melastigma
ENSGAFG00000017709	npm1b	99	57.655	ENSPKIG00000020050	npm1b	99	57.655	Paramormyrops_kingsleyae
ENSGAFG00000017709	npm1b	96	42.617	ENSPSIG00000011204	-	92	41.438	Pelodiscus_sinensis
ENSGAFG00000017709	npm1b	100	93.603	ENSPFOG00000018357	npm1b	100	93.603	Poecilia_formosa
ENSGAFG00000017709	npm1b	98	57.191	ENSPNAG00000005498	npm1b	99	55.184	Pygocentrus_nattereri
ENSGAFG00000017709	npm1b	99	56.040	ENSSFOG00015005064	npm1b	100	56.711	Scleropages_formosus
ENSGAFG00000017709	npm1b	100	70.370	ENSSMAG00000008088	npm1b	100	70.370	Scophthalmus_maximus
ENSGAFG00000017709	npm1b	100	78.188	ENSSDUG00000007726	npm1b	100	78.188	Seriola_dumerili
ENSGAFG00000017709	npm1b	100	78.523	ENSSLDG00000021396	npm1b	100	78.523	Seriola_lalandi_dorsalis
ENSGAFG00000017709	npm1b	51	49.068	ENSSPUG00000017271	-	55	54.545	Sphenodon_punctatus
ENSGAFG00000017709	npm1b	100	80.201	ENSSPAG00000011152	npm1b	100	78.859	Stegastes_partitus
ENSGAFG00000017709	npm1b	93	42.612	ENSTGUG00000014970	-	100	39.721	Taeniopygia_guttata
ENSGAFG00000017709	npm1b	100	70.667	ENSTRUG00000008105	npm1b	95	67.667	Takifugu_rubripes
ENSGAFG00000017709	npm1b	99	68.667	ENSTNIG00000013057	npm1b	100	67.000	Tetraodon_nigroviridis
ENSGAFG00000017709	npm1b	99	40.385	ENSXETG00000008403	npm1	100	40.523	Xenopus_tropicalis
ENSGAFG00000017709	npm1b	100	96.633	ENSXMAG00000001986	npm1b	100	96.633	Xiphophorus_maculatus