EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000017731 (Gene tree)
Gene ID: -
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 10571 bases
Position: chrNHOQ01000347.1:2510117-2520687
Accession: ZDB-GENE-021125-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000026269	ResIII	PF04851.15	6.3e-11	1	1
ENSGAFP00000026269	DEAD	PF00270.29	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000026539	-	4058	-	ENSGAFP00000026269	1035 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000017731's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000017731's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000017731	smarca5	51	41.012	ENSGAFG00000014337	-	90	43.045
ENSGAFG00000017731	smarca5	52	31.336	ENSGAFG00000007901	rad54b	68	31.336
ENSGAFG00000017731	smarca5	52	41.166	ENSGAFG00000018198	chd1l	61	40.037

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000017731	smarca5	95	82.828	ENSG00000102038	SMARCA1	93	83.503	Homo_sapiens
ENSGAFG00000017731	smarca5	100	97.297	ENSAPOG00000016035	smarca5	100	97.297	Acanthochromis_polyacanthus
ENSGAFG00000017731	smarca5	95	82.036	ENSAMEG00000015218	SMARCA1	93	82.596	Ailuropoda_melanoleuca
ENSGAFG00000017731	smarca5	87	98.224	ENSACIG00000016982	smarca5	100	98.224	Amphilophus_citrinellus
ENSGAFG00000017731	smarca5	100	97.297	ENSAOCG00000015578	smarca5	100	97.297	Amphiprion_ocellaris
ENSGAFG00000017731	smarca5	100	97.297	ENSAPEG00000011117	smarca5	100	97.297	Amphiprion_percula
ENSGAFG00000017731	smarca5	100	97.198	ENSATEG00000012894	smarca5	100	97.198	Anabas_testudineus
ENSGAFG00000017731	smarca5	95	84.114	ENSAPLG00000013149	SMARCA1	99	84.114	Anas_platyrhynchos
ENSGAFG00000017731	smarca5	98	82.255	ENSACAG00000011376	SMARCA1	94	84.725	Anolis_carolinensis
ENSGAFG00000017731	smarca5	95	78.182	ENSANAG00000023098	SMARCA1	93	78.819	Aotus_nancymaae
ENSGAFG00000017731	smarca5	100	97.394	ENSACLG00000025356	smarca5	100	97.394	Astatotilapia_calliptera
ENSGAFG00000017731	smarca5	90	84.425	ENSAMXG00000011227	smarca1	99	85.525	Astyanax_mexicanus
ENSGAFG00000017731	smarca5	100	90.970	ENSAMXG00000005709	smarca5	100	90.743	Astyanax_mexicanus
ENSGAFG00000017731	smarca5	95	83.180	ENSBTAG00000002292	SMARCA1	91	83.455	Bos_taurus
ENSGAFG00000017731	smarca5	95	63.174	WBGene00002169	isw-1	95	63.777	Caenorhabditis_elegans
ENSGAFG00000017731	smarca5	95	83.503	ENSCJAG00000002868	SMARCA1	93	83.503	Callithrix_jacchus
ENSGAFG00000017731	smarca5	95	73.684	ENSCAFG00000018673	SMARCA1	99	75.410	Canis_familiaris
ENSGAFG00000017731	smarca5	95	83.030	ENSCAFG00020001751	SMARCA1	93	83.605	Canis_lupus_dingo
ENSGAFG00000017731	smarca5	95	82.877	ENSCHIG00000009837	SMARCA1	92	83.198	Capra_hircus
ENSGAFG00000017731	smarca5	95	83.030	ENSTSYG00000004240	SMARCA1	94	84.477	Carlito_syrichta
ENSGAFG00000017731	smarca5	95	81.426	ENSCPOG00000013601	SMARCA1	93	81.984	Cavia_porcellus
ENSGAFG00000017731	smarca5	95	80.101	ENSCCAG00000030817	SMARCA1	93	80.754	Cebus_capucinus
ENSGAFG00000017731	smarca5	93	83.851	ENSCATG00000015921	SMARCA1	93	82.495	Cercocebus_atys
ENSGAFG00000017731	smarca5	95	82.121	ENSCLAG00000002171	SMARCA1	93	82.688	Chinchilla_lanigera
ENSGAFG00000017731	smarca5	95	82.828	ENSCSAG00000008460	SMARCA1	93	83.503	Chlorocebus_sabaeus
ENSGAFG00000017731	smarca5	95	84.093	ENSCPBG00000001146	SMARCA1	93	84.420	Chrysemys_picta_bellii
ENSGAFG00000017731	smarca5	96	73.831	ENSCING00000004110	swi/snf	99	73.518	Ciona_intestinalis
ENSGAFG00000017731	smarca5	96	73.366	ENSCSAVG00000004620	-	99	75.727	Ciona_savignyi
ENSGAFG00000017731	smarca5	95	82.929	ENSCANG00000007183	SMARCA1	93	83.605	Colobus_angolensis_palliatus
ENSGAFG00000017731	smarca5	95	81.919	ENSCGRG00001010776	Smarca1	93	82.485	Cricetulus_griseus_chok1gshd
ENSGAFG00000017731	smarca5	95	81.459	ENSCGRG00000015301	Smarca1	97	81.584	Cricetulus_griseus_crigri
ENSGAFG00000017731	smarca5	100	96.135	ENSCSEG00000000328	smarca5	100	96.135	Cynoglossus_semilaevis
ENSGAFG00000017731	smarca5	100	98.744	ENSCVAG00000008668	smarca5	100	98.744	Cyprinodon_variegatus
ENSGAFG00000017731	smarca5	94	82.583	ENSDARG00000012776	smarca1	99	80.680	Danio_rerio
ENSGAFG00000017731	smarca5	100	90.848	ENSDARG00000052348	smarca5	100	90.347	Danio_rerio
ENSGAFG00000017731	smarca5	93	83.644	ENSDNOG00000004315	SMARCA1	91	84.411	Dasypus_novemcinctus
ENSGAFG00000017731	smarca5	97	81.070	ENSDORG00000009270	Smarca1	90	84.411	Dipodomys_ordii
ENSGAFG00000017731	smarca5	96	72.976	FBgn0011604	Iswi	99	72.351	Drosophila_melanogaster
ENSGAFG00000017731	smarca5	78	81.818	ENSETEG00000017426	SMARCA1	83	81.818	Echinops_telfairi
ENSGAFG00000017731	smarca5	97	80.952	ENSEBUG00000001239	smarca5	99	80.735	Eptatretus_burgeri
ENSGAFG00000017731	smarca5	95	79.150	ENSEASG00005008218	SMARCA1	99	79.555	Equus_asinus_asinus
ENSGAFG00000017731	smarca5	95	82.929	ENSECAG00000012106	SMARCA1	92	83.503	Equus_caballus
ENSGAFG00000017731	smarca5	77	84.106	ENSEEUG00000014927	SMARCA1	80	84.106	Erinaceus_europaeus
ENSGAFG00000017731	smarca5	94	84.270	ENSELUG00000010515	smarca1	96	84.270	Esox_lucius
ENSGAFG00000017731	smarca5	95	82.929	ENSFCAG00000018496	SMARCA1	93	83.503	Felis_catus
ENSGAFG00000017731	smarca5	88	85.120	ENSFALG00000000209	SMARCA1	98	85.120	Ficedula_albicollis
ENSGAFG00000017731	smarca5	93	82.311	ENSFDAG00000009818	SMARCA1	94	83.037	Fukomys_damarensis
ENSGAFG00000017731	smarca5	100	97.419	ENSFHEG00000007687	smarca5	100	97.419	Fundulus_heteroclitus
ENSGAFG00000017731	smarca5	96	82.200	ENSGALG00000008431	SMARCA1	95	85.266	Gallus_gallus
ENSGAFG00000017731	smarca5	94	84.568	ENSGAGG00000023575	SMARCA1	99	84.568	Gopherus_agassizii
ENSGAFG00000017731	smarca5	70	96.000	ENSGGOG00000012841	-	92	79.708	Gorilla_gorilla
ENSGAFG00000017731	smarca5	95	82.020	ENSHGLG00000003080	SMARCA1	93	82.587	Heterocephalus_glaber_female
ENSGAFG00000017731	smarca5	95	81.526	ENSHGLG00100001102	SMARCA1	99	82.085	Heterocephalus_glaber_male
ENSGAFG00000017731	smarca5	100	96.429	ENSHCOG00000005458	smarca5	100	96.429	Hippocampus_comes
ENSGAFG00000017731	smarca5	96	82.522	ENSIPUG00000016905	Smarca1	99	84.216	Ictalurus_punctatus
ENSGAFG00000017731	smarca5	100	90.541	ENSIPUG00000005229	SMARCA5	99	92.223	Ictalurus_punctatus
ENSGAFG00000017731	smarca5	95	82.828	ENSSTOG00000014524	SMARCA1	97	81.592	Ictidomys_tridecemlineatus
ENSGAFG00000017731	smarca5	95	81.508	ENSJJAG00000002593	Smarca1	93	82.067	Jaculus_jaculus
ENSGAFG00000017731	smarca5	100	98.068	ENSKMAG00000003777	smarca5	100	98.068	Kryptolebias_marmoratus
ENSGAFG00000017731	smarca5	100	95.845	ENSLBEG00000018112	smarca5	100	95.845	Labrus_bergylta
ENSGAFG00000017731	smarca5	94	95.906	ENSLBEG00000013295	SMARCA1	100	97.342	Labrus_bergylta
ENSGAFG00000017731	smarca5	95	84.709	ENSLACG00000016697	SMARCA1	95	85.464	Latimeria_chalumnae
ENSGAFG00000017731	smarca5	94	85.875	ENSLOCG00000014591	smarca1	95	85.875	Lepisosteus_oculatus
ENSGAFG00000017731	smarca5	95	81.727	ENSLAFG00000000896	SMARCA1	98	82.287	Loxodonta_africana
ENSGAFG00000017731	smarca5	95	82.828	ENSMFAG00000002117	SMARCA1	94	84.550	Macaca_fascicularis
ENSGAFG00000017731	smarca5	93	83.851	ENSMMUG00000008818	SMARCA1	97	84.665	Macaca_mulatta
ENSGAFG00000017731	smarca5	93	83.851	ENSMNEG00000041768	SMARCA1	94	84.550	Macaca_nemestrina
ENSGAFG00000017731	smarca5	95	82.828	ENSMLEG00000043198	SMARCA1	93	83.503	Mandrillus_leucophaeus
ENSGAFG00000017731	smarca5	100	96.920	ENSMAMG00000014294	smarca5	100	96.920	Mastacembelus_armatus
ENSGAFG00000017731	smarca5	100	97.394	ENSMZEG00005009369	smarca5	100	97.394	Maylandia_zebra
ENSGAFG00000017731	smarca5	95	83.099	ENSMGAG00000007042	SMARCA1	98	83.099	Meleagris_gallopavo
ENSGAFG00000017731	smarca5	93	82.183	ENSMAUG00000008133	Smarca1	91	82.304	Mesocricetus_auratus
ENSGAFG00000017731	smarca5	95	83.232	ENSMICG00000015768	SMARCA1	93	83.809	Microcebus_murinus
ENSGAFG00000017731	smarca5	95	81.106	ENSMOCG00000009464	Smarca1	93	81.662	Microtus_ochrogaster
ENSGAFG00000017731	smarca5	96	96.073	ENSMMOG00000005547	smarca5	100	96.073	Mola_mola
ENSGAFG00000017731	smarca5	99	80.892	ENSMODG00000013187	-	94	84.098	Monodelphis_domestica
ENSGAFG00000017731	smarca5	100	96.721	ENSMALG00000002081	smarca5	100	96.721	Monopterus_albus
ENSGAFG00000017731	smarca5	95	81.407	MGP_CAROLIEiJ_G0033034	Smarca1	93	81.966	Mus_caroli
ENSGAFG00000017731	smarca5	95	81.508	ENSMUSG00000031099	Smarca1	93	82.067	Mus_musculus
ENSGAFG00000017731	smarca5	95	81.680	MGP_PahariEiJ_G0031579	Smarca1	92	82.347	Mus_pahari
ENSGAFG00000017731	smarca5	95	81.508	MGP_SPRETEiJ_G0034192	Smarca1	93	82.067	Mus_spretus
ENSGAFG00000017731	smarca5	95	82.036	ENSMPUG00000017423	SMARCA1	88	82.596	Mustela_putorius_furo
ENSGAFG00000017731	smarca5	95	80.777	ENSMLUG00000029614	SMARCA1	93	81.024	Myotis_lucifugus
ENSGAFG00000017731	smarca5	93	82.698	ENSNGAG00000006492	Smarca1	91	82.827	Nannospalax_galili
ENSGAFG00000017731	smarca5	96	97.990	ENSNBRG00000004463	smarca5	100	97.990	Neolamprologus_brichardi
ENSGAFG00000017731	smarca5	95	81.138	ENSNLEG00000015179	SMARCA1	94	83.827	Nomascus_leucogenys
ENSGAFG00000017731	smarca5	89	76.364	ENSMEUG00000008819	SMARCA1	98	76.364	Notamacropus_eugenii
ENSGAFG00000017731	smarca5	97	79.704	ENSODEG00000012163	SMARCA1	91	82.827	Octodon_degus
ENSGAFG00000017731	smarca5	100	97.490	ENSONIG00000009993	smarca5	100	97.490	Oreochromis_niloticus
ENSGAFG00000017731	smarca5	94	84.979	ENSOANG00000002862	SMARCA1	99	84.979	Ornithorhynchus_anatinus
ENSGAFG00000017731	smarca5	95	83.181	ENSOCUG00000001047	SMARCA1	93	83.503	Oryctolagus_cuniculus
ENSGAFG00000017731	smarca5	100	96.535	ENSORLG00000021998	smarca5	100	96.535	Oryzias_latipes
ENSGAFG00000017731	smarca5	100	96.532	ENSORLG00020017679	smarca5	100	96.532	Oryzias_latipes_hni
ENSGAFG00000017731	smarca5	100	96.721	ENSORLG00015017210	smarca5	100	96.721	Oryzias_latipes_hsok
ENSGAFG00000017731	smarca5	100	96.815	ENSOMEG00000000086	smarca5	100	96.815	Oryzias_melastigma
ENSGAFG00000017731	smarca5	93	83.470	ENSOGAG00000004399	SMARCA1	91	83.874	Otolemur_garnettii
ENSGAFG00000017731	smarca5	94	83.333	ENSOARG00000014638	SMARCA1	99	83.333	Ovis_aries
ENSGAFG00000017731	smarca5	95	82.828	ENSPPAG00000034647	SMARCA1	93	83.503	Pan_paniscus
ENSGAFG00000017731	smarca5	95	83.030	ENSPPRG00000008929	SMARCA1	93	83.605	Panthera_pardus
ENSGAFG00000017731	smarca5	95	81.132	ENSPTIG00000000915	SMARCA1	96	81.682	Panthera_tigris_altaica
ENSGAFG00000017731	smarca5	95	82.828	ENSPTRG00000049876	SMARCA1	93	82.495	Pan_troglodytes
ENSGAFG00000017731	smarca5	95	82.828	ENSPANG00000003871	SMARCA1	93	83.503	Papio_anubis
ENSGAFG00000017731	smarca5	95	82.197	ENSPKIG00000013411	smarca1	99	82.197	Paramormyrops_kingsleyae
ENSGAFG00000017731	smarca5	94	84.568	ENSPSIG00000010101	SMARCA1	99	84.568	Pelodiscus_sinensis
ENSGAFG00000017731	smarca5	93	82.492	ENSPEMG00000017503	Smarca1	91	82.618	Peromyscus_maniculatus_bairdii
ENSGAFG00000017731	smarca5	95	84.521	ENSPCIG00000015460	SMARCA1	96	84.521	Phascolarctos_cinereus
ENSGAFG00000017731	smarca5	100	99.710	ENSPFOG00000007649	smarca5	100	99.710	Poecilia_formosa
ENSGAFG00000017731	smarca5	100	99.710	ENSPLAG00000003363	smarca5	100	99.710	Poecilia_latipinna
ENSGAFG00000017731	smarca5	100	99.807	ENSPMEG00000019849	smarca5	100	99.807	Poecilia_mexicana
ENSGAFG00000017731	smarca5	100	99.710	ENSPREG00000023250	smarca5	100	99.710	Poecilia_reticulata
ENSGAFG00000017731	smarca5	95	80.000	ENSPPYG00000020703	SMARCA1	93	80.652	Pongo_abelii
ENSGAFG00000017731	smarca5	75	76.502	ENSPCOG00000020722	SMARCA1	93	80.119	Propithecus_coquereli
ENSGAFG00000017731	smarca5	87	83.355	ENSPVAG00000003805	SMARCA1	85	83.443	Pteropus_vampyrus
ENSGAFG00000017731	smarca5	58	98.947	ENSPNYG00000012299	smarca5	93	98.947	Pundamilia_nyererei
ENSGAFG00000017731	smarca5	95	81.616	ENSRNOG00000003762	Smarca1	93	82.179	Rattus_norvegicus
ENSGAFG00000017731	smarca5	95	82.929	ENSRROG00000034167	SMARCA1	93	83.605	Rhinopithecus_roxellana
ENSGAFG00000017731	smarca5	94	83.538	ENSSBOG00000020641	SMARCA1	99	83.538	Saimiri_boliviensis_boliviensis
ENSGAFG00000017731	smarca5	94	79.733	ENSSHAG00000013518	SMARCA1	99	79.733	Sarcophilus_harrisii
ENSGAFG00000017731	smarca5	95	84.756	ENSSFOG00015009043	smarca1	96	84.929	Scleropages_formosus
ENSGAFG00000017731	smarca5	97	91.218	ENSSFOG00015016794	smarca5	100	93.093	Scleropages_formosus
ENSGAFG00000017731	smarca5	100	95.950	ENSSMAG00000004801	smarca5	100	95.950	Scophthalmus_maximus
ENSGAFG00000017731	smarca5	100	96.908	ENSSDUG00000020690	smarca5	100	96.908	Seriola_dumerili
ENSGAFG00000017731	smarca5	100	96.908	ENSSLDG00000025190	smarca5	100	96.908	Seriola_lalandi_dorsalis
ENSGAFG00000017731	smarca5	78	84.698	ENSSARG00000000842	SMARCA1	81	84.698	Sorex_araneus
ENSGAFG00000017731	smarca5	96	82.814	ENSSPUG00000000590	SMARCA1	96	82.748	Sphenodon_punctatus
ENSGAFG00000017731	smarca5	100	97.201	ENSSPAG00000002894	smarca5	100	97.201	Stegastes_partitus
ENSGAFG00000017731	smarca5	93	83.747	ENSSSCG00000012649	SMARCA1	97	81.936	Sus_scrofa
ENSGAFG00000017731	smarca5	95	83.809	ENSTGUG00000003899	-	99	83.809	Taeniopygia_guttata
ENSGAFG00000017731	smarca5	100	95.652	ENSTRUG00000014094	smarca5	100	95.652	Takifugu_rubripes
ENSGAFG00000017731	smarca5	98	94.882	ENSTNIG00000017717	smarca5	97	95.248	Tetraodon_nigroviridis
ENSGAFG00000017731	smarca5	86	82.373	ENSTBEG00000014973	SMARCA1	89	82.525	Tupaia_belangeri
ENSGAFG00000017731	smarca5	93	79.571	ENSTTRG00000006168	SMARCA1	96	80.336	Tursiops_truncatus
ENSGAFG00000017731	smarca5	95	82.828	ENSUAMG00000020201	SMARCA1	93	83.401	Ursus_americanus
ENSGAFG00000017731	smarca5	97	77.668	ENSUMAG00000004073	SMARCA1	96	85.086	Ursus_maritimus
ENSGAFG00000017731	smarca5	73	86.842	ENSVPAG00000010492	-	77	87.543	Vicugna_pacos
ENSGAFG00000017731	smarca5	95	83.030	ENSVVUG00000008878	SMARCA1	98	84.984	Vulpes_vulpes
ENSGAFG00000017731	smarca5	95	84.028	ENSXETG00000001526	smarca1	98	84.356	Xenopus_tropicalis
ENSGAFG00000017731	smarca5	97	99.802	ENSXCOG00000011170	smarca5	100	99.802	Xiphophorus_couchianus
ENSGAFG00000017731	smarca5	100	99.710	ENSXMAG00000009678	smarca5	100	99.710	Xiphophorus_maculatus