EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000018093 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 20066 bases
Position: chrNHOQ01002897.1:1014388-1034453
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000026777	ResIII	PF04851.15	3e-13	1	1
ENSGAFP00000026786	ResIII	PF04851.15	3.4e-10	1	1
ENSGAFP00000026777	DEAD	PF00270.29	7.5e-27	1	1
ENSGAFP00000026786	DEAD	PF00270.29	2.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000027051	-	3036	-	ENSGAFP00000026777	1011 (aa)	-	-
ENSGAFT00000027060	-	2577	-	ENSGAFP00000026786	859 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000018093's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000018093's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000018093	hfm1	77	30.917	ENSGAFG00000010807	snrnp200	65	30.917

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000018093	hfm1	93	67.150	ENSG00000162669	HFM1	71	62.002	Homo_sapiens
ENSGAFG00000018093	hfm1	100	82.755	ENSAPOG00000005304	hfm1	96	86.490	Acanthochromis_polyacanthus
ENSGAFG00000018093	hfm1	92	67.801	ENSAMEG00000000432	HFM1	71	61.748	Ailuropoda_melanoleuca
ENSGAFG00000018093	hfm1	99	77.202	ENSACIG00000021553	hfm1	94	77.202	Amphilophus_citrinellus
ENSGAFG00000018093	hfm1	100	84.204	ENSAOCG00000022839	hfm1	99	84.204	Amphiprion_ocellaris
ENSGAFG00000018093	hfm1	100	83.875	ENSAPEG00000014316	hfm1	99	83.875	Amphiprion_percula
ENSGAFG00000018093	hfm1	99	78.936	ENSATEG00000019181	hfm1	90	78.330	Anabas_testudineus
ENSGAFG00000018093	hfm1	92	66.465	ENSAPLG00000013639	HFM1	71	60.815	Anas_platyrhynchos
ENSGAFG00000018093	hfm1	92	66.221	ENSANAG00000029513	HFM1	70	62.216	Aotus_nancymaae
ENSGAFG00000018093	hfm1	100	78.331	ENSACLG00000009033	hfm1	99	78.331	Astatotilapia_calliptera
ENSGAFG00000018093	hfm1	100	71.065	ENSAMXG00000006108	hfm1	66	70.825	Astyanax_mexicanus
ENSGAFG00000018093	hfm1	92	67.315	ENSBTAG00000020856	HFM1	70	61.942	Bos_taurus
ENSGAFG00000018093	hfm1	92	66.829	ENSCJAG00000001843	HFM1	71	61.808	Callithrix_jacchus
ENSGAFG00000018093	hfm1	92	67.397	ENSCAFG00000020187	HFM1	71	61.375	Canis_familiaris
ENSGAFG00000018093	hfm1	93	66.747	ENSTSYG00000014250	HFM1	71	61.272	Carlito_syrichta
ENSGAFG00000018093	hfm1	94	65.591	ENSCPOG00000007421	HFM1	73	60.135	Cavia_porcellus
ENSGAFG00000018093	hfm1	92	66.464	ENSCCAG00000033206	HFM1	71	61.224	Cebus_capucinus
ENSGAFG00000018093	hfm1	92	66.829	ENSCATG00000030987	HFM1	71	61.419	Cercocebus_atys
ENSGAFG00000018093	hfm1	94	66.382	ENSCLAG00000005173	HFM1	72	58.279	Chinchilla_lanigera
ENSGAFG00000018093	hfm1	78	50.210	ENSCSAVG00000005094	-	100	51.671	Ciona_savignyi
ENSGAFG00000018093	hfm1	94	57.968	ENSCGRG00001016995	Hfm1	70	58.052	Cricetulus_griseus_chok1gshd
ENSGAFG00000018093	hfm1	95	64.345	ENSCGRG00000017181	Hfm1	71	59.981	Cricetulus_griseus_crigri
ENSGAFG00000018093	hfm1	99	70.349	ENSCSEG00000017659	hfm1	95	70.161	Cynoglossus_semilaevis
ENSGAFG00000018093	hfm1	80	86.376	ENSCVAG00000005075	hfm1	86	89.733	Cyprinodon_variegatus
ENSGAFG00000018093	hfm1	100	71.921	ENSDARG00000104288	hfm1	82	71.921	Danio_rerio
ENSGAFG00000018093	hfm1	94	65.394	ENSDNOG00000004776	HFM1	62	64.725	Dasypus_novemcinctus
ENSGAFG00000018093	hfm1	93	64.118	ENSDORG00000014661	Hfm1	71	59.052	Dipodomys_ordii
ENSGAFG00000018093	hfm1	50	61.276	ENSEBUG00000006133	-	91	61.276	Eptatretus_burgeri
ENSGAFG00000018093	hfm1	95	62.907	ENSEASG00005015424	HFM1	96	62.907	Equus_asinus_asinus
ENSGAFG00000018093	hfm1	93	66.667	ENSECAG00000024039	HFM1	72	60.150	Equus_caballus
ENSGAFG00000018093	hfm1	100	75.406	ENSELUG00000018944	hfm1	97	75.406	Esox_lucius
ENSGAFG00000018093	hfm1	92	67.558	ENSFCAG00000029116	HFM1	71	61.932	Felis_catus
ENSGAFG00000018093	hfm1	95	65.012	ENSFALG00000001781	HFM1	71	60.676	Ficedula_albicollis
ENSGAFG00000018093	hfm1	94	65.472	ENSFDAG00000020816	HFM1	71	59.322	Fukomys_damarensis
ENSGAFG00000018093	hfm1	91	71.798	ENSGMOG00000017436	hfm1	97	68.770	Gadus_morhua
ENSGAFG00000018093	hfm1	91	75.739	ENSGACG00000015686	hfm1	98	72.468	Gasterosteus_aculeatus
ENSGAFG00000018093	hfm1	93	67.150	ENSGGOG00000038524	HFM1	71	61.905	Gorilla_gorilla
ENSGAFG00000018093	hfm1	99	75.681	ENSHBUG00000007309	hfm1	97	75.681	Haplochromis_burtoni
ENSGAFG00000018093	hfm1	100	75.203	ENSHCOG00000019632	hfm1	100	75.550	Hippocampus_comes
ENSGAFG00000018093	hfm1	99	73.310	ENSIPUG00000017020	hfm1	97	73.310	Ictalurus_punctatus
ENSGAFG00000018093	hfm1	96	63.967	ENSJJAG00000017198	Hfm1	67	63.636	Jaculus_jaculus
ENSGAFG00000018093	hfm1	91	82.987	ENSKMAG00000002282	hfm1	91	81.561	Kryptolebias_marmoratus
ENSGAFG00000018093	hfm1	100	78.356	ENSLBEG00000006759	hfm1	98	78.356	Labrus_bergylta
ENSGAFG00000018093	hfm1	91	67.439	ENSLACG00000010698	HFM1	100	60.432	Latimeria_chalumnae
ENSGAFG00000018093	hfm1	93	71.342	ENSLOCG00000004931	hfm1	94	65.373	Lepisosteus_oculatus
ENSGAFG00000018093	hfm1	76	67.747	ENSLAFG00000015903	-	90	71.174	Loxodonta_africana
ENSGAFG00000018093	hfm1	95	63.251	ENSMFAG00000003649	HFM1	71	58.647	Macaca_fascicularis
ENSGAFG00000018093	hfm1	95	65.570	ENSMMUG00000006819	HFM1	71	61.516	Macaca_mulatta
ENSGAFG00000018093	hfm1	100	78.563	ENSMAMG00000004623	hfm1	99	78.911	Mastacembelus_armatus
ENSGAFG00000018093	hfm1	100	78.331	ENSMZEG00005004679	hfm1	99	78.331	Maylandia_zebra
ENSGAFG00000018093	hfm1	83	65.688	ENSMGAG00000008437	HFM1	94	68.063	Meleagris_gallopavo
ENSGAFG00000018093	hfm1	94	64.277	ENSMAUG00000018858	Hfm1	71	59.441	Mesocricetus_auratus
ENSGAFG00000018093	hfm1	94	66.031	ENSMICG00000037935	HFM1	71	60.752	Microcebus_murinus
ENSGAFG00000018093	hfm1	94	64.636	ENSMOCG00000014812	Hfm1	71	59.634	Microtus_ochrogaster
ENSGAFG00000018093	hfm1	100	81.882	ENSMMOG00000006148	hfm1	98	81.882	Mola_mola
ENSGAFG00000018093	hfm1	100	81.112	ENSMALG00000002401	hfm1	99	81.112	Monopterus_albus
ENSGAFG00000018093	hfm1	89	72.500	MGP_CAROLIEiJ_G0027496	Hfm1	70	72.500	Mus_caroli
ENSGAFG00000018093	hfm1	93	64.826	ENSMUSG00000043410	Hfm1	71	59.787	Mus_musculus
ENSGAFG00000018093	hfm1	94	64.755	MGP_PahariEiJ_G0017268	Hfm1	73	58.640	Mus_pahari
ENSGAFG00000018093	hfm1	93	65.186	MGP_SPRETEiJ_G0028495	Hfm1	71	60.271	Mus_spretus
ENSGAFG00000018093	hfm1	93	66.307	ENSMPUG00000004594	HFM1	72	59.349	Mustela_putorius_furo
ENSGAFG00000018093	hfm1	92	67.801	ENSMLUG00000010200	HFM1	71	61.010	Myotis_lucifugus
ENSGAFG00000018093	hfm1	100	77.146	ENSNBRG00000002910	hfm1	99	77.262	Neolamprologus_brichardi
ENSGAFG00000018093	hfm1	93	65.301	ENSNLEG00000010285	HFM1	71	59.126	Nomascus_leucogenys
ENSGAFG00000018093	hfm1	89	60.438	ENSMEUG00000015788	HFM1	65	60.438	Notamacropus_eugenii
ENSGAFG00000018093	hfm1	93	60.990	ENSOPRG00000013916	HFM1	57	62.424	Ochotona_princeps
ENSGAFG00000018093	hfm1	93	81.763	ENSONIG00000010590	hfm1	98	74.125	Oreochromis_niloticus
ENSGAFG00000018093	hfm1	91	82.719	ENSORLG00000026844	hfm1	100	82.719	Oryzias_latipes
ENSGAFG00000018093	hfm1	100	71.084	ENSORLG00020002951	hfm1	75	68.072	Oryzias_latipes_hni
ENSGAFG00000018093	hfm1	100	79.663	ENSOMEG00000016474	hfm1	74	69.944	Oryzias_melastigma
ENSGAFG00000018093	hfm1	92	67.233	ENSOGAG00000032369	HFM1	76	65.166	Otolemur_garnettii
ENSGAFG00000018093	hfm1	94	66.468	ENSOARG00000015812	HFM1	71	62.293	Ovis_aries
ENSGAFG00000018093	hfm1	93	67.391	ENSPPAG00000024582	HFM1	77	62.196	Pan_paniscus
ENSGAFG00000018093	hfm1	92	67.558	ENSPPRG00000003270	HFM1	71	62.173	Panthera_pardus
ENSGAFG00000018093	hfm1	92	67.558	ENSPTIG00000018881	HFM1	71	62.173	Panthera_tigris_altaica
ENSGAFG00000018093	hfm1	93	67.391	ENSPTRG00000000948	HFM1	71	62.209	Pan_troglodytes
ENSGAFG00000018093	hfm1	92	66.707	ENSPANG00000009838	HFM1	71	61.224	Papio_anubis
ENSGAFG00000018093	hfm1	99	71.312	ENSPKIG00000003810	hfm1	99	71.312	Paramormyrops_kingsleyae
ENSGAFG00000018093	hfm1	91	78.145	ENSPMGG00000011059	hfm1	98	78.145	Periophthalmus_magnuspinnatus
ENSGAFG00000018093	hfm1	94	64.277	ENSPEMG00000022852	Hfm1	71	59.556	Peromyscus_maniculatus_bairdii
ENSGAFG00000018093	hfm1	92	67.152	ENSPCIG00000014233	HFM1	72	59.176	Phascolarctos_cinereus
ENSGAFG00000018093	hfm1	91	93.727	ENSPFOG00000017194	hfm1	100	86.381	Poecilia_formosa
ENSGAFG00000018093	hfm1	99	91.437	ENSPLAG00000000571	hfm1	95	91.437	Poecilia_latipinna
ENSGAFG00000018093	hfm1	99	91.246	ENSPMEG00000019475	hfm1	95	91.246	Poecilia_mexicana
ENSGAFG00000018093	hfm1	100	96.516	ENSPREG00000007803	hfm1	100	96.516	Poecilia_reticulata
ENSGAFG00000018093	hfm1	93	67.231	ENSPPYG00000001163	HFM1	71	62.112	Pongo_abelii
ENSGAFG00000018093	hfm1	93	61.151	ENSPVAG00000009713	HFM1	67	58.421	Pteropus_vampyrus
ENSGAFG00000018093	hfm1	100	78.009	ENSPNYG00000001795	hfm1	99	78.009	Pundamilia_nyererei
ENSGAFG00000018093	hfm1	100	74.697	ENSPNAG00000010865	hfm1	92	74.697	Pygocentrus_nattereri
ENSGAFG00000018093	hfm1	93	64.826	ENSRNOG00000023299	Hfm1	71	58.892	Rattus_norvegicus
ENSGAFG00000018093	hfm1	99	66.950	ENSRROG00000045569	HFM1	71	61.322	Rhinopithecus_roxellana
ENSGAFG00000018093	hfm1	92	66.707	ENSSBOG00000027456	HFM1	66	65.129	Saimiri_boliviensis_boliviensis
ENSGAFG00000018093	hfm1	67	67.657	ENSSHAG00000014616	-	67	71.622	Sarcophilus_harrisii
ENSGAFG00000018093	hfm1	100	72.662	ENSSFOG00015020129	hfm1	61	72.662	Scleropages_formosus
ENSGAFG00000018093	hfm1	92	80.242	ENSSMAG00000006907	hfm1	86	80.363	Scophthalmus_maximus
ENSGAFG00000018093	hfm1	100	82.715	ENSSDUG00000011424	hfm1	99	82.715	Seriola_dumerili
ENSGAFG00000018093	hfm1	100	82.986	ENSSLDG00000016386	hfm1	99	82.986	Seriola_lalandi_dorsalis
ENSGAFG00000018093	hfm1	100	83.875	ENSSPAG00000001023	hfm1	99	83.875	Stegastes_partitus
ENSGAFG00000018093	hfm1	94	66.587	ENSSSCG00000006912	HFM1	78	60.487	Sus_scrofa
ENSGAFG00000018093	hfm1	91	65.890	ENSTGUG00000006172	HFM1	97	64.017	Taeniopygia_guttata
ENSGAFG00000018093	hfm1	53	79.526	ENSTNIG00000006962	hfm1	97	79.449	Tetraodon_nigroviridis
ENSGAFG00000018093	hfm1	93	66.067	ENSTTRG00000013933	HFM1	72	60.773	Tursiops_truncatus
ENSGAFG00000018093	hfm1	92	65.006	ENSVPAG00000011331	HFM1	71	59.480	Vicugna_pacos
ENSGAFG00000018093	hfm1	95	62.651	ENSVVUG00000020760	HFM1	99	62.651	Vulpes_vulpes
ENSGAFG00000018093	hfm1	100	96.785	ENSXMAG00000004178	hfm1	100	96.785	Xiphophorus_maculatus