EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000018340 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 5793 bases
Position: chrNHOQ01002139.1:324457-330249
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000027137	zf-C2H2	PF00096.26	6.3e-46	1	9
ENSGAFP00000027137	zf-C2H2	PF00096.26	6.3e-46	2	9
ENSGAFP00000027137	zf-C2H2	PF00096.26	6.3e-46	3	9
ENSGAFP00000027137	zf-C2H2	PF00096.26	6.3e-46	4	9
ENSGAFP00000027137	zf-C2H2	PF00096.26	6.3e-46	5	9
ENSGAFP00000027137	zf-C2H2	PF00096.26	6.3e-46	6	9
ENSGAFP00000027137	zf-C2H2	PF00096.26	6.3e-46	7	9
ENSGAFP00000027137	zf-C2H2	PF00096.26	6.3e-46	8	9
ENSGAFP00000027137	zf-C2H2	PF00096.26	6.3e-46	9	9
ENSGAFP00000027137	zf-met	PF12874.7	4.2e-15	1	4
ENSGAFP00000027137	zf-met	PF12874.7	4.2e-15	2	4
ENSGAFP00000027137	zf-met	PF12874.7	4.2e-15	3	4
ENSGAFP00000027137	zf-met	PF12874.7	4.2e-15	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000027418	-	4059	-	ENSGAFP00000027137	781 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000018340's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000018340's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000018340	-	58	38.971	ENSGAFG00000011998	-	74	39.091
ENSGAFG00000018340	-	58	39.175	ENSGAFG00000013390	-	66	39.175
ENSGAFG00000018340	-	72	38.942	ENSGAFG00000016322	-	91	40.244
ENSGAFG00000018340	-	70	38.197	ENSGAFG00000016139	-	74	38.462
ENSGAFG00000018340	-	51	41.606	ENSGAFG00000001879	-	64	41.606
ENSGAFG00000018340	-	50	38.079	ENSGAFG00000014097	-	69	38.182
ENSGAFG00000018340	-	55	38.996	ENSGAFG00000014188	-	99	39.175
ENSGAFG00000018340	-	55	39.130	ENSGAFG00000012934	-	75	39.130
ENSGAFG00000018340	-	53	37.452	ENSGAFG00000018557	-	52	37.452
ENSGAFG00000018340	-	56	39.474	ENSGAFG00000013677	-	84	42.784
ENSGAFG00000018340	-	61	39.877	ENSGAFG00000013420	-	69	39.073
ENSGAFG00000018340	-	50	41.237	ENSGAFG00000012035	-	84	44.068
ENSGAFG00000018340	-	55	45.918	ENSGAFG00000013934	-	100	41.837
ENSGAFG00000018340	-	65	37.629	ENSGAFG00000013053	-	50	37.629

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000018340	-	58	32.088	ENSAPOG00000024332	-	74	41.053	Acanthochromis_polyacanthus
ENSGAFG00000018340	-	55	41.806	ENSACIG00000004666	-	99	45.946	Amphilophus_citrinellus
ENSGAFG00000018340	-	54	38.053	ENSACIG00000018952	-	61	39.450	Amphilophus_citrinellus
ENSGAFG00000018340	-	54	46.552	ENSACIG00000022625	-	86	45.600	Amphilophus_citrinellus
ENSGAFG00000018340	-	51	37.017	ENSAPEG00000009533	-	71	40.523	Amphiprion_percula
ENSGAFG00000018340	-	55	39.487	ENSAPEG00000003892	-	72	39.487	Amphiprion_percula
ENSGAFG00000018340	-	61	37.824	ENSAMXG00000035286	si:ch1073-224n8.1	94	37.824	Astyanax_mexicanus
ENSGAFG00000018340	-	99	71.483	ENSCSEG00000009915	-	99	72.006	Cynoglossus_semilaevis
ENSGAFG00000018340	-	52	35.749	ENSCSEG00000004210	-	98	40.132	Cynoglossus_semilaevis
ENSGAFG00000018340	-	96	38.335	ENSDARG00000095332	si:dkey-14d8.1	99	35.155	Danio_rerio
ENSGAFG00000018340	-	64	39.720	ENSEBUG00000000967	-	75	43.210	Eptatretus_burgeri
ENSGAFG00000018340	-	56	32.055	ENSEBUG00000012053	-	81	35.764	Eptatretus_burgeri
ENSGAFG00000018340	-	52	44.172	ENSEBUG00000013400	-	61	44.172	Eptatretus_burgeri
ENSGAFG00000018340	-	56	44.444	ENSFHEG00000017241	-	58	41.714	Fundulus_heteroclitus
ENSGAFG00000018340	-	85	87.349	ENSFHEG00000018423	-	100	87.500	Fundulus_heteroclitus
ENSGAFG00000018340	-	95	35.651	ENSIPUG00000005775	si:dkey-14d8.1	99	36.100	Ictalurus_punctatus
ENSGAFG00000018340	-	62	38.860	ENSKMAG00000000387	-	53	38.860	Kryptolebias_marmoratus
ENSGAFG00000018340	-	56	41.433	ENSKMAG00000021716	-	81	41.433	Kryptolebias_marmoratus
ENSGAFG00000018340	-	54	40.517	ENSLBEG00000014263	-	87	40.517	Labrus_bergylta
ENSGAFG00000018340	-	99	74.905	ENSLBEG00000001920	-	99	75.445	Labrus_bergylta
ENSGAFG00000018340	-	99	78.205	ENSMAMG00000009555	-	99	79.359	Mastacembelus_armatus
ENSGAFG00000018340	-	57	39.698	ENSNBRG00000007384	-	51	39.698	Neolamprologus_brichardi
ENSGAFG00000018340	-	99	77.215	ENSORLG00015017255	-	91	86.429	Oryzias_latipes_hsok
ENSGAFG00000018340	-	98	63.063	ENSPMGG00000023739	-	88	78.079	Periophthalmus_magnuspinnatus
ENSGAFG00000018340	-	100	96.675	ENSPFOG00000016324	-	100	96.675	Poecilia_formosa
ENSGAFG00000018340	-	56	43.011	ENSPLAG00000006838	-	74	43.011	Poecilia_latipinna
ENSGAFG00000018340	-	100	96.675	ENSPLAG00000001279	-	100	96.675	Poecilia_latipinna
ENSGAFG00000018340	-	100	96.931	ENSPMEG00000016548	-	100	96.931	Poecilia_mexicana
ENSGAFG00000018340	-	55	41.916	ENSPREG00000015421	-	66	41.916	Poecilia_reticulata
ENSGAFG00000018340	-	54	40.876	ENSPNYG00000002862	-	51	40.876	Pundamilia_nyererei
ENSGAFG00000018340	-	59	37.374	ENSPNYG00000011987	-	94	37.629	Pundamilia_nyererei
ENSGAFG00000018340	-	99	76.612	ENSSMAG00000000183	-	99	77.370	Scophthalmus_maximus
ENSGAFG00000018340	-	99	77.778	ENSSDUG00000006133	-	99	78.535	Seriola_dumerili
ENSGAFG00000018340	-	99	77.146	ENSSLDG00000010460	-	99	77.904	Seriola_lalandi_dorsalis
ENSGAFG00000018340	-	99	76.329	ENSSPAG00000013319	-	99	77.215	Stegastes_partitus
ENSGAFG00000018340	-	54	39.560	ENSTRUG00000020582	-	86	40.230	Takifugu_rubripes
ENSGAFG00000018340	-	51	41.667	ENSXCOG00000007979	-	71	41.667	Xiphophorus_couchianus
ENSGAFG00000018340	-	100	96.803	ENSXMAG00000024928	-	100	96.803	Xiphophorus_maculatus