EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000018408 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 7991 bases
Position: chrNHOQ01002897.1:1276236-1284226
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000027234	RRM_1	PF00076.22	1.6e-42	1	4
ENSGAFP00000027234	RRM_1	PF00076.22	1.6e-42	2	4
ENSGAFP00000027234	RRM_1	PF00076.22	1.6e-42	3	4
ENSGAFP00000027234	RRM_1	PF00076.22	1.6e-42	4	4
ENSGAFP00000027237	RRM_1	PF00076.22	1.8e-42	1	4
ENSGAFP00000027237	RRM_1	PF00076.22	1.8e-42	2	4
ENSGAFP00000027237	RRM_1	PF00076.22	1.8e-42	3	4
ENSGAFP00000027237	RRM_1	PF00076.22	1.8e-42	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000027520	-	2365	-	ENSGAFP00000027237	498 (aa)	-	-
ENSGAFT00000027517	-	1999	-	ENSGAFP00000027234	488 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000018408's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000018408's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000018408	-	79	41.902	ENSGAFG00000015375	ncl	67	38.380

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000018408	-	80	46.996	ENSACIG00000021941	-	93	46.290	Amphilophus_citrinellus
ENSGAFG00000018408	-	83	43.765	ENSACLG00000009613	-	95	43.765	Astatotilapia_calliptera
ENSGAFG00000018408	-	82	47.458	ENSCSEG00000017388	-	76	47.666	Cynoglossus_semilaevis
ENSGAFG00000018408	-	100	64.549	ENSFHEG00000017265	-	96	64.549	Fundulus_heteroclitus
ENSGAFG00000018408	-	79	39.231	ENSGMOG00000017831	-	97	39.031	Gadus_morhua
ENSGAFG00000018408	-	83	43.457	ENSHBUG00000006683	-	96	43.457	Haplochromis_burtoni
ENSGAFG00000018408	-	85	46.556	ENSHCOG00000020361	-	98	46.099	Hippocampus_comes
ENSGAFG00000018408	-	89	58.257	ENSKMAG00000003154	-	93	58.257	Kryptolebias_marmoratus
ENSGAFG00000018408	-	83	43.457	ENSMZEG00005005300	-	96	43.457	Maylandia_zebra
ENSGAFG00000018408	-	81	48.861	ENSMMOG00000018095	-	89	48.861	Mola_mola
ENSGAFG00000018408	-	93	50.000	ENSMALG00000006207	-	89	47.244	Monopterus_albus
ENSGAFG00000018408	-	79	46.494	ENSPMGG00000013705	-	90	46.753	Periophthalmus_magnuspinnatus
ENSGAFG00000018408	-	100	89.091	ENSPFOG00000016767	-	100	89.091	Poecilia_formosa
ENSGAFG00000018408	-	100	89.495	ENSPLAG00000000597	-	100	89.495	Poecilia_latipinna
ENSGAFG00000018408	-	100	90.816	ENSPMEG00000004046	-	100	90.816	Poecilia_mexicana
ENSGAFG00000018408	-	95	89.507	ENSPREG00000007170	-	95	88.272	Poecilia_reticulata
ENSGAFG00000018408	-	81	44.691	ENSPNYG00000000391	-	96	44.691	Pundamilia_nyererei
ENSGAFG00000018408	-	98	45.228	ENSTRUG00000023880	-	94	44.813	Takifugu_rubripes
ENSGAFG00000018408	-	100	92.418	ENSXMAG00000004403	-	100	92.418	Xiphophorus_maculatus