EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000018890 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 13824 bases
Position: chrNHOQ01002708.1:6308108-6321931
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000027940	CPSF_A	PF03178.15	6.5e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000028227	-	4050	-	ENSGAFP00000027940	1349 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000018890's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000018890's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000018890	cpsf1	100	85.714	ENSG00000071894	CPSF1	95	85.714	Homo_sapiens
ENSGAFG00000018890	cpsf1	100	91.071	ENSAPOG00000019621	cpsf1	96	91.071	Acanthochromis_polyacanthus
ENSGAFG00000018890	cpsf1	96	83.929	ENSAMEG00000005557	CPSF1	95	83.929	Ailuropoda_melanoleuca
ENSGAFG00000018890	cpsf1	100	87.500	ENSACIG00000006112	cpsf1	95	87.500	Amphilophus_citrinellus
ENSGAFG00000018890	cpsf1	100	91.071	ENSAOCG00000007120	cpsf1	95	91.071	Amphiprion_ocellaris
ENSGAFG00000018890	cpsf1	100	91.071	ENSAPEG00000005755	cpsf1	96	91.071	Amphiprion_percula
ENSGAFG00000018890	cpsf1	100	85.484	ENSATEG00000011097	cpsf1	96	85.484	Anabas_testudineus
ENSGAFG00000018890	cpsf1	97	72.734	ENSACAG00000009655	CPSF1	99	72.584	Anolis_carolinensis
ENSGAFG00000018890	cpsf1	100	85.714	ENSANAG00000036514	CPSF1	95	85.714	Aotus_nancymaae
ENSGAFG00000018890	cpsf1	100	87.500	ENSACLG00000012231	cpsf1	95	87.500	Astatotilapia_calliptera
ENSGAFG00000018890	cpsf1	100	78.571	ENSAMXG00000008485	cpsf1	95	78.571	Astyanax_mexicanus
ENSGAFG00000018890	cpsf1	100	74.906	ENSBTAG00000008355	CPSF1	95	75.920	Bos_taurus
ENSGAFG00000018890	cpsf1	96	32.192	WBGene00022301	cpsf-1	90	31.997	Caenorhabditis_elegans
ENSGAFG00000018890	cpsf1	100	85.714	ENSCJAG00000021421	CPSF1	95	85.714	Callithrix_jacchus
ENSGAFG00000018890	cpsf1	96	83.929	ENSCAFG00000001600	CPSF1	94	83.929	Canis_familiaris
ENSGAFG00000018890	cpsf1	100	83.929	ENSCAFG00020020821	CPSF1	95	83.929	Canis_lupus_dingo
ENSGAFG00000018890	cpsf1	100	72.702	ENSCHIG00000015833	CPSF1	100	72.277	Capra_hircus
ENSGAFG00000018890	cpsf1	100	85.714	ENSTSYG00000028560	CPSF1	95	85.714	Carlito_syrichta
ENSGAFG00000018890	cpsf1	96	83.929	ENSCAPG00000014921	CPSF1	94	83.929	Cavia_aperea
ENSGAFG00000018890	cpsf1	100	83.929	ENSCPOG00000011448	CPSF1	95	83.929	Cavia_porcellus
ENSGAFG00000018890	cpsf1	100	85.714	ENSCCAG00000037658	CPSF1	95	85.714	Cebus_capucinus
ENSGAFG00000018890	cpsf1	100	85.714	ENSCATG00000037234	CPSF1	95	85.714	Cercocebus_atys
ENSGAFG00000018890	cpsf1	100	83.929	ENSCLAG00000012166	CPSF1	95	83.929	Chinchilla_lanigera
ENSGAFG00000018890	cpsf1	100	85.714	ENSCSAG00000008502	CPSF1	95	85.714	Chlorocebus_sabaeus
ENSGAFG00000018890	cpsf1	99	78.571	ENSCPBG00000018910	CPSF1	92	78.614	Chrysemys_picta_bellii
ENSGAFG00000018890	cpsf1	95	48.134	ENSCING00000000514	-	94	48.134	Ciona_intestinalis
ENSGAFG00000018890	cpsf1	99	50.000	ENSCSAVG00000002293	-	96	50.000	Ciona_savignyi
ENSGAFG00000018890	cpsf1	96	85.714	ENSCANG00000032760	CPSF1	92	85.714	Colobus_angolensis_palliatus
ENSGAFG00000018890	cpsf1	100	85.714	ENSCGRG00001016344	Cpsf1	95	85.714	Cricetulus_griseus_chok1gshd
ENSGAFG00000018890	cpsf1	100	85.714	ENSCGRG00000003118	Cpsf1	95	85.714	Cricetulus_griseus_crigri
ENSGAFG00000018890	cpsf1	100	80.694	ENSCSEG00000013464	cpsf1	100	80.486	Cynoglossus_semilaevis
ENSGAFG00000018890	cpsf1	85	90.220	ENSCVAG00000014059	cpsf1	84	90.120	Cyprinodon_variegatus
ENSGAFG00000018890	cpsf1	100	82.870	ENSDARG00000034178	cpsf1	96	83.057	Danio_rerio
ENSGAFG00000018890	cpsf1	62	76.897	ENSDNOG00000043654	CPSF1	95	75.134	Dasypus_novemcinctus
ENSGAFG00000018890	cpsf1	96	85.714	ENSDORG00000006278	Cpsf1	94	85.714	Dipodomys_ordii
ENSGAFG00000018890	cpsf1	94	44.436	FBgn0024698	Cpsf160	89	44.436	Drosophila_melanogaster
ENSGAFG00000018890	cpsf1	79	69.736	ENSETEG00000006022	CPSF1	77	69.442	Echinops_telfairi
ENSGAFG00000018890	cpsf1	100	83.929	ENSEASG00005010774	CPSF1	95	83.929	Equus_asinus_asinus
ENSGAFG00000018890	cpsf1	100	83.929	ENSECAG00000022209	CPSF1	95	83.929	Equus_caballus
ENSGAFG00000018890	cpsf1	100	82.143	ENSEEUG00000000471	CPSF1	96	82.143	Erinaceus_europaeus
ENSGAFG00000018890	cpsf1	100	87.500	ENSELUG00000012271	cpsf1	96	87.500	Esox_lucius
ENSGAFG00000018890	cpsf1	100	83.929	ENSFDAG00000016060	CPSF1	95	83.929	Fukomys_damarensis
ENSGAFG00000018890	cpsf1	100	90.562	ENSFHEG00000016801	cpsf1	96	90.337	Fundulus_heteroclitus
ENSGAFG00000018890	cpsf1	99	91.071	ENSGMOG00000000796	cpsf1	97	83.677	Gadus_morhua
ENSGAFG00000018890	cpsf1	100	87.205	ENSGACG00000008703	cpsf1	99	85.426	Gasterosteus_aculeatus
ENSGAFG00000018890	cpsf1	97	86.275	ENSGAGG00000004276	CPSF1	98	81.636	Gopherus_agassizii
ENSGAFG00000018890	cpsf1	100	85.714	ENSGGOG00000016185	CPSF1	95	85.714	Gorilla_gorilla
ENSGAFG00000018890	cpsf1	100	87.851	ENSHBUG00000018900	cpsf1	95	87.699	Haplochromis_burtoni
ENSGAFG00000018890	cpsf1	99	83.929	ENSHGLG00000016139	CPSF1	94	83.929	Heterocephalus_glaber_female
ENSGAFG00000018890	cpsf1	99	83.929	ENSHGLG00100009750	CPSF1	94	83.929	Heterocephalus_glaber_male
ENSGAFG00000018890	cpsf1	100	85.714	ENSHCOG00000018509	cpsf1	96	85.714	Hippocampus_comes
ENSGAFG00000018890	cpsf1	100	83.929	ENSIPUG00000011259	cpsf1	95	83.929	Ictalurus_punctatus
ENSGAFG00000018890	cpsf1	96	83.929	ENSSTOG00000009957	CPSF1	94	83.929	Ictidomys_tridecemlineatus
ENSGAFG00000018890	cpsf1	99	85.714	ENSJJAG00000023002	Cpsf1	94	85.714	Jaculus_jaculus
ENSGAFG00000018890	cpsf1	90	84.264	ENSKMAG00000001940	cpsf1	95	84.264	Kryptolebias_marmoratus
ENSGAFG00000018890	cpsf1	100	89.286	ENSLBEG00000003601	cpsf1	96	89.286	Labrus_bergylta
ENSGAFG00000018890	cpsf1	88	83.929	ENSLACG00000000233	CPSF1	95	83.929	Latimeria_chalumnae
ENSGAFG00000018890	cpsf1	100	87.500	ENSLOCG00000008484	cpsf1	95	87.500	Lepisosteus_oculatus
ENSGAFG00000018890	cpsf1	96	75.887	ENSLAFG00000022601	CPSF1	95	75.887	Loxodonta_africana
ENSGAFG00000018890	cpsf1	100	85.714	ENSMFAG00000037013	CPSF1	95	85.714	Macaca_fascicularis
ENSGAFG00000018890	cpsf1	100	85.714	ENSMMUG00000007380	CPSF1	95	85.714	Macaca_mulatta
ENSGAFG00000018890	cpsf1	96	85.714	ENSMNEG00000043564	CPSF1	95	85.714	Macaca_nemestrina
ENSGAFG00000018890	cpsf1	100	88.235	ENSMLEG00000043010	CPSF1	97	88.235	Mandrillus_leucophaeus
ENSGAFG00000018890	cpsf1	100	91.071	ENSMAMG00000003803	cpsf1	96	91.071	Mastacembelus_armatus
ENSGAFG00000018890	cpsf1	100	87.500	ENSMZEG00005001168	cpsf1	95	87.500	Maylandia_zebra
ENSGAFG00000018890	cpsf1	100	85.714	ENSMAUG00000003601	Cpsf1	95	85.714	Mesocricetus_auratus
ENSGAFG00000018890	cpsf1	100	83.929	ENSMICG00000015767	CPSF1	95	83.929	Microcebus_murinus
ENSGAFG00000018890	cpsf1	100	85.714	ENSMOCG00000022758	Cpsf1	95	85.714	Microtus_ochrogaster
ENSGAFG00000018890	cpsf1	100	89.286	ENSMMOG00000021245	cpsf1	95	89.286	Mola_mola
ENSGAFG00000018890	cpsf1	100	85.714	ENSMODG00000010755	CPSF1	96	85.714	Monodelphis_domestica
ENSGAFG00000018890	cpsf1	99	91.071	ENSMALG00000020545	cpsf1	95	91.071	Monopterus_albus
ENSGAFG00000018890	cpsf1	100	85.714	MGP_CAROLIEiJ_G0019936	Cpsf1	95	85.714	Mus_caroli
ENSGAFG00000018890	cpsf1	100	85.714	ENSMUSG00000034022	Cpsf1	95	85.714	Mus_musculus
ENSGAFG00000018890	cpsf1	100	85.714	MGP_PahariEiJ_G0019946	Cpsf1	95	85.714	Mus_pahari
ENSGAFG00000018890	cpsf1	100	85.714	MGP_SPRETEiJ_G0020839	Cpsf1	95	85.714	Mus_spretus
ENSGAFG00000018890	cpsf1	93	76.240	ENSMPUG00000006419	CPSF1	90	76.400	Mustela_putorius_furo
ENSGAFG00000018890	cpsf1	100	85.714	ENSNGAG00000022460	Cpsf1	95	85.714	Nannospalax_galili
ENSGAFG00000018890	cpsf1	100	87.500	ENSNBRG00000000813	cpsf1	95	87.500	Neolamprologus_brichardi
ENSGAFG00000018890	cpsf1	82	64.665	ENSNLEG00000010633	-	89	64.469	Nomascus_leucogenys
ENSGAFG00000018890	cpsf1	78	85.714	ENSMEUG00000014922	CPSF1	76	85.714	Notamacropus_eugenii
ENSGAFG00000018890	cpsf1	60	86.842	ENSOPRG00000004693	-	66	86.842	Ochotona_princeps
ENSGAFG00000018890	cpsf1	100	83.929	ENSODEG00000013995	CPSF1	95	83.929	Octodon_degus
ENSGAFG00000018890	cpsf1	100	87.179	ENSONIG00000007676	cpsf1	95	87.029	Oreochromis_niloticus
ENSGAFG00000018890	cpsf1	61	74.545	ENSOANG00000010716	CPSF1	88	73.846	Ornithorhynchus_anatinus
ENSGAFG00000018890	cpsf1	100	89.286	ENSORLG00000013544	cpsf1	94	94.355	Oryzias_latipes
ENSGAFG00000018890	cpsf1	100	89.286	ENSORLG00020021693	cpsf1	94	94.355	Oryzias_latipes_hni
ENSGAFG00000018890	cpsf1	100	89.286	ENSORLG00015009979	cpsf1	95	89.286	Oryzias_latipes_hsok
ENSGAFG00000018890	cpsf1	100	87.500	ENSOMEG00000011849	cpsf1	96	87.500	Oryzias_melastigma
ENSGAFG00000018890	cpsf1	100	83.929	ENSOGAG00000000315	CPSF1	95	83.929	Otolemur_garnettii
ENSGAFG00000018890	cpsf1	50	76.096	ENSOARG00000013594	-	89	76.096	Ovis_aries
ENSGAFG00000018890	cpsf1	100	87.755	ENSPPAG00000019280	CPSF1	95	88.235	Pan_paniscus
ENSGAFG00000018890	cpsf1	100	85.714	ENSPTRG00000049288	-	95	85.714	Pan_troglodytes
ENSGAFG00000018890	cpsf1	100	85.714	ENSPTRG00000051253	-	95	85.714	Pan_troglodytes
ENSGAFG00000018890	cpsf1	96	85.714	ENSPANG00000015005	CPSF1	95	85.714	Papio_anubis
ENSGAFG00000018890	cpsf1	99	85.714	ENSPKIG00000002582	cpsf1	94	85.714	Paramormyrops_kingsleyae
ENSGAFG00000018890	cpsf1	100	85.714	ENSPCIG00000009035	CPSF1	96	85.714	Phascolarctos_cinereus
ENSGAFG00000018890	cpsf1	99	93.363	ENSPFOG00000012870	cpsf1	94	93.363	Poecilia_formosa
ENSGAFG00000018890	cpsf1	99	94.081	ENSPREG00000016307	cpsf1	94	94.081	Poecilia_reticulata
ENSGAFG00000018890	cpsf1	100	85.714	ENSPPYG00000018973	CPSF1	96	85.714	Pongo_abelii
ENSGAFG00000018890	cpsf1	88	87.245	ENSPCAG00000011541	CPSF1	86	87.245	Procavia_capensis
ENSGAFG00000018890	cpsf1	98	83.929	ENSPCOG00000020001	CPSF1	94	83.929	Propithecus_coquereli
ENSGAFG00000018890	cpsf1	90	82.979	ENSPVAG00000006761	CPSF1	87	82.979	Pteropus_vampyrus
ENSGAFG00000018890	cpsf1	100	87.500	ENSPNYG00000004906	cpsf1	96	87.500	Pundamilia_nyererei
ENSGAFG00000018890	cpsf1	100	85.714	ENSPNAG00000024395	cpsf1	96	85.714	Pygocentrus_nattereri
ENSGAFG00000018890	cpsf1	100	85.714	ENSRNOG00000030705	Cpsf1	95	85.714	Rattus_norvegicus
ENSGAFG00000018890	cpsf1	100	85.714	ENSRBIG00000044907	CPSF1	95	85.714	Rhinopithecus_bieti
ENSGAFG00000018890	cpsf1	100	85.714	ENSRROG00000044861	CPSF1	95	85.714	Rhinopithecus_roxellana
ENSGAFG00000018890	cpsf1	96	85.714	ENSSBOG00000027177	CPSF1	95	85.714	Saimiri_boliviensis_boliviensis
ENSGAFG00000018890	cpsf1	100	85.714	ENSSHAG00000006500	CPSF1	96	85.714	Sarcophilus_harrisii
ENSGAFG00000018890	cpsf1	99	85.714	ENSSFOG00015004606	cpsf1	94	85.714	Scleropages_formosus
ENSGAFG00000018890	cpsf1	100	91.071	ENSSMAG00000020547	cpsf1	99	85.767	Scophthalmus_maximus
ENSGAFG00000018890	cpsf1	100	91.071	ENSSDUG00000001100	cpsf1	95	91.071	Seriola_dumerili
ENSGAFG00000018890	cpsf1	100	91.071	ENSSLDG00000003619	cpsf1	95	91.071	Seriola_lalandi_dorsalis
ENSGAFG00000018890	cpsf1	89	72.393	ENSSARG00000003643	CPSF1	87	72.051	Sorex_araneus
ENSGAFG00000018890	cpsf1	96	85.714	ENSSPUG00000014396	CPSF1	96	85.714	Sphenodon_punctatus
ENSGAFG00000018890	cpsf1	100	91.071	ENSSPAG00000005349	cpsf1	96	91.071	Stegastes_partitus
ENSGAFG00000018890	cpsf1	100	83.929	ENSSSCG00000005906	CPSF1	95	83.929	Sus_scrofa
ENSGAFG00000018890	cpsf1	96	85.219	ENSTRUG00000013134	cpsf1	96	84.604	Takifugu_rubripes
ENSGAFG00000018890	cpsf1	100	85.725	ENSTNIG00000014027	cpsf1	96	85.351	Tetraodon_nigroviridis
ENSGAFG00000018890	cpsf1	82	73.276	ENSTBEG00000001756	CPSF1	91	72.586	Tupaia_belangeri
ENSGAFG00000018890	cpsf1	88	83.929	ENSTTRG00000001937	CPSF1	85	83.929	Tursiops_truncatus
ENSGAFG00000018890	cpsf1	96	83.929	ENSUAMG00000006476	CPSF1	93	83.929	Ursus_americanus
ENSGAFG00000018890	cpsf1	99	96.899	ENSXCOG00000003608	cpsf1	94	96.899	Xiphophorus_couchianus
ENSGAFG00000018890	cpsf1	99	96.423	ENSXMAG00000005798	cpsf1	94	96.423	Xiphophorus_maculatus