EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000019019 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat containing 6C1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 35785 bases
Position: chrNHOQ01002164.1:1003526-1039310
Accession: ZDB-GENE-030131-7440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000028131	Ago_hook	PF10427.9	1.3e-07	1	1
ENSGAFP00000028133	Ago_hook	PF10427.9	1.5e-07	1	1
ENSGAFP00000028127	Ago_hook	PF10427.9	2.1e-07	1	1
ENSGAFP00000028123	Ago_hook	PF10427.9	2.2e-07	1	1
ENSGAFP00000028131	RRM_1	PF00076.22	0.00017	1	1
ENSGAFP00000028133	RRM_1	PF00076.22	0.00018	1	1
ENSGAFP00000028127	RRM_1	PF00076.22	0.0002	1	1
ENSGAFP00000028123	RRM_1	PF00076.22	0.0002	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000028412	-	5937	-	ENSGAFP00000028123	1858 (aa)	-	-
ENSGAFT00000028420	-	5485	-	ENSGAFP00000028131	1597 (aa)	-	-
ENSGAFT00000028422	-	5164	-	ENSGAFP00000028133	1695 (aa)	-	-
ENSGAFT00000028416	-	5826	-	ENSGAFP00000028127	1821 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000019019's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000019019's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000019019	tnrc6c1	100	48.923	ENSG00000078687	TNRC6C	100	48.840	Homo_sapiens
ENSGAFG00000019019	tnrc6c1	100	85.411	ENSAPOG00000019749	tnrc6c1	100	86.033	Acanthochromis_polyacanthus
ENSGAFG00000019019	tnrc6c1	99	46.760	ENSAMEG00000013756	TNRC6C	99	47.680	Ailuropoda_melanoleuca
ENSGAFG00000019019	tnrc6c1	100	73.273	ENSACIG00000008075	tnrc6c1	99	75.682	Amphilophus_citrinellus
ENSGAFG00000019019	tnrc6c1	100	84.922	ENSAOCG00000023968	tnrc6c1	100	85.630	Amphiprion_ocellaris
ENSGAFG00000019019	tnrc6c1	100	84.922	ENSAPEG00000009020	tnrc6c1	100	85.630	Amphiprion_percula
ENSGAFG00000019019	tnrc6c1	99	48.405	ENSAPLG00000005456	TNRC6C	99	48.654	Anas_platyrhynchos
ENSGAFG00000019019	tnrc6c1	99	48.755	ENSACAG00000016198	TNRC6C	95	49.325	Anolis_carolinensis
ENSGAFG00000019019	tnrc6c1	100	48.758	ENSANAG00000021554	TNRC6C	100	48.369	Aotus_nancymaae
ENSGAFG00000019019	tnrc6c1	100	72.226	ENSACLG00000000424	tnrc6c1	99	74.649	Astatotilapia_calliptera
ENSGAFG00000019019	tnrc6c1	97	49.089	ENSBTAG00000018658	TNRC6C	100	49.485	Bos_taurus
ENSGAFG00000019019	tnrc6c1	100	48.786	ENSCJAG00000019431	TNRC6C	100	48.453	Callithrix_jacchus
ENSGAFG00000019019	tnrc6c1	99	47.587	ENSCAFG00000005224	TNRC6C	99	47.887	Canis_familiaris
ENSGAFG00000019019	tnrc6c1	97	49.142	ENSCAFG00020006661	TNRC6C	100	48.333	Canis_lupus_dingo
ENSGAFG00000019019	tnrc6c1	99	47.905	ENSCHIG00000026004	TNRC6C	100	50.668	Capra_hircus
ENSGAFG00000019019	tnrc6c1	97	49.607	ENSTSYG00000005403	TNRC6C	100	49.402	Carlito_syrichta
ENSGAFG00000019019	tnrc6c1	100	45.967	ENSCAPG00000007307	TNRC6C	97	45.273	Cavia_aperea
ENSGAFG00000019019	tnrc6c1	100	49.139	ENSCPOG00000000467	TNRC6C	99	48.815	Cavia_porcellus
ENSGAFG00000019019	tnrc6c1	100	48.899	ENSCCAG00000030524	TNRC6C	100	48.895	Cebus_capucinus
ENSGAFG00000019019	tnrc6c1	100	49.172	ENSCATG00000033135	TNRC6C	100	48.868	Cercocebus_atys
ENSGAFG00000019019	tnrc6c1	100	50.139	ENSCLAG00000011139	TNRC6C	99	48.738	Chinchilla_lanigera
ENSGAFG00000019019	tnrc6c1	100	48.212	ENSCSAG00000005167	TNRC6C	99	47.419	Chlorocebus_sabaeus
ENSGAFG00000019019	tnrc6c1	69	62.384	ENSCHOG00000000088	TNRC6C	65	63.101	Choloepus_hoffmanni
ENSGAFG00000019019	tnrc6c1	99	49.709	ENSCPBG00000027960	TNRC6C	100	51.476	Chrysemys_picta_bellii
ENSGAFG00000019019	tnrc6c1	100	49.172	ENSCANG00000041771	TNRC6C	100	48.868	Colobus_angolensis_palliatus
ENSGAFG00000019019	tnrc6c1	99	48.099	ENSCGRG00001022686	Tnrc6c	100	48.087	Cricetulus_griseus_chok1gshd
ENSGAFG00000019019	tnrc6c1	99	48.382	ENSCGRG00000018041	Tnrc6c	100	48.087	Cricetulus_griseus_crigri
ENSGAFG00000019019	tnrc6c1	100	77.757	ENSCSEG00000012744	tnrc6c1	100	75.594	Cynoglossus_semilaevis
ENSGAFG00000019019	tnrc6c1	94	69.348	ENSDARG00000076847	tnrc6c1	100	59.508	Danio_rerio
ENSGAFG00000019019	tnrc6c1	100	48.517	ENSDNOG00000003247	TNRC6C	99	48.860	Dasypus_novemcinctus
ENSGAFG00000019019	tnrc6c1	99	45.785	ENSDORG00000004558	Tnrc6c	100	46.821	Dipodomys_ordii
ENSGAFG00000019019	tnrc6c1	91	54.734	ENSETEG00000005527	TNRC6C	86	54.772	Echinops_telfairi
ENSGAFG00000019019	tnrc6c1	97	47.504	ENSEASG00005004799	TNRC6C	100	49.137	Equus_asinus_asinus
ENSGAFG00000019019	tnrc6c1	98	47.431	ENSECAG00000012486	TNRC6C	98	48.258	Equus_caballus
ENSGAFG00000019019	tnrc6c1	91	55.657	ENSEEUG00000010008	TNRC6C	93	55.880	Erinaceus_europaeus
ENSGAFG00000019019	tnrc6c1	100	48.475	ENSFCAG00000028358	TNRC6C	100	48.535	Felis_catus
ENSGAFG00000019019	tnrc6c1	83	52.844	ENSFALG00000000848	TNRC6C	100	49.361	Ficedula_albicollis
ENSGAFG00000019019	tnrc6c1	100	49.750	ENSFDAG00000010368	TNRC6C	99	49.189	Fukomys_damarensis
ENSGAFG00000019019	tnrc6c1	100	92.875	ENSFHEG00000002936	tnrc6c1	99	93.006	Fundulus_heteroclitus
ENSGAFG00000019019	tnrc6c1	100	48.813	ENSGALG00000001725	TNRC6C	100	51.980	Gallus_gallus
ENSGAFG00000019019	tnrc6c1	100	73.345	ENSGACG00000012320	tnrc6c1	99	72.698	Gasterosteus_aculeatus
ENSGAFG00000019019	tnrc6c1	100	51.051	ENSGAGG00000022043	TNRC6C	100	50.621	Gopherus_agassizii
ENSGAFG00000019019	tnrc6c1	100	48.923	ENSGGOG00000011304	TNRC6C	100	48.647	Gorilla_gorilla
ENSGAFG00000019019	tnrc6c1	100	80.923	ENSHBUG00000010846	tnrc6c1	100	81.210	Haplochromis_burtoni
ENSGAFG00000019019	tnrc6c1	100	49.583	ENSHGLG00000004809	TNRC6C	99	47.998	Heterocephalus_glaber_female
ENSGAFG00000019019	tnrc6c1	100	49.116	ENSHGLG00100012597	TNRC6C	99	47.638	Heterocephalus_glaber_male
ENSGAFG00000019019	tnrc6c1	100	61.470	ENSIPUG00000000818	tnrc6c1	99	59.672	Ictalurus_punctatus
ENSGAFG00000019019	tnrc6c1	83	54.084	ENSSTOG00000009101	TNRC6C	99	48.896	Ictidomys_tridecemlineatus
ENSGAFG00000019019	tnrc6c1	99	48.567	ENSJJAG00000017055	Tnrc6c	99	47.265	Jaculus_jaculus
ENSGAFG00000019019	tnrc6c1	100	79.540	ENSKMAG00000021023	tnrc6c1	100	80.410	Kryptolebias_marmoratus
ENSGAFG00000019019	tnrc6c1	100	46.744	ENSLACG00000015283	TNRC6C	95	61.856	Latimeria_chalumnae
ENSGAFG00000019019	tnrc6c1	99	79.070	ENSLOCG00000013377	tnrc6c1	95	78.810	Lepisosteus_oculatus
ENSGAFG00000019019	tnrc6c1	99	47.349	ENSLAFG00000011122	TNRC6C	100	46.696	Loxodonta_africana
ENSGAFG00000019019	tnrc6c1	100	49.172	ENSMFAG00000043943	TNRC6C	100	48.868	Macaca_fascicularis
ENSGAFG00000019019	tnrc6c1	100	49.172	ENSMMUG00000011924	TNRC6C	100	48.868	Macaca_mulatta
ENSGAFG00000019019	tnrc6c1	100	49.117	ENSMNEG00000030405	TNRC6C	100	48.813	Macaca_nemestrina
ENSGAFG00000019019	tnrc6c1	100	49.172	ENSMLEG00000033436	TNRC6C	100	48.868	Mandrillus_leucophaeus
ENSGAFG00000019019	tnrc6c1	100	81.410	ENSMAMG00000023613	tnrc6c1	100	82.422	Mastacembelus_armatus
ENSGAFG00000019019	tnrc6c1	100	81.024	ENSMZEG00005010920	tnrc6c1	100	80.800	Maylandia_zebra
ENSGAFG00000019019	tnrc6c1	93	66.667	ENSMGAG00000003906	TNRC6C	91	64.894	Meleagris_gallopavo
ENSGAFG00000019019	tnrc6c1	97	49.972	ENSMAUG00000021618	Tnrc6c	100	49.283	Mesocricetus_auratus
ENSGAFG00000019019	tnrc6c1	100	49.198	ENSMICG00000003952	TNRC6C	100	49.501	Microcebus_murinus
ENSGAFG00000019019	tnrc6c1	99	48.019	ENSMOCG00000015879	Tnrc6c	99	49.459	Microtus_ochrogaster
ENSGAFG00000019019	tnrc6c1	100	79.468	ENSMMOG00000005203	tnrc6c1	100	79.221	Mola_mola
ENSGAFG00000019019	tnrc6c1	99	48.849	ENSMODG00000001785	TNRC6C	99	47.967	Monodelphis_domestica
ENSGAFG00000019019	tnrc6c1	99	48.040	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	48.650	Mus_caroli
ENSGAFG00000019019	tnrc6c1	99	47.780	ENSMUSG00000025571	Tnrc6c	99	48.650	Mus_musculus
ENSGAFG00000019019	tnrc6c1	99	47.913	MGP_PahariEiJ_G0018593	Tnrc6c	99	49.082	Mus_pahari
ENSGAFG00000019019	tnrc6c1	99	47.622	MGP_SPRETEiJ_G0018309	Tnrc6c	99	48.488	Mus_spretus
ENSGAFG00000019019	tnrc6c1	100	47.767	ENSMPUG00000013348	TNRC6C	98	47.499	Mustela_putorius_furo
ENSGAFG00000019019	tnrc6c1	99	45.794	ENSMLUG00000014431	TNRC6C	98	46.236	Myotis_lucifugus
ENSGAFG00000019019	tnrc6c1	99	48.652	ENSNGAG00000012203	Tnrc6c	99	47.638	Nannospalax_galili
ENSGAFG00000019019	tnrc6c1	100	81.098	ENSNBRG00000005344	tnrc6c1	100	81.727	Neolamprologus_brichardi
ENSGAFG00000019019	tnrc6c1	100	46.504	ENSNLEG00000000047	TNRC6C	93	45.290	Nomascus_leucogenys
ENSGAFG00000019019	tnrc6c1	84	75.532	ENSMEUG00000005104	TNRC6C	94	76.471	Notamacropus_eugenii
ENSGAFG00000019019	tnrc6c1	100	49.833	ENSODEG00000012499	TNRC6C	100	49.333	Octodon_degus
ENSGAFG00000019019	tnrc6c1	100	82.324	ENSONIG00000002210	tnrc6c1	100	82.199	Oreochromis_niloticus
ENSGAFG00000019019	tnrc6c1	70	100.000	ENSOANG00000009758	-	68	100.000	Ornithorhynchus_anatinus
ENSGAFG00000019019	tnrc6c1	100	79.415	ENSORLG00000009837	tnrc6c1	100	84.420	Oryzias_latipes
ENSGAFG00000019019	tnrc6c1	100	79.229	ENSORLG00020016510	tnrc6c1	100	79.818	Oryzias_latipes_hni
ENSGAFG00000019019	tnrc6c1	80	75.865	ENSORLG00015000171	tnrc6c1	99	76.453	Oryzias_latipes_hsok
ENSGAFG00000019019	tnrc6c1	100	81.083	ENSOMEG00000000357	tnrc6c1	100	80.704	Oryzias_melastigma
ENSGAFG00000019019	tnrc6c1	97	48.679	ENSOGAG00000007197	TNRC6C	100	48.285	Otolemur_garnettii
ENSGAFG00000019019	tnrc6c1	95	45.909	ENSOARG00000006041	TNRC6C	99	47.355	Ovis_aries
ENSGAFG00000019019	tnrc6c1	100	48.868	ENSPPAG00000027160	TNRC6C	100	48.785	Pan_paniscus
ENSGAFG00000019019	tnrc6c1	100	48.475	ENSPPRG00000018881	TNRC6C	100	48.476	Panthera_pardus
ENSGAFG00000019019	tnrc6c1	87	54.413	ENSPTIG00000008791	TNRC6C	85	54.009	Panthera_tigris_altaica
ENSGAFG00000019019	tnrc6c1	100	48.923	ENSPTRG00000009699	TNRC6C	100	48.840	Pan_troglodytes
ENSGAFG00000019019	tnrc6c1	100	49.254	ENSPANG00000019994	TNRC6C	100	48.949	Papio_anubis
ENSGAFG00000019019	tnrc6c1	100	54.645	ENSPKIG00000005428	tnrc6c1	100	56.397	Paramormyrops_kingsleyae
ENSGAFG00000019019	tnrc6c1	97	50.631	ENSPSIG00000018069	TNRC6C	99	49.084	Pelodiscus_sinensis
ENSGAFG00000019019	tnrc6c1	67	73.695	ENSPMGG00000022911	tnrc6c1	98	78.800	Periophthalmus_magnuspinnatus
ENSGAFG00000019019	tnrc6c1	100	49.392	ENSPEMG00000009785	Tnrc6c	100	47.537	Peromyscus_maniculatus_bairdii
ENSGAFG00000019019	tnrc6c1	54	39.424	ENSPCIG00000017421	-	99	39.106	Phascolarctos_cinereus
ENSGAFG00000019019	tnrc6c1	100	97.750	ENSPFOG00000012560	tnrc6c1	99	97.318	Poecilia_formosa
ENSGAFG00000019019	tnrc6c1	100	97.812	ENSPLAG00000021055	tnrc6c1	100	97.812	Poecilia_latipinna
ENSGAFG00000019019	tnrc6c1	100	48.076	ENSPPYG00000008679	TNRC6C	98	47.539	Pongo_abelii
ENSGAFG00000019019	tnrc6c1	72	65.924	ENSPCAG00000012510	TNRC6C	89	65.924	Procavia_capensis
ENSGAFG00000019019	tnrc6c1	100	49.362	ENSPCOG00000021451	TNRC6C	100	49.307	Propithecus_coquereli
ENSGAFG00000019019	tnrc6c1	74	60.150	ENSPVAG00000002008	TNRC6C	95	60.150	Pteropus_vampyrus
ENSGAFG00000019019	tnrc6c1	100	81.083	ENSPNYG00000014477	tnrc6c1	100	81.756	Pundamilia_nyererei
ENSGAFG00000019019	tnrc6c1	97	49.458	ENSRNOG00000022395	Tnrc6c	97	50.057	Rattus_norvegicus
ENSGAFG00000019019	tnrc6c1	100	49.172	ENSRBIG00000027777	TNRC6C	100	48.868	Rhinopithecus_bieti
ENSGAFG00000019019	tnrc6c1	100	49.172	ENSRROG00000042912	TNRC6C	100	48.868	Rhinopithecus_roxellana
ENSGAFG00000019019	tnrc6c1	100	47.967	ENSSBOG00000023981	TNRC6C	100	48.621	Saimiri_boliviensis_boliviensis
ENSGAFG00000019019	tnrc6c1	53	61.895	ENSSHAG00000018330	-	99	63.713	Sarcophilus_harrisii
ENSGAFG00000019019	tnrc6c1	100	59.777	ENSSFOG00015006475	tnrc6c1	100	57.441	Scleropages_formosus
ENSGAFG00000019019	tnrc6c1	89	61.589	ENSSFOG00015004735	-	99	65.491	Scleropages_formosus
ENSGAFG00000019019	tnrc6c1	100	82.056	ENSSMAG00000012761	tnrc6c1	100	81.745	Scophthalmus_maximus
ENSGAFG00000019019	tnrc6c1	100	84.644	ENSSDUG00000002366	tnrc6c1	98	84.624	Seriola_dumerili
ENSGAFG00000019019	tnrc6c1	100	84.519	ENSSLDG00000025613	tnrc6c1	100	84.457	Seriola_lalandi_dorsalis
ENSGAFG00000019019	tnrc6c1	70	60.448	ENSSARG00000006816	TNRC6C	91	60.448	Sorex_araneus
ENSGAFG00000019019	tnrc6c1	76	86.486	ENSSPUG00000007341	TNRC6C	92	100.000	Sphenodon_punctatus
ENSGAFG00000019019	tnrc6c1	98	85.262	ENSSPAG00000014977	tnrc6c1	98	85.672	Stegastes_partitus
ENSGAFG00000019019	tnrc6c1	94	56.660	ENSSSCG00000034373	TNRC6C	97	49.457	Sus_scrofa
ENSGAFG00000019019	tnrc6c1	83	55.256	ENSTGUG00000007733	TNRC6C	99	49.973	Taeniopygia_guttata
ENSGAFG00000019019	tnrc6c1	100	76.045	ENSTRUG00000011685	tnrc6c1	98	76.359	Takifugu_rubripes
ENSGAFG00000019019	tnrc6c1	100	70.876	ENSTNIG00000005273	tnrc6c1	100	76.567	Tetraodon_nigroviridis
ENSGAFG00000019019	tnrc6c1	68	50.341	ENSTBEG00000005046	TNRC6C	100	49.094	Tupaia_belangeri
ENSGAFG00000019019	tnrc6c1	97	50.057	ENSTTRG00000010828	TNRC6C	99	49.676	Tursiops_truncatus
ENSGAFG00000019019	tnrc6c1	99	47.545	ENSUMAG00000013614	TNRC6C	98	47.798	Ursus_maritimus
ENSGAFG00000019019	tnrc6c1	53	50.596	ENSVPAG00000006765	-	95	52.762	Vicugna_pacos
ENSGAFG00000019019	tnrc6c1	97	50.230	ENSVVUG00000015268	TNRC6C	100	50.614	Vulpes_vulpes
ENSGAFG00000019019	tnrc6c1	97	49.025	ENSXETG00000019470	tnrc6c	97	48.337	Xenopus_tropicalis
ENSGAFG00000019019	tnrc6c1	100	98.054	ENSXMAG00000025971	tnrc6c1	100	98.054	Xiphophorus_maculatus