EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGAFG00000019449 (Gene tree)
Gene ID
-
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Gambusia_affinis
Status
putative
Strand
Minus strand
Length
7019 bases
Position
chrNHOQ01002849.1:415409-422427
Accession
ZDB-GENE-030131-3275
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGAFP00000028795CPSF73-100_CPF11718.89.6e-5311
ENSGAFP00000028795Beta-CaspPF10996.81.3e-3311
ENSGAFP00000028795Lactamase_BPF00753.274e-0811
ENSGAFP00000028795RMMBLPF07521.121.5e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGAFT00000029093-1890-ENSGAFP00000028795629 (aa)--
Gene Model
Click here to download ENSGAFG00000019449's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000019449's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGAFG00000019449cpsf36136.528ENSGAFG00000019948ints116136.528
ENSGAFG00000019449cpsf310079.420ENSGAFG00000008016CPSF39185.374
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGAFG00000019449cpsf39982.830ENSG00000119203CPSF39782.830Homo_sapiens
ENSGAFG00000019449cpsf37392.779ENSAPOG00000012241CPSF38692.779Acanthochromis_polyacanthus
ENSGAFG00000019449cpsf39691.376ENSAPOG00000022087cpsf39991.376Acanthochromis_polyacanthus
ENSGAFG00000019449cpsf39982.989ENSAMEG00000008493CPSF39282.989Ailuropoda_melanoleuca
ENSGAFG00000019449cpsf310089.399ENSACIG00000009846cpsf310089.399Amphilophus_citrinellus
ENSGAFG00000019449cpsf310085.557ENSACIG00000023663CPSF310085.557Amphilophus_citrinellus
ENSGAFG00000019449cpsf310084.985ENSAOCG00000022056cpsf39791.200Amphiprion_ocellaris
ENSGAFG00000019449cpsf310085.692ENSAOCG00000010077CPSF310085.692Amphiprion_ocellaris
ENSGAFG00000019449cpsf310091.097ENSAPEG00000019526cpsf310091.097Amphiprion_percula
ENSGAFG00000019449cpsf39985.669ENSAPEG00000021167CPSF39985.669Amphiprion_percula
ENSGAFG00000019449cpsf310074.964ENSATEG00000014525CPSF39080.671Anabas_testudineus
ENSGAFG00000019449cpsf39989.841ENSATEG00000003959cpsf39989.841Anabas_testudineus
ENSGAFG00000019449cpsf39982.353ENSAPLG00000006941CPSF39282.353Anas_platyrhynchos
ENSGAFG00000019449cpsf39980.854ENSACAG00000001759CPSF39980.854Anolis_carolinensis
ENSGAFG00000019449cpsf39978.219ENSANAG00000031254CPSF39378.219Aotus_nancymaae
ENSGAFG00000019449cpsf310092.846ENSACLG00000014484cpsf310092.846Astatotilapia_calliptera
ENSGAFG00000019449cpsf310085.557ENSACLG00000018846CPSF310085.557Astatotilapia_calliptera
ENSGAFG00000019449cpsf310084.992ENSAMXG00000004786cpsf310084.992Astyanax_mexicanus
ENSGAFG00000019449cpsf39982.989ENSBTAG00000019735CPSF39282.989Bos_taurus
ENSGAFG00000019449cpsf39156.314WBGene00013460cpsf-38356.314Caenorhabditis_elegans
ENSGAFG00000019449cpsf39982.671ENSCJAG00000006276CPSF39282.671Callithrix_jacchus
ENSGAFG00000019449cpsf39982.989ENSCAFG00000003375CPSF38782.989Canis_familiaris
ENSGAFG00000019449cpsf38985.664ENSCAFG00020026799CPSF39185.664Canis_lupus_dingo
ENSGAFG00000019449cpsf39982.989ENSCHIG00000013973CPSF39282.989Capra_hircus
ENSGAFG00000019449cpsf39982.830ENSTSYG00000002967CPSF39282.830Carlito_syrichta
ENSGAFG00000019449cpsf39982.989ENSCAPG00000013851CPSF39482.989Cavia_aperea
ENSGAFG00000019449cpsf39982.989ENSCPOG00000011299CPSF39282.989Cavia_porcellus
ENSGAFG00000019449cpsf39982.671ENSCCAG00000036730CPSF39382.671Cebus_capucinus
ENSGAFG00000019449cpsf39980.990ENSCATG00000014770CPSF39187.617Cercocebus_atys
ENSGAFG00000019449cpsf39982.353ENSCLAG00000002727CPSF39282.353Chinchilla_lanigera
ENSGAFG00000019449cpsf39974.404ENSCSAG00000007125CPSF39174.404Chlorocebus_sabaeus
ENSGAFG00000019449cpsf38960.105ENSCHOG00000000180CPSF38560.105Choloepus_hoffmanni
ENSGAFG00000019449cpsf39976.667ENSCPBG00000014074CPSF39182.512Chrysemys_picta_bellii
ENSGAFG00000019449cpsf39967.089ENSCING00000007214-9067.089Ciona_intestinalis
ENSGAFG00000019449cpsf39971.630ENSCANG00000034435CPSF39271.630Colobus_angolensis_palliatus
ENSGAFG00000019449cpsf39982.671ENSCGRG00001013134Cpsf39282.671Cricetulus_griseus_chok1gshd
ENSGAFG00000019449cpsf39982.671ENSCGRG00000018319Cpsf39282.671Cricetulus_griseus_crigri
ENSGAFG00000019449cpsf310083.810ENSCSEG00000002021CPSF310083.810Cynoglossus_semilaevis
ENSGAFG00000019449cpsf310078.551ENSCVAG00000015067CPSF39184.579Cyprinodon_variegatus
ENSGAFG00000019449cpsf35091.346ENSCVAG00000022039-9491.346Cyprinodon_variegatus
ENSGAFG00000019449cpsf310078.551ENSDARG00000027649cpsf39184.420Danio_rerio
ENSGAFG00000019449cpsf39980.952ENSDNOG00000008940CPSF38780.952Dasypus_novemcinctus
ENSGAFG00000019449cpsf39484.255ENSDORG00000014263Cpsf39184.255Dipodomys_ordii
ENSGAFG00000019449cpsf39864.620FBgn0261065Cpsf739064.620Drosophila_melanogaster
ENSGAFG00000019449cpsf39574.172ENSETEG00000003893CPSF39274.172Echinops_telfairi
ENSGAFG00000019449cpsf39872.543ENSEBUG00000009018cpsf39072.543Eptatretus_burgeri
ENSGAFG00000019449cpsf39982.989ENSEASG00005003970CPSF39282.989Equus_asinus_asinus
ENSGAFG00000019449cpsf39982.989ENSECAG00000019911CPSF38987.044Equus_caballus
ENSGAFG00000019449cpsf39963.104ENSEEUG00000015422CPSF39963.104Erinaceus_europaeus
ENSGAFG00000019449cpsf39988.273ENSELUG00000013775cpsf39988.273Esox_lucius
ENSGAFG00000019449cpsf39982.989ENSFCAG00000007852CPSF39782.989Felis_catus
ENSGAFG00000019449cpsf39982.222ENSFALG00000006572CPSF39782.222Ficedula_albicollis
ENSGAFG00000019449cpsf39982.643ENSFDAG00000006317CPSF39182.643Fukomys_damarensis
ENSGAFG00000019449cpsf310087.464ENSFHEG00000014774cpsf39793.920Fundulus_heteroclitus
ENSGAFG00000019449cpsf36366.341ENSFHEG00000012186CPSF310066.341Fundulus_heteroclitus
ENSGAFG00000019449cpsf310081.132ENSGMOG00000003157cpsf39187.102Gadus_morhua
ENSGAFG00000019449cpsf39982.063ENSGALG00000016424CPSF39982.063Gallus_gallus
ENSGAFG00000019449cpsf37379.443ENSGAGG00000025583CPSF39379.443Gopherus_agassizii
ENSGAFG00000019449cpsf39982.830ENSGGOG00000001757CPSF39982.830Gorilla_gorilla
ENSGAFG00000019449cpsf310092.846ENSHBUG00000001188cpsf310092.846Haplochromis_burtoni
ENSGAFG00000019449cpsf36379.104ENSHBUG00000014332CPSF310079.104Haplochromis_burtoni
ENSGAFG00000019449cpsf39982.643ENSHGLG00000000666CPSF39182.643Heterocephalus_glaber_female
ENSGAFG00000019449cpsf39982.643ENSHGLG00100007765CPSF39182.643Heterocephalus_glaber_male
ENSGAFG00000019449cpsf39982.920ENSHCOG00000007251cpsf39189.423Hippocampus_comes
ENSGAFG00000019449cpsf39977.649ENSHCOG00000015957CPSF39183.150Hippocampus_comes
ENSGAFG00000019449cpsf39984.810ENSIPUG00000023488cpsf39984.810Ictalurus_punctatus
ENSGAFG00000019449cpsf39982.512ENSSTOG00000004476CPSF39282.512Ictidomys_tridecemlineatus
ENSGAFG00000019449cpsf39981.587ENSJJAG00000023415Cpsf39281.587Jaculus_jaculus
ENSGAFG00000019449cpsf310085.714ENSKMAG00000002806cpsf39792.160Kryptolebias_marmoratus
ENSGAFG00000019449cpsf310078.116ENSKMAG00000007317CPSF39184.102Kryptolebias_marmoratus
ENSGAFG00000019449cpsf39976.065ENSLBEG00000020569cpsf38681.935Labrus_bergylta
ENSGAFG00000019449cpsf35987.366ENSLBEG00000015018-9987.366Labrus_bergylta
ENSGAFG00000019449cpsf39579.604ENSLBEG00000013492CPSF39086.074Labrus_bergylta
ENSGAFG00000019449cpsf39969.956ENSLACG00000008308CPSF39175.318Latimeria_chalumnae
ENSGAFG00000019449cpsf310078.644ENSLOCG00000016823cpsf39184.335Lepisosteus_oculatus
ENSGAFG00000019449cpsf39982.353ENSLAFG00000009467CPSF39282.353Loxodonta_africana
ENSGAFG00000019449cpsf39982.671ENSMFAG00000001339CPSF39782.671Macaca_fascicularis
ENSGAFG00000019449cpsf39982.671ENSMMUG00000018038CPSF39782.671Macaca_mulatta
ENSGAFG00000019449cpsf39968.362ENSMNEG00000039447CPSF39168.362Macaca_nemestrina
ENSGAFG00000019449cpsf39982.830ENSMLEG00000026825CPSF38393.095Mandrillus_leucophaeus
ENSGAFG00000019449cpsf310085.354ENSMAMG00000008835CPSF310085.354Mastacembelus_armatus
ENSGAFG00000019449cpsf310085.851ENSMAMG00000003076cpsf310085.851Mastacembelus_armatus
ENSGAFG00000019449cpsf310085.557ENSMZEG00005006258CPSF310085.557Maylandia_zebra
ENSGAFG00000019449cpsf310092.846ENSMZEG00005014358cpsf310092.846Maylandia_zebra
ENSGAFG00000019449cpsf39982.381ENSMGAG00000013995CPSF39482.381Meleagris_gallopavo
ENSGAFG00000019449cpsf35875.200ENSMAUG00000000166Cpsf39975.200Mesocricetus_auratus
ENSGAFG00000019449cpsf39977.373ENSMICG00000002363CPSF39877.373Microcebus_murinus
ENSGAFG00000019449cpsf39979.840ENSMOCG00000020067Cpsf39179.840Microtus_ochrogaster
ENSGAFG00000019449cpsf37877.660ENSMMOG00000011923CPSF38577.660Mola_mola
ENSGAFG00000019449cpsf39984.211ENSMMOG00000018212CPSF39684.211Mola_mola
ENSGAFG00000019449cpsf39980.975ENSMODG00000014703CPSF39280.975Monodelphis_domestica
ENSGAFG00000019449cpsf39683.580ENSMALG00000011474CPSF39683.580Monopterus_albus
ENSGAFG00000019449cpsf310089.889ENSMALG00000016416cpsf310089.889Monopterus_albus
ENSGAFG00000019449cpsf39983.148MGP_CAROLIEiJ_G0017640Cpsf39283.148Mus_caroli
ENSGAFG00000019449cpsf39983.148ENSMUSG00000054309Cpsf39192.760Mus_musculus
ENSGAFG00000019449cpsf39982.989MGP_PahariEiJ_G0029397Cpsf39282.989Mus_pahari
ENSGAFG00000019449cpsf39983.148MGP_SPRETEiJ_G0018481Cpsf39283.148Mus_spretus
ENSGAFG00000019449cpsf39982.962ENSMPUG00000013213CPSF39282.962Mustela_putorius_furo
ENSGAFG00000019449cpsf39982.857ENSMLUG00000010636CPSF39282.857Myotis_lucifugus
ENSGAFG00000019449cpsf39982.830ENSNGAG00000019836Cpsf39282.830Nannospalax_galili
ENSGAFG00000019449cpsf310092.687ENSNBRG00000004770cpsf310092.687Neolamprologus_brichardi
ENSGAFG00000019449cpsf310085.557ENSNBRG00000010525CPSF310085.557Neolamprologus_brichardi
ENSGAFG00000019449cpsf39982.671ENSNLEG00000013359CPSF39782.671Nomascus_leucogenys
ENSGAFG00000019449cpsf39952.673ENSMEUG00000013117-9352.673Notamacropus_eugenii
ENSGAFG00000019449cpsf39973.248ENSOPRG00000008902CPSF39273.248Ochotona_princeps
ENSGAFG00000019449cpsf39982.512ENSODEG00000003129CPSF39282.512Octodon_degus
ENSGAFG00000019449cpsf310084.694ENSONIG00000018812cpsf39791.040Oreochromis_niloticus
ENSGAFG00000019449cpsf38881.883ENSOANG00000008577CPSF39981.883Ornithorhynchus_anatinus
ENSGAFG00000019449cpsf39982.989ENSOCUG00000003728CPSF39282.989Oryctolagus_cuniculus
ENSGAFG00000019449cpsf310083.965ENSORLG00000018854cpsf39190.560Oryzias_latipes
ENSGAFG00000019449cpsf310089.666ENSORLG00020013331cpsf310089.666Oryzias_latipes_hni
ENSGAFG00000019449cpsf310090.143ENSORLG00015011017cpsf310090.143Oryzias_latipes_hsok
ENSGAFG00000019449cpsf310083.819ENSOMEG00000010647cpsf38790.240Oryzias_melastigma
ENSGAFG00000019449cpsf39972.178ENSOGAG00000001680CPSF39272.178Otolemur_garnettii
ENSGAFG00000019449cpsf39982.989ENSOARG00000015073CPSF39282.989Ovis_aries
ENSGAFG00000019449cpsf39982.830ENSPPAG00000042457CPSF39282.830Pan_paniscus
ENSGAFG00000019449cpsf39982.830ENSPPRG00000016790CPSF39782.989Panthera_pardus
ENSGAFG00000019449cpsf39982.830ENSPTIG00000003920CPSF39982.989Panthera_tigris_altaica
ENSGAFG00000019449cpsf39982.830ENSPTRG00000011638CPSF39282.830Pan_troglodytes
ENSGAFG00000019449cpsf39982.830ENSPANG00000016798CPSF38490.909Papio_anubis
ENSGAFG00000019449cpsf310086.120ENSPKIG00000023646cpsf310086.120Paramormyrops_kingsleyae
ENSGAFG00000019449cpsf39982.381ENSPSIG00000016144CPSF39282.381Pelodiscus_sinensis
ENSGAFG00000019449cpsf36378.607ENSPMGG00000015311CPSF310078.607Periophthalmus_magnuspinnatus
ENSGAFG00000019449cpsf39190.925ENSPMGG00000006141-10084.579Periophthalmus_magnuspinnatus
ENSGAFG00000019449cpsf39982.512ENSPEMG00000017668Cpsf39282.671Peromyscus_maniculatus_bairdii
ENSGAFG00000019449cpsf37686.570ENSPMAG00000004841cpsf38986.570Petromyzon_marinus
ENSGAFG00000019449cpsf39981.132ENSPCIG00000009823CPSF39481.289Phascolarctos_cinereus
ENSGAFG00000019449cpsf310089.781ENSPFOG00000015922cpsf39796.314Poecilia_formosa
ENSGAFG00000019449cpsf310079.130ENSPFOG00000010418-9185.215Poecilia_formosa
ENSGAFG00000019449cpsf310089.781ENSPLAG00000000882cpsf39796.314Poecilia_latipinna
ENSGAFG00000019449cpsf36380.000ENSPLAG00000021300-10080.000Poecilia_latipinna
ENSGAFG00000019449cpsf310089.927ENSPMEG00000018309cpsf39796.474Poecilia_mexicana
ENSGAFG00000019449cpsf310073.654ENSPREG00000004482CPSF39079.073Poecilia_reticulata
ENSGAFG00000019449cpsf310097.774ENSPREG00000014875cpsf310097.774Poecilia_reticulata
ENSGAFG00000019449cpsf39978.219ENSPPYG00000012666CPSF39178.219Pongo_abelii
ENSGAFG00000019449cpsf38463.466ENSPCAG00000015042CPSF38163.466Procavia_capensis
ENSGAFG00000019449cpsf38779.832ENSPCOG00000023016CPSF39079.832Propithecus_coquereli
ENSGAFG00000019449cpsf39983.121ENSPVAG00000005324CPSF39283.121Pteropus_vampyrus
ENSGAFG00000019449cpsf310092.846ENSPNYG00000004405cpsf310092.846Pundamilia_nyererei
ENSGAFG00000019449cpsf38890.811ENSPNYG00000021047CPSF39390.811Pundamilia_nyererei
ENSGAFG00000019449cpsf39985.827ENSPNAG00000023060cpsf39985.827Pygocentrus_nattereri
ENSGAFG00000019449cpsf39983.121ENSRNOG00000052418Cpsf39183.121Rattus_norvegicus
ENSGAFG00000019449cpsf39978.459ENSRBIG00000041615CPSF39778.459Rhinopithecus_bieti
ENSGAFG00000019449cpsf39982.830ENSRROG00000033792CPSF39282.830Rhinopithecus_roxellana
ENSGAFG00000019449cpsf39737.413YLR277CYSH19237.413Saccharomyces_cerevisiae
ENSGAFG00000019449cpsf39978.855ENSSBOG00000027263CPSF39178.855Saimiri_boliviensis_boliviensis
ENSGAFG00000019449cpsf39982.035ENSSHAG00000007024CPSF39282.035Sarcophilus_harrisii
ENSGAFG00000019449cpsf310085.669ENSSFOG00015002108cpsf310085.669Scleropages_formosus
ENSGAFG00000019449cpsf39579.817ENSSMAG00000020534CPSF38786.509Scophthalmus_maximus
ENSGAFG00000019449cpsf310085.669ENSSDUG00000018498CPSF310085.669Seriola_dumerili
ENSGAFG00000019449cpsf310083.819ENSSDUG00000002828cpsf38890.240Seriola_dumerili
ENSGAFG00000019449cpsf310083.528ENSSLDG00000008469cpsf38889.920Seriola_lalandi_dorsalis
ENSGAFG00000019449cpsf310086.190ENSSLDG00000005234CPSF310086.190Seriola_lalandi_dorsalis
ENSGAFG00000019449cpsf38979.332ENSSARG00000005186CPSF38279.332Sorex_araneus
ENSGAFG00000019449cpsf39980.569ENSSPUG00000015525CPSF39280.569Sphenodon_punctatus
ENSGAFG00000019449cpsf310084.402ENSSPAG00000018579cpsf39790.880Stegastes_partitus
ENSGAFG00000019449cpsf310086.169ENSSPAG00000002906CPSF310086.169Stegastes_partitus
ENSGAFG00000019449cpsf39983.917ENSSSCG00000020799CPSF39983.917Sus_scrofa
ENSGAFG00000019449cpsf39982.063ENSTGUG00000013016CPSF39282.063Taeniopygia_guttata
ENSGAFG00000019449cpsf39981.579ENSTRUG00000007030cpsf39781.818Takifugu_rubripes
ENSGAFG00000019449cpsf36372.070ENSTRUG00000013905CPSF39972.070Takifugu_rubripes
ENSGAFG00000019449cpsf38386.174ENSTBEG00000002707CPSF37686.174Tupaia_belangeri
ENSGAFG00000019449cpsf38666.757ENSTTRG00000000861CPSF38066.757Tursiops_truncatus
ENSGAFG00000019449cpsf39583.775ENSUAMG00000007535CPSF38683.775Ursus_americanus
ENSGAFG00000019449cpsf39982.989ENSUMAG00000003676CPSF39782.989Ursus_maritimus
ENSGAFG00000019449cpsf39582.285ENSVPAG00000008041CPSF39582.285Vicugna_pacos
ENSGAFG00000019449cpsf39982.989ENSVVUG00000002194CPSF39282.989Vulpes_vulpes
ENSGAFG00000019449cpsf39974.891ENSXETG00000008263cpsf39080.892Xenopus_tropicalis
ENSGAFG00000019449cpsf310090.776ENSXCOG00000019695cpsf39797.588Xiphophorus_couchianus
ENSGAFG00000019449cpsf35878.763ENSXCOG00000000957-8778.763Xiphophorus_couchianus
ENSGAFG00000019449cpsf310079.565ENSXMAG00000027291CPSF39185.533Xiphophorus_maculatus
ENSGAFG00000019449cpsf310096.044ENSXMAG00000009784cpsf39896.044Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us