EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGAFG00000019750 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein%2C cytoplasmic 1a
Gene Type
protein_coding
Species
Gambusia_affinis
Status
putative
Strand
Plus strand
Length
6736 bases
Position
chrNHOQ01000190.1:205634-212369
Accession
ZDB-GENE-030131-3238
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGAFP00000029263PABPPF00658.186e-3211
ENSGAFP00000029262PABPPF00658.186.6e-3211
ENSGAFP00000029263RRM_5PF13893.63.3e-0812
ENSGAFP00000029263RRM_5PF13893.63.3e-0822
ENSGAFP00000029262RRM_5PF13893.64.1e-0812
ENSGAFP00000029262RRM_5PF13893.64.1e-0822
ENSGAFP00000029263RRM_1PF00076.226.5e-9314
ENSGAFP00000029263RRM_1PF00076.226.5e-9324
ENSGAFP00000029263RRM_1PF00076.226.5e-9334
ENSGAFP00000029263RRM_1PF00076.226.5e-9344
ENSGAFP00000029262RRM_1PF00076.228.9e-9314
ENSGAFP00000029262RRM_1PF00076.228.9e-9324
ENSGAFP00000029262RRM_1PF00076.228.9e-9334
ENSGAFP00000029262RRM_1PF00076.228.9e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGAFT00000029563-2909-ENSGAFP00000029262635 (aa)--
ENSGAFT00000029564-1806-ENSGAFP00000029263601 (aa)--
Gene Model
Click here to download ENSGAFG00000019750's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000019750's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGAFG00000019750pabpc1a6237.349ENSGAFG00000016015elavl38937.349
ENSGAFG00000019750pabpc1a6130.159ENSGAFG00000001124tial19035.036
ENSGAFG00000019750pabpc1a9866.066ENSGAFG00000021057pabpc1l9965.872
ENSGAFG00000019750pabpc1a6333.684ENSGAFG00000002548rbms2a5233.684
ENSGAFG00000019750pabpc1a6237.349ENSGAFG00000016517ELAVL27937.349
ENSGAFG00000019750pabpc1a6030.667ENSGAFG00000002242dtwd28630.667
ENSGAFG00000019750pabpc1a6036.047ENSGAFG00000004951-5736.047
ENSGAFG00000019750pabpc1a6130.263ENSGAFG00000000715-9630.263
ENSGAFG00000019750pabpc1a6332.632ENSGAFG00000009648rbms2b5132.632
ENSGAFG00000019750pabpc1a5839.759ENSGAFG00000002765celf5a6539.759
ENSGAFG00000019750pabpc1a6232.237ENSGAFG00000015956elavl47132.237
ENSGAFG00000019750pabpc1a9880.272ENSGAFG00000018195pabpc49591.667
ENSGAFG00000019750pabpc1a5037.349ENSGAFG00000021515celf46436.986
ENSGAFG00000019750pabpc1a5730.519ENSGAFG00000019133elavl1a8930.323
ENSGAFG00000019750pabpc1a6138.667ENSGAFG00000012337rbm197038.667
ENSGAFG00000019750pabpc1a10089.498ENSGAFG00000010193pabpc1b10089.655
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGAFG00000019750pabpc1a6180.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSGAFG00000019750pabpc1a6180.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSGAFG00000019750pabpc1a10090.282ENSAPOG00000017776pabpc1b10089.969Acanthochromis_polyacanthus
ENSGAFG00000019750pabpc1a10097.323ENSAPOG00000015105pabpc1a10097.323Acanthochromis_polyacanthus
ENSGAFG00000019750pabpc1a6180.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSGAFG00000019750pabpc1a10097.323ENSACIG00000004685pabpc1a10097.323Amphilophus_citrinellus
ENSGAFG00000019750pabpc1a10085.647ENSACIG00000018366pabpc1b10085.491Amphilophus_citrinellus
ENSGAFG00000019750pabpc1a10090.439ENSAOCG00000019839pabpc1b10090.125Amphiprion_ocellaris
ENSGAFG00000019750pabpc1a10097.795ENSAOCG00000011656pabpc1a10097.795Amphiprion_ocellaris
ENSGAFG00000019750pabpc1a10097.795ENSAPEG00000006963pabpc1a10097.795Amphiprion_percula
ENSGAFG00000019750pabpc1a10090.439ENSAPEG00000010435pabpc1b10090.125Amphiprion_percula
ENSGAFG00000019750pabpc1a10097.165ENSATEG00000024852pabpc1a10097.165Anabas_testudineus
ENSGAFG00000019750pabpc1a10089.515ENSATEG00000012917pabpc1b10089.358Anabas_testudineus
ENSGAFG00000019750pabpc1a6180.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSGAFG00000019750pabpc1a6180.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSGAFG00000019750pabpc1a10088.558ENSACLG00000014335pabpc1b10088.401Astatotilapia_calliptera
ENSGAFG00000019750pabpc1a10097.323ENSACLG00000009399pabpc1a10097.323Astatotilapia_calliptera
ENSGAFG00000019750pabpc1a10090.125ENSAMXG00000008599pabpc1b10089.969Astyanax_mexicanus
ENSGAFG00000019750pabpc1a6377.033ENSBTAG00000052491-9877.033Bos_taurus
ENSGAFG00000019750pabpc1a6279.024ENSBTAG00000050902-9879.024Bos_taurus
ENSGAFG00000019750pabpc1a6180.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSGAFG00000019750pabpc1a6379.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSGAFG00000019750pabpc1a6180.102ENSCHIG00000006283-9880.102Capra_hircus
ENSGAFG00000019750pabpc1a6180.102ENSCHIG00000011138-9880.102Capra_hircus
ENSGAFG00000019750pabpc1a6180.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSGAFG00000019750pabpc1a6180.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSGAFG00000019750pabpc1a6180.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSGAFG00000019750pabpc1a6180.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSGAFG00000019750pabpc1a6180.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSGAFG00000019750pabpc1a6178.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSGAFG00000019750pabpc1a6178.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSGAFG00000019750pabpc1a6180.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSGAFG00000019750pabpc1a6179.670ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSGAFG00000019750pabpc1a9996.994ENSCSEG00000013324pabpc1a10096.994Cynoglossus_semilaevis
ENSGAFG00000019750pabpc1a10088.750ENSCSEG00000015241-10088.715Cynoglossus_semilaevis
ENSGAFG00000019750pabpc1a10098.110ENSCVAG00000021872pabpc1a10098.110Cyprinodon_variegatus
ENSGAFG00000019750pabpc1a10087.167ENSCVAG00000005489pabpc1b10087.011Cyprinodon_variegatus
ENSGAFG00000019750pabpc1a10091.536ENSDARG00000017219pabpc1a10091.536Danio_rerio
ENSGAFG00000019750pabpc1a10089.028ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSGAFG00000019750pabpc1a6180.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSGAFG00000019750pabpc1a6177.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSGAFG00000019750pabpc1a6378.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSGAFG00000019750pabpc1a6378.641ENSECAG00000002620-9878.641Equus_caballus
ENSGAFG00000019750pabpc1a6276.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSGAFG00000019750pabpc1a10088.438ENSELUG00000015062-10088.125Esox_lucius
ENSGAFG00000019750pabpc1a6358.621ENSELUG00000005389-9758.621Esox_lucius
ENSGAFG00000019750pabpc1a9993.553ENSELUG00000003614pabpc1a10093.553Esox_lucius
ENSGAFG00000019750pabpc1a6180.102ENSFCAG00000039701-9880.102Felis_catus
ENSGAFG00000019750pabpc1a6180.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSGAFG00000019750pabpc1a10097.953ENSFHEG00000018979pabpc1a10097.953Fundulus_heteroclitus
ENSGAFG00000019750pabpc1a10089.185ENSFHEG00000008186pabpc1b10089.498Fundulus_heteroclitus
ENSGAFG00000019750pabpc1a9694.103ENSGMOG00000002448-10080.465Gadus_morhua
ENSGAFG00000019750pabpc1a9993.663ENSGMOG00000013448pabpc1a9993.354Gadus_morhua
ENSGAFG00000019750pabpc1a10097.165ENSGACG00000003572pabpc1a10097.165Gasterosteus_aculeatus
ENSGAFG00000019750pabpc1a10087.442ENSGACG00000003771pabpc1b10087.752Gasterosteus_aculeatus
ENSGAFG00000019750pabpc1a6180.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSGAFG00000019750pabpc1a6180.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSGAFG00000019750pabpc1a10088.558ENSHBUG00000002075pabpc1b10088.401Haplochromis_burtoni
ENSGAFG00000019750pabpc1a10097.323ENSHBUG00000020487pabpc1a10097.323Haplochromis_burtoni
ENSGAFG00000019750pabpc1a6179.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSGAFG00000019750pabpc1a6179.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSGAFG00000019750pabpc1a6179.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSGAFG00000019750pabpc1a9874.945ENSHCOG00000003175pabpc1b9969.672Hippocampus_comes
ENSGAFG00000019750pabpc1a10096.850ENSHCOG00000013502pabpc1a10096.850Hippocampus_comes
ENSGAFG00000019750pabpc1a10085.440ENSIPUG00000010791-10085.440Ictalurus_punctatus
ENSGAFG00000019750pabpc1a8858.209ENSIPUG00000018724-8658.209Ictalurus_punctatus
ENSGAFG00000019750pabpc1a10090.079ENSIPUG00000008848pabpc1a10089.921Ictalurus_punctatus
ENSGAFG00000019750pabpc1a7358.087ENSIPUG00000021244-6057.143Ictalurus_punctatus
ENSGAFG00000019750pabpc1a6179.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSGAFG00000019750pabpc1a6179.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSGAFG00000019750pabpc1a6178.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSGAFG00000019750pabpc1a10087.893ENSKMAG00000008049pabpc1b10088.050Kryptolebias_marmoratus
ENSGAFG00000019750pabpc1a10097.480ENSKMAG00000000605pabpc1a10097.480Kryptolebias_marmoratus
ENSGAFG00000019750pabpc1a10088.871ENSLBEG00000026845pabpc1b10088.558Labrus_bergylta
ENSGAFG00000019750pabpc1a10097.165ENSLBEG00000024002-10097.165Labrus_bergylta
ENSGAFG00000019750pabpc1a6178.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSGAFG00000019750pabpc1a6179.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSGAFG00000019750pabpc1a6180.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSGAFG00000019750pabpc1a6180.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSGAFG00000019750pabpc1a6180.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSGAFG00000019750pabpc1a6180.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSGAFG00000019750pabpc1a6180.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSGAFG00000019750pabpc1a10089.185ENSMAMG00000014610pabpc1b10089.342Mastacembelus_armatus
ENSGAFG00000019750pabpc1a10097.323ENSMAMG00000004502-10097.323Mastacembelus_armatus
ENSGAFG00000019750pabpc1a10088.558ENSMZEG00005026745pabpc1b10088.401Maylandia_zebra
ENSGAFG00000019750pabpc1a10097.323ENSMZEG00005025416pabpc1a10097.323Maylandia_zebra
ENSGAFG00000019750pabpc1a6180.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSGAFG00000019750pabpc1a10084.976ENSMMOG00000018009pabpc1b10084.976Mola_mola
ENSGAFG00000019750pabpc1a10095.312ENSMMOG00000018044pabpc1a10095.370Mola_mola
ENSGAFG00000019750pabpc1a9872.337ENSMODG00000013156-9872.496Monodelphis_domestica
ENSGAFG00000019750pabpc1a9966.041ENSMODG00000015024-9965.674Monodelphis_domestica
ENSGAFG00000019750pabpc1a10097.165ENSMALG00000013020-10097.165Monopterus_albus
ENSGAFG00000019750pabpc1a10087.252ENSMALG00000006066pabpc1b10087.252Monopterus_albus
ENSGAFG00000019750pabpc1a6181.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSGAFG00000019750pabpc1a10097.165ENSNBRG00000003068-10097.165Neolamprologus_brichardi
ENSGAFG00000019750pabpc1a10088.558ENSNBRG00000013737pabpc1b10088.401Neolamprologus_brichardi
ENSGAFG00000019750pabpc1a6180.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSGAFG00000019750pabpc1a6179.592ENSODEG00000018540-9879.592Octodon_degus
ENSGAFG00000019750pabpc1a10096.693ENSONIG00000006871-10096.693Oreochromis_niloticus
ENSGAFG00000019750pabpc1a10088.871ENSONIG00000002717pabpc1b10088.715Oreochromis_niloticus
ENSGAFG00000019750pabpc1a6180.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSGAFG00000019750pabpc1a10084.615ENSORLG00000003008-10084.458Oryzias_latipes
ENSGAFG00000019750pabpc1a9998.571ENSORLG00000002691pabpc1a10096.378Oryzias_latipes
ENSGAFG00000019750pabpc1a10096.535ENSORLG00020022398pabpc1a10096.535Oryzias_latipes_hni
ENSGAFG00000019750pabpc1a10084.615ENSORLG00020022259-10084.458Oryzias_latipes_hni
ENSGAFG00000019750pabpc1a10084.929ENSORLG00015010932-10084.772Oryzias_latipes_hsok
ENSGAFG00000019750pabpc1a10096.378ENSORLG00015013633pabpc110096.378Oryzias_latipes_hsok
ENSGAFG00000019750pabpc1a10097.323ENSOMEG00000020219pabpc1a10097.323Oryzias_melastigma
ENSGAFG00000019750pabpc1a9081.693ENSOMEG00000013627pabpc1b10081.693Oryzias_melastigma
ENSGAFG00000019750pabpc1a6180.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSGAFG00000019750pabpc1a6180.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSGAFG00000019750pabpc1a6180.102ENSOARG00000005943-9880.102Ovis_aries
ENSGAFG00000019750pabpc1a6180.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSGAFG00000019750pabpc1a6180.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSGAFG00000019750pabpc1a6180.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSGAFG00000019750pabpc1a6180.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSGAFG00000019750pabpc1a6180.102ENSPANG00000011549-9880.102Papio_anubis
ENSGAFG00000019750pabpc1a10089.812ENSPKIG00000005676pabpc1b10089.812Paramormyrops_kingsleyae
ENSGAFG00000019750pabpc1a7491.704ENSPMGG00000023134-9791.704Periophthalmus_magnuspinnatus
ENSGAFG00000019750pabpc1a7497.534ENSPMGG00000022487pabpc1a9297.753Periophthalmus_magnuspinnatus
ENSGAFG00000019750pabpc1a9971.791ENSPCIG00000016995-5571.429Phascolarctos_cinereus
ENSGAFG00000019750pabpc1a10096.754ENSPFOG00000010815pabpc1a10096.754Poecilia_formosa
ENSGAFG00000019750pabpc1a10088.401ENSPFOG00000005917pabpc1b10089.342Poecilia_formosa
ENSGAFG00000019750pabpc1a10088.715ENSPLAG00000001388pabpc1b10089.655Poecilia_latipinna
ENSGAFG00000019750pabpc1a10098.740ENSPLAG00000004114pabpc1a10098.740Poecilia_latipinna
ENSGAFG00000019750pabpc1a10088.401ENSPMEG00000014399pabpc1b10089.342Poecilia_mexicana
ENSGAFG00000019750pabpc1a10098.740ENSPMEG00000001334pabpc1a10098.740Poecilia_mexicana
ENSGAFG00000019750pabpc1a10088.715ENSPREG00000010911pabpc1b10089.655Poecilia_reticulata
ENSGAFG00000019750pabpc1a10095.476ENSPREG00000019595pabpc1a10096.296Poecilia_reticulata
ENSGAFG00000019750pabpc1a6180.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSGAFG00000019750pabpc1a6280.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSGAFG00000019750pabpc1a6179.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSGAFG00000019750pabpc1a6280.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSGAFG00000019750pabpc1a10097.323ENSPNYG00000005192pabpc1a10097.323Pundamilia_nyererei
ENSGAFG00000019750pabpc1a10088.558ENSPNYG00000012578pabpc1b10088.401Pundamilia_nyererei
ENSGAFG00000019750pabpc1a10091.209ENSPNAG00000028408pabpc1a10090.895Pygocentrus_nattereri
ENSGAFG00000019750pabpc1a10089.498ENSPNAG00000024626pabpc1b10089.342Pygocentrus_nattereri
ENSGAFG00000019750pabpc1a6180.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSGAFG00000019750pabpc1a8789.437ENSRBIG00000028738-9589.437Rhinopithecus_bieti
ENSGAFG00000019750pabpc1a6180.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSGAFG00000019750pabpc1a9863.782ENSSHAG00000000511-10063.782Sarcophilus_harrisii
ENSGAFG00000019750pabpc1a10089.953ENSSFOG00015002752-10089.639Scleropages_formosus
ENSGAFG00000019750pabpc1a10089.482ENSSFOG00015006662pabpc1a10089.482Scleropages_formosus
ENSGAFG00000019750pabpc1a7378.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSGAFG00000019750pabpc1a10088.558ENSSMAG00000006869pabpc1b10088.401Scophthalmus_maximus
ENSGAFG00000019750pabpc1a10097.008ENSSMAG00000010803pabpc1a10097.008Scophthalmus_maximus
ENSGAFG00000019750pabpc1a10087.931ENSSDUG00000011965pabpc1b10087.774Seriola_dumerili
ENSGAFG00000019750pabpc1a10097.638ENSSDUG00000006675pabpc1a10097.638Seriola_dumerili
ENSGAFG00000019750pabpc1a10097.638ENSSLDG00000011661pabpc1a10097.638Seriola_lalandi_dorsalis
ENSGAFG00000019750pabpc1a10089.580ENSSLDG00000014156pabpc1b10089.425Seriola_lalandi_dorsalis
ENSGAFG00000019750pabpc1a10090.125ENSSPAG00000019265pabpc1b10089.969Stegastes_partitus
ENSGAFG00000019750pabpc1a10097.480ENSSPAG00000014453-10097.480Stegastes_partitus
ENSGAFG00000019750pabpc1a6180.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSGAFG00000019750pabpc1a6180.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSGAFG00000019750pabpc1a10086.228ENSTRUG00000003767-10086.228Takifugu_rubripes
ENSGAFG00000019750pabpc1a10095.126ENSTRUG00000011577-10095.126Takifugu_rubripes
ENSGAFG00000019750pabpc1a10086.604ENSTNIG00000009153pabpc1b10086.137Tetraodon_nigroviridis
ENSGAFG00000019750pabpc1a10092.403ENSTNIG00000013307pabpc1a10092.403Tetraodon_nigroviridis
ENSGAFG00000019750pabpc1a6180.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSGAFG00000019750pabpc1a6180.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSGAFG00000019750pabpc1a9755.833ENSUMAG00000023926-8969.613Ursus_maritimus
ENSGAFG00000019750pabpc1a6180.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSGAFG00000019750pabpc1a6279.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSGAFG00000019750pabpc1a9745.921ENSXETG00000015439-9745.278Xenopus_tropicalis
ENSGAFG00000019750pabpc1a10092.598ENSXCOG00000017066pabpc1a10092.598Xiphophorus_couchianus
ENSGAFG00000019750pabpc1a10086.460ENSXCOG00000019901pabpc1b10086.460Xiphophorus_couchianus
ENSGAFG00000019750pabpc1a10088.871ENSXMAG00000003753pabpc1b10089.655Xiphophorus_maculatus
ENSGAFG00000019750pabpc1a10098.740ENSXMAG00000002555pabpc1a10098.740Xiphophorus_maculatus

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