EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000019779 (Gene tree)
Gene ID: -
Gene Symbol: lig4
Alias: zgc:165595
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 8628 bases
Position: chrNHOQ01000238.1:178956-187583
Accession: ZDB-GENE-070820-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000029311	RNA_ligase	PF09414.10	6.4e-09	1	1
ENSGAFP00000029312	RNA_ligase	PF09414.10	6.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000029612	-	3001	-	ENSGAFP00000029311	946 (aa)	-	-
ENSGAFT00000029613	-	3588	-	ENSGAFP00000029312	946 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000019779's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000019779's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000019779	lig4	95	65.604	ENSG00000174405	LIG4	99	66.074	Homo_sapiens
ENSGAFG00000019779	lig4	96	87.842	ENSAPOG00000000866	lig4	99	87.404	Acanthochromis_polyacanthus
ENSGAFG00000019779	lig4	96	64.333	ENSAMEG00000019685	LIG4	98	64.254	Ailuropoda_melanoleuca
ENSGAFG00000019779	lig4	96	88.499	ENSACIG00000018309	lig4	99	88.061	Amphilophus_citrinellus
ENSGAFG00000019779	lig4	96	87.514	ENSAOCG00000011768	lig4	99	87.076	Amphiprion_ocellaris
ENSGAFG00000019779	lig4	96	87.733	ENSAPEG00000017815	lig4	99	87.295	Amphiprion_percula
ENSGAFG00000019779	lig4	96	87.500	ENSATEG00000005583	lig4	99	87.061	Anabas_testudineus
ENSGAFG00000019779	lig4	92	67.198	ENSAPLG00000001673	LIG4	99	67.198	Anas_platyrhynchos
ENSGAFG00000019779	lig4	95	67.367	ENSACAG00000014566	LIG4	99	67.709	Anolis_carolinensis
ENSGAFG00000019779	lig4	95	65.495	ENSANAG00000012446	LIG4	99	65.479	Aotus_nancymaae
ENSGAFG00000019779	lig4	96	87.185	ENSACLG00000027051	lig4	99	86.857	Astatotilapia_calliptera
ENSGAFG00000019779	lig4	96	80.305	ENSAMXG00000008192	lig4	95	80.305	Astyanax_mexicanus
ENSGAFG00000019779	lig4	95	64.945	ENSBTAG00000015868	LIG4	99	65.145	Bos_taurus
ENSGAFG00000019779	lig4	95	64.796	ENSCJAG00000014689	LIG4	99	65.145	Callithrix_jacchus
ENSGAFG00000019779	lig4	95	64.725	ENSCAFG00000006031	LIG4	99	64.922	Canis_familiaris
ENSGAFG00000019779	lig4	95	64.725	ENSCAFG00020021230	LIG4	99	64.922	Canis_lupus_dingo
ENSGAFG00000019779	lig4	95	64.615	ENSCHIG00000001019	LIG4	99	64.811	Capra_hircus
ENSGAFG00000019779	lig4	95	64.412	ENSCAPG00000006284	LIG4	99	64.254	Cavia_aperea
ENSGAFG00000019779	lig4	95	63.916	ENSCPOG00000014266	LIG4	99	64.143	Cavia_porcellus
ENSGAFG00000019779	lig4	95	65.385	ENSCCAG00000019971	LIG4	99	65.479	Cebus_capucinus
ENSGAFG00000019779	lig4	95	65.824	ENSCATG00000021075	LIG4	99	65.590	Cercocebus_atys
ENSGAFG00000019779	lig4	95	65.385	ENSCLAG00000003376	LIG4	99	65.590	Chinchilla_lanigera
ENSGAFG00000019779	lig4	95	65.495	ENSCSAG00000000211	LIG4	99	65.590	Chlorocebus_sabaeus
ENSGAFG00000019779	lig4	95	69.145	ENSCPBG00000023291	LIG4	98	69.308	Chrysemys_picta_bellii
ENSGAFG00000019779	lig4	68	46.832	ENSCING00000009536	-	96	47.310	Ciona_intestinalis
ENSGAFG00000019779	lig4	80	45.000	ENSCSAVG00000010336	-	98	44.914	Ciona_savignyi
ENSGAFG00000019779	lig4	95	64.945	ENSCANG00000005805	LIG4	99	65.145	Colobus_angolensis_palliatus
ENSGAFG00000019779	lig4	95	64.784	ENSCGRG00001012072	Lig4	99	64.739	Cricetulus_griseus_chok1gshd
ENSGAFG00000019779	lig4	95	64.784	ENSCGRG00000013417	Lig4	99	64.739	Cricetulus_griseus_crigri
ENSGAFG00000019779	lig4	94	84.512	ENSCSEG00000013905	lig4	96	84.400	Cynoglossus_semilaevis
ENSGAFG00000019779	lig4	96	90.700	ENSCVAG00000007896	lig4	99	89.934	Cyprinodon_variegatus
ENSGAFG00000019779	lig4	96	79.080	ENSDARG00000060620	lig4	99	78.861	Danio_rerio
ENSGAFG00000019779	lig4	95	64.764	ENSDNOG00000000513	LIG4	99	64.850	Dasypus_novemcinctus
ENSGAFG00000019779	lig4	95	65.604	ENSDORG00000027303	Lig4	99	65.590	Dipodomys_ordii
ENSGAFG00000019779	lig4	86	31.257	FBgn0030506	Lig4	86	31.722	Drosophila_melanogaster
ENSGAFG00000019779	lig4	94	63.525	ENSETEG00000015563	LIG4	99	63.293	Echinops_telfairi
ENSGAFG00000019779	lig4	96	45.141	ENSEBUG00000014243	lig4	99	44.514	Eptatretus_burgeri
ENSGAFG00000019779	lig4	95	64.835	ENSEASG00005022073	LIG4	99	64.811	Equus_asinus_asinus
ENSGAFG00000019779	lig4	95	64.615	ENSECAG00000003257	LIG4	99	64.588	Equus_caballus
ENSGAFG00000019779	lig4	95	82.131	ENSELUG00000006787	lig4	98	82.183	Esox_lucius
ENSGAFG00000019779	lig4	95	64.673	ENSFCAG00000031985	LIG4	99	64.254	Felis_catus
ENSGAFG00000019779	lig4	85	69.259	ENSFALG00000004214	LIG4	94	71.391	Ficedula_albicollis
ENSGAFG00000019779	lig4	95	63.736	ENSFDAG00000008973	LIG4	99	63.808	Fukomys_damarensis
ENSGAFG00000019779	lig4	96	91.028	ENSFHEG00000007398	lig4	91	90.810	Fundulus_heteroclitus
ENSGAFG00000019779	lig4	82	77.664	ENSGMOG00000012843	lig4	98	77.662	Gadus_morhua
ENSGAFG00000019779	lig4	95	65.827	ENSGALG00000016854	LIG4	98	66.444	Gallus_gallus
ENSGAFG00000019779	lig4	95	83.241	ENSGACG00000014135	lig4	98	83.687	Gasterosteus_aculeatus
ENSGAFG00000019779	lig4	95	65.385	ENSGGOG00000027771	LIG4	99	65.479	Gorilla_gorilla
ENSGAFG00000019779	lig4	96	86.966	ENSHBUG00000006245	lig4	99	86.637	Haplochromis_burtoni
ENSGAFG00000019779	lig4	95	64.317	ENSHGLG00000000718	LIG4	98	64.660	Heterocephalus_glaber_female
ENSGAFG00000019779	lig4	95	64.317	ENSHGLG00100003265	LIG4	98	64.660	Heterocephalus_glaber_male
ENSGAFG00000019779	lig4	96	81.291	ENSHCOG00000012010	lig4	99	81.182	Hippocampus_comes
ENSGAFG00000019779	lig4	96	77.656	ENSIPUG00000013748	lig4	98	78.212	Ictalurus_punctatus
ENSGAFG00000019779	lig4	95	66.113	ENSSTOG00000024303	LIG4	99	65.702	Ictidomys_tridecemlineatus
ENSGAFG00000019779	lig4	95	64.466	ENSJJAG00000006750	Lig4	99	64.811	Jaculus_jaculus
ENSGAFG00000019779	lig4	96	86.199	ENSKMAG00000001149	lig4	99	86.199	Kryptolebias_marmoratus
ENSGAFG00000019779	lig4	87	85.490	ENSLBEG00000014578	lig4	99	85.490	Labrus_bergylta
ENSGAFG00000019779	lig4	95	68.778	ENSLACG00000003282	LIG4	98	68.862	Latimeria_chalumnae
ENSGAFG00000019779	lig4	95	72.456	ENSLOCG00000008901	lig4	97	72.737	Lepisosteus_oculatus
ENSGAFG00000019779	lig4	95	64.254	ENSLAFG00000031152	LIG4	99	64.222	Loxodonta_africana
ENSGAFG00000019779	lig4	95	65.604	ENSMFAG00000037235	LIG4	99	65.702	Macaca_fascicularis
ENSGAFG00000019779	lig4	95	65.385	ENSMMUG00000008874	LIG4	99	65.479	Macaca_mulatta
ENSGAFG00000019779	lig4	95	65.604	ENSMNEG00000023575	LIG4	99	65.702	Macaca_nemestrina
ENSGAFG00000019779	lig4	95	65.385	ENSMLEG00000026720	LIG4	99	65.479	Mandrillus_leucophaeus
ENSGAFG00000019779	lig4	96	87.842	ENSMAMG00000008472	lig4	99	87.227	Mastacembelus_armatus
ENSGAFG00000019779	lig4	96	87.185	ENSMZEG00005001855	lig4	99	86.857	Maylandia_zebra
ENSGAFG00000019779	lig4	95	66.371	ENSMGAG00000015532	LIG4	98	66.444	Meleagris_gallopavo
ENSGAFG00000019779	lig4	95	63.476	ENSMOCG00000019000	Lig4	99	63.920	Microtus_ochrogaster
ENSGAFG00000019779	lig4	96	85.104	ENSMMOG00000004390	lig4	99	85.104	Mola_mola
ENSGAFG00000019779	lig4	95	65.862	ENSMODG00000025064	LIG4	99	65.740	Monodelphis_domestica
ENSGAFG00000019779	lig4	96	86.909	ENSMALG00000008555	lig4	99	86.469	Monopterus_albus
ENSGAFG00000019779	lig4	95	64.356	MGP_CAROLIEiJ_G0030809	Lig4	99	64.811	Mus_caroli
ENSGAFG00000019779	lig4	95	63.916	ENSMUSG00000049717	Lig4	99	64.365	Mus_musculus
ENSGAFG00000019779	lig4	95	64.466	MGP_PahariEiJ_G0021270	Lig4	99	64.922	Mus_pahari
ENSGAFG00000019779	lig4	95	64.136	MGP_SPRETEiJ_G0031917	Lig4	99	64.588	Mus_spretus
ENSGAFG00000019779	lig4	95	64.796	ENSMPUG00000018675	LIG4	99	64.922	Mustela_putorius_furo
ENSGAFG00000019779	lig4	95	65.495	ENSMLUG00000001267	LIG4	99	65.590	Myotis_lucifugus
ENSGAFG00000019779	lig4	95	65.055	ENSNGAG00000013258	Lig4	99	65.033	Nannospalax_galili
ENSGAFG00000019779	lig4	96	86.966	ENSNBRG00000021252	lig4	99	86.637	Neolamprologus_brichardi
ENSGAFG00000019779	lig4	95	64.945	ENSNLEG00000007888	LIG4	99	65.145	Nomascus_leucogenys
ENSGAFG00000019779	lig4	95	63.626	ENSOPRG00000005765	LIG4	99	63.474	Ochotona_princeps
ENSGAFG00000019779	lig4	95	63.586	ENSODEG00000019683	LIG4	99	64.031	Octodon_degus
ENSGAFG00000019779	lig4	96	86.966	ENSONIG00000011969	lig4	99	86.637	Oreochromis_niloticus
ENSGAFG00000019779	lig4	95	64.176	ENSOCUG00000015734	LIG4	99	64.031	Oryctolagus_cuniculus
ENSGAFG00000019779	lig4	96	83.097	ENSORLG00000004041	lig4	98	83.760	Oryzias_latipes
ENSGAFG00000019779	lig4	96	83.533	ENSORLG00020019607	lig4	98	84.205	Oryzias_latipes_hni
ENSGAFG00000019779	lig4	96	83.206	ENSORLG00015017754	lig4	98	83.871	Oryzias_latipes_hsok
ENSGAFG00000019779	lig4	73	88.696	ENSOMEG00000003459	lig4	100	88.696	Oryzias_melastigma
ENSGAFG00000019779	lig4	96	65.060	ENSOGAG00000032120	LIG4	98	65.367	Otolemur_garnettii
ENSGAFG00000019779	lig4	79	68.683	ENSOARG00000005590	LIG4	97	69.304	Ovis_aries
ENSGAFG00000019779	lig4	95	65.385	ENSPPAG00000032998	LIG4	99	65.479	Pan_paniscus
ENSGAFG00000019779	lig4	95	65.227	ENSPPRG00000017804	LIG4	99	64.811	Panthera_pardus
ENSGAFG00000019779	lig4	95	65.116	ENSPTIG00000010051	LIG4	99	64.699	Panthera_tigris_altaica
ENSGAFG00000019779	lig4	95	65.495	ENSPTRG00000006025	LIG4	99	65.590	Pan_troglodytes
ENSGAFG00000019779	lig4	95	65.934	ENSPANG00000007562	LIG4	99	65.702	Papio_anubis
ENSGAFG00000019779	lig4	95	77.398	ENSPKIG00000011645	lig4	97	77.877	Paramormyrops_kingsleyae
ENSGAFG00000019779	lig4	95	68.172	ENSPSIG00000001504	LIG4	98	68.827	Pelodiscus_sinensis
ENSGAFG00000019779	lig4	94	81.027	ENSPMGG00000013486	lig4	99	80.371	Periophthalmus_magnuspinnatus
ENSGAFG00000019779	lig4	95	64.341	ENSPEMG00000000076	Lig4	99	64.294	Peromyscus_maniculatus_bairdii
ENSGAFG00000019779	lig4	95	65.055	ENSPCIG00000021882	LIG4	99	65.517	Phascolarctos_cinereus
ENSGAFG00000019779	lig4	96	98.020	ENSPFOG00000000797	lig4	99	98.020	Poecilia_formosa
ENSGAFG00000019779	lig4	96	97.910	ENSPLAG00000001196	lig4	99	97.910	Poecilia_latipinna
ENSGAFG00000019779	lig4	96	98.020	ENSPMEG00000021353	lig4	99	98.020	Poecilia_mexicana
ENSGAFG00000019779	lig4	96	97.250	ENSPREG00000007323	lig4	99	97.250	Poecilia_reticulata
ENSGAFG00000019779	lig4	95	64.835	ENSPPYG00000005540	LIG4	99	64.922	Pongo_abelii
ENSGAFG00000019779	lig4	95	64.615	ENSPVAG00000016403	LIG4	99	64.588	Pteropus_vampyrus
ENSGAFG00000019779	lig4	96	86.966	ENSPNYG00000009660	lig4	99	86.637	Pundamilia_nyererei
ENSGAFG00000019779	lig4	95	81.758	ENSPNAG00000028056	lig4	98	81.676	Pygocentrus_nattereri
ENSGAFG00000019779	lig4	95	81.758	ENSPNAG00000028069	LIG4	98	81.676	Pygocentrus_nattereri
ENSGAFG00000019779	lig4	95	64.026	ENSRNOG00000014605	Lig4	99	64.365	Rattus_norvegicus
ENSGAFG00000019779	lig4	95	64.615	ENSRBIG00000039962	LIG4	99	64.699	Rhinopithecus_bieti
ENSGAFG00000019779	lig4	95	65.275	ENSRROG00000006040	LIG4	99	65.367	Rhinopithecus_roxellana
ENSGAFG00000019779	lig4	95	65.165	ENSSBOG00000019029	LIG4	99	65.145	Saimiri_boliviensis_boliviensis
ENSGAFG00000019779	lig4	95	63.187	ENSSHAG00000009525	LIG4	99	63.960	Sarcophilus_harrisii
ENSGAFG00000019779	lig4	96	77.998	ENSSFOG00015012835	lig4	98	78.547	Scleropages_formosus
ENSGAFG00000019779	lig4	96	82.366	ENSSMAG00000011267	lig4	99	81.818	Scophthalmus_maximus
ENSGAFG00000019779	lig4	96	87.637	ENSSDUG00000010343	lig4	99	87.418	Seriola_dumerili
ENSGAFG00000019779	lig4	96	86.214	ENSSLDG00000003239	lig4	99	85.886	Seriola_lalandi_dorsalis
ENSGAFG00000019779	lig4	95	64.906	ENSSARG00000006573	LIG4	99	64.373	Sorex_araneus
ENSGAFG00000019779	lig4	88	68.728	ENSSPUG00000002444	LIG4	99	68.490	Sphenodon_punctatus
ENSGAFG00000019779	lig4	96	88.171	ENSSPAG00000001609	lig4	99	87.623	Stegastes_partitus
ENSGAFG00000019779	lig4	94	65.329	ENSSSCG00000009540	LIG4	97	65.350	Sus_scrofa
ENSGAFG00000019779	lig4	95	66.926	ENSTGUG00000010795	LIG4	99	67.001	Taeniopygia_guttata
ENSGAFG00000019779	lig4	96	85.980	ENSTRUG00000009984	lig4	99	85.433	Takifugu_rubripes
ENSGAFG00000019779	lig4	96	83.461	ENSTNIG00000010348	lig4	99	83.352	Tetraodon_nigroviridis
ENSGAFG00000019779	lig4	95	65.055	ENSTBEG00000017741	LIG4	99	65.145	Tupaia_belangeri
ENSGAFG00000019779	lig4	95	64.066	ENSTTRG00000012660	LIG4	99	64.143	Tursiops_truncatus
ENSGAFG00000019779	lig4	95	64.505	ENSUAMG00000003773	LIG4	99	64.254	Ursus_americanus
ENSGAFG00000019779	lig4	96	67.544	ENSXETG00000002654	lig4	99	67.544	Xenopus_tropicalis
ENSGAFG00000019779	lig4	96	97.360	ENSXCOG00000017401	lig4	99	97.360	Xiphophorus_couchianus
ENSGAFG00000019779	lig4	96	97.582	ENSXMAG00000015142	lig4	99	97.582	Xiphophorus_maculatus