EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000019880 (Gene tree)
Gene ID: -
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 54328 bases
Position: chrNHOQ01000243.1:191520-245847
Accession: ZDB-GENE-030131-7120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000029489	ResIII	PF04851.15	4.2e-06	1	1
ENSGAFP00000029492	ResIII	PF04851.15	6.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000029791	-	5358	-	ENSGAFP00000029489	1527 (aa)	-	-
ENSGAFT00000029794	-	4629	-	ENSGAFP00000029492	1542 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000019880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000019880's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000019880	chd1	83	58.038	ENSGAFG00000001905	chd2	73	62.766
ENSGAFG00000019880	chd1	60	32.687	ENSGAFG00000014337	-	97	40.171

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000019880	chd1	92	82.844	ENSG00000153922	CHD1	96	72.477	Homo_sapiens
ENSGAFG00000019880	chd1	73	94.523	ENSAPOG00000005764	chd1	91	92.401	Acanthochromis_polyacanthus
ENSGAFG00000019880	chd1	87	85.312	ENSAOCG00000023105	chd1	83	84.121	Amphiprion_ocellaris
ENSGAFG00000019880	chd1	87	84.739	ENSAPEG00000013544	chd1	83	85.461	Amphiprion_percula
ENSGAFG00000019880	chd1	89	93.125	ENSATEG00000010676	chd1	86	81.720	Anabas_testudineus
ENSGAFG00000019880	chd1	73	85.779	ENSAMXG00000010843	chd1	88	85.779	Astyanax_mexicanus
ENSGAFG00000019880	chd1	92	82.844	ENSCATG00000032035	CHD1	83	81.694	Cercocebus_atys
ENSGAFG00000019880	chd1	92	82.844	ENSCSAG00000015339	CHD1	82	81.694	Chlorocebus_sabaeus
ENSGAFG00000019880	chd1	92	77.743	ENSCANG00000036916	CHD1	83	76.248	Colobus_angolensis_palliatus
ENSGAFG00000019880	chd1	95	81.763	ENSCGRG00001023943	Chd1	83	81.763	Cricetulus_griseus_chok1gshd
ENSGAFG00000019880	chd1	95	81.763	ENSCGRG00000008652	Chd1	82	81.763	Cricetulus_griseus_crigri
ENSGAFG00000019880	chd1	84	89.077	ENSCSEG00000009553	chd1	81	89.214	Cynoglossus_semilaevis
ENSGAFG00000019880	chd1	81	82.822	ENSEASG00005016110	CHD1	91	82.822	Equus_asinus_asinus
ENSGAFG00000019880	chd1	86	88.633	ENSELUG00000017677	chd1	79	88.633	Esox_lucius
ENSGAFG00000019880	chd1	79	88.006	ENSFHEG00000021164	chd1	89	87.927	Fundulus_heteroclitus
ENSGAFG00000019880	chd1	90	80.576	ENSGMOG00000001537	chd1	87	81.078	Gadus_morhua
ENSGAFG00000019880	chd1	86	82.407	ENSGALG00000031327	-	80	82.407	Gallus_gallus
ENSGAFG00000019880	chd1	92	76.006	ENSGGOG00000011463	CHD1	83	74.834	Gorilla_gorilla
ENSGAFG00000019880	chd1	87	82.083	ENSHCOG00000014222	chd1	80	90.166	Hippocampus_comes
ENSGAFG00000019880	chd1	87	80.444	ENSIPUG00000001369	chd1	81	88.940	Ictalurus_punctatus
ENSGAFG00000019880	chd1	61	83.380	ENSLAFG00000023183	CHD1	91	83.380	Loxodonta_africana
ENSGAFG00000019880	chd1	92	82.844	ENSMFAG00000031226	CHD1	83	81.694	Macaca_fascicularis
ENSGAFG00000019880	chd1	81	81.694	ENSMMUG00000014090	CHD1	90	81.694	Macaca_mulatta
ENSGAFG00000019880	chd1	92	82.844	ENSMNEG00000045073	CHD1	83	81.694	Macaca_nemestrina
ENSGAFG00000019880	chd1	92	74.400	ENSMLEG00000041096	CHD1	84	74.834	Mandrillus_leucophaeus
ENSGAFG00000019880	chd1	73	92.780	ENSMZEG00005010957	chd1	87	92.780	Maylandia_zebra
ENSGAFG00000019880	chd1	91	94.624	ENSMOCG00000019121	Chd1	84	94.624	Microtus_ochrogaster
ENSGAFG00000019880	chd1	84	91.908	ENSMALG00000013317	chd1	92	91.908	Monopterus_albus
ENSGAFG00000019880	chd1	95	82.870	MGP_CAROLIEiJ_G0021099	Chd1	91	88.418	Mus_caroli
ENSGAFG00000019880	chd1	95	82.870	ENSMUSG00000023852	Chd1	91	88.136	Mus_musculus
ENSGAFG00000019880	chd1	95	82.407	MGP_PahariEiJ_G0023414	Chd1	91	88.418	Mus_pahari
ENSGAFG00000019880	chd1	79	92.934	ENSNBRG00000006860	chd1	81	94.792	Neolamprologus_brichardi
ENSGAFG00000019880	chd1	93	82.844	ENSNLEG00000014493	CHD1	83	81.694	Nomascus_leucogenys
ENSGAFG00000019880	chd1	91	83.851	ENSOANG00000004891	CHD1	82	83.851	Ornithorhynchus_anatinus
ENSGAFG00000019880	chd1	62	95.763	ENSORLG00015016725	chd1	91	95.763	Oryzias_latipes_hsok
ENSGAFG00000019880	chd1	89	81.931	ENSPPAG00000043367	CHD1	84	79.790	Pan_paniscus
ENSGAFG00000019880	chd1	90	82.844	ENSPTRG00000017103	CHD1	83	81.694	Pan_troglodytes
ENSGAFG00000019880	chd1	92	82.844	ENSPANG00000006387	CHD1	83	81.694	Papio_anubis
ENSGAFG00000019880	chd1	85	84.855	ENSPKIG00000024719	chd1	83	80.226	Paramormyrops_kingsleyae
ENSGAFG00000019880	chd1	75	91.091	ENSPMGG00000005785	chd1	88	91.091	Periophthalmus_magnuspinnatus
ENSGAFG00000019880	chd1	95	81.763	ENSPEMG00000015939	Chd1	83	81.763	Peromyscus_maniculatus_bairdii
ENSGAFG00000019880	chd1	51	98.907	ENSPLAG00000006473	-	82	98.907	Poecilia_latipinna
ENSGAFG00000019880	chd1	97	92.338	ENSPREG00000004209	chd1	85	98.571	Poecilia_reticulata
ENSGAFG00000019880	chd1	85	82.562	ENSRNOG00000014434	Chd1	90	81.611	Rattus_norvegicus
ENSGAFG00000019880	chd1	88	93.617	ENSRBIG00000044325	CHD1	82	93.617	Rhinopithecus_bieti
ENSGAFG00000019880	chd1	93	81.846	ENSRROG00000001726	CHD1	83	81.846	Rhinopithecus_roxellana
ENSGAFG00000019880	chd1	73	79.948	ENSSFOG00015007161	chd1	86	83.788	Scleropages_formosus
ENSGAFG00000019880	chd1	85	93.395	ENSSDUG00000018314	chd1	89	93.395	Seriola_dumerili
ENSGAFG00000019880	chd1	55	96.275	ENSSLDG00000017244	chd1	84	96.275	Seriola_lalandi_dorsalis
ENSGAFG00000019880	chd1	80	94.540	ENSSPAG00000007024	chd1	93	93.702	Stegastes_partitus
ENSGAFG00000019880	chd1	88	83.103	ENSSSCG00000014177	CHD1	93	82.371	Sus_scrofa
ENSGAFG00000019880	chd1	92	79.911	ENSTRUG00000010282	chd1	86	78.293	Takifugu_rubripes
ENSGAFG00000019880	chd1	77	81.579	ENSTNIG00000007101	chd1	97	92.240	Tetraodon_nigroviridis
ENSGAFG00000019880	chd1	94	88.953	ENSXCOG00000017184	chd1	78	95.152	Xiphophorus_couchianus
ENSGAFG00000019880	chd1	86	94.620	ENSXMAG00000014538	chd1	99	94.620	Xiphophorus_maculatus