EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000020694 (Gene tree)
Gene ID: -
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 18187 bases
Position: chrNHOQ01000959.1:2331999-2350185
Accession: ZDB-GENE-030131-5181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000030712	Npa1	PF11707.8	7e-80	1	1
ENSGAFP00000030713	Npa1	PF11707.8	7.9e-75	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000031020	-	6531	-	ENSGAFP00000030712	2176 (aa)	-	-
ENSGAFT00000031021	-	6177	-	ENSGAFP00000030713	2058 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000020694's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000020694's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000020694	urb1	96	52.489	ENSG00000142207	URB1	98	42.552	Homo_sapiens
ENSGAFG00000020694	urb1	99	69.402	ENSAPOG00000020308	urb1	99	69.311	Acanthochromis_polyacanthus
ENSGAFG00000020694	urb1	98	52.604	ENSAMEG00000011998	URB1	94	52.604	Ailuropoda_melanoleuca
ENSGAFG00000020694	urb1	97	65.117	ENSACIG00000003248	urb1	97	65.069	Amphilophus_citrinellus
ENSGAFG00000020694	urb1	96	68.545	ENSAOCG00000010364	urb1	97	68.402	Amphiprion_ocellaris
ENSGAFG00000020694	urb1	98	67.173	ENSAPEG00000010758	urb1	99	65.544	Amphiprion_percula
ENSGAFG00000020694	urb1	98	68.135	ENSATEG00000011790	urb1	99	66.028	Anabas_testudineus
ENSGAFG00000020694	urb1	96	54.245	ENSAPLG00000012791	URB1	95	54.576	Anas_platyrhynchos
ENSGAFG00000020694	urb1	98	50.991	ENSACAG00000002817	URB1	94	51.095	Anolis_carolinensis
ENSGAFG00000020694	urb1	97	53.680	ENSANAG00000024617	URB1	94	53.426	Aotus_nancymaae
ENSGAFG00000020694	urb1	99	70.864	ENSACLG00000024865	urb1	96	70.864	Astatotilapia_calliptera
ENSGAFG00000020694	urb1	98	48.429	ENSAMXG00000012306	urb1	99	48.148	Astyanax_mexicanus
ENSGAFG00000020694	urb1	96	54.704	ENSBTAG00000012412	URB1	90	54.704	Bos_taurus
ENSGAFG00000020694	urb1	96	52.814	ENSCJAG00000009118	URB1	93	52.570	Callithrix_jacchus
ENSGAFG00000020694	urb1	98	52.416	ENSCAFG00000008892	URB1	94	52.416	Canis_familiaris
ENSGAFG00000020694	urb1	98	52.013	ENSCAFG00020025987	-	94	52.331	Canis_lupus_dingo
ENSGAFG00000020694	urb1	98	52.542	ENSCAFG00020025994	-	94	52.542	Canis_lupus_dingo
ENSGAFG00000020694	urb1	97	54.994	ENSCHIG00000015645	URB1	91	54.994	Capra_hircus
ENSGAFG00000020694	urb1	97	52.043	ENSTSYG00000013286	URB1	94	51.699	Carlito_syrichta
ENSGAFG00000020694	urb1	96	50.505	ENSCAPG00000015589	URB1	93	50.505	Cavia_aperea
ENSGAFG00000020694	urb1	98	52.733	ENSCPOG00000006748	URB1	95	52.733	Cavia_porcellus
ENSGAFG00000020694	urb1	97	53.254	ENSCCAG00000021299	URB1	99	43.084	Cebus_capucinus
ENSGAFG00000020694	urb1	98	43.016	ENSCATG00000042630	URB1	99	43.052	Cercocebus_atys
ENSGAFG00000020694	urb1	98	52.778	ENSCLAG00000005262	URB1	93	52.778	Chinchilla_lanigera
ENSGAFG00000020694	urb1	97	51.603	ENSCSAG00000009584	URB1	94	51.255	Chlorocebus_sabaeus
ENSGAFG00000020694	urb1	98	45.194	ENSCPBG00000006454	URB1	98	45.282	Chrysemys_picta_bellii
ENSGAFG00000020694	urb1	97	53.030	ENSCANG00000031088	URB1	99	43.223	Colobus_angolensis_palliatus
ENSGAFG00000020694	urb1	98	52.386	ENSCGRG00001010616	Urb1	95	52.068	Cricetulus_griseus_chok1gshd
ENSGAFG00000020694	urb1	97	52.935	ENSCGRG00000015840	Urb1	95	52.935	Cricetulus_griseus_crigri
ENSGAFG00000020694	urb1	99	66.809	ENSCSEG00000012616	urb1	95	66.809	Cynoglossus_semilaevis
ENSGAFG00000020694	urb1	95	78.646	ENSCVAG00000009076	urb1	97	78.996	Cyprinodon_variegatus
ENSGAFG00000020694	urb1	98	58.075	ENSDARG00000060308	urb1	99	51.525	Danio_rerio
ENSGAFG00000020694	urb1	86	52.447	ENSDNOG00000015586	URB1	97	52.447	Dasypus_novemcinctus
ENSGAFG00000020694	urb1	97	53.017	ENSDORG00000006735	Urb1	93	53.398	Dipodomys_ordii
ENSGAFG00000020694	urb1	91	52.099	ENSETEG00000009080	URB1	90	52.099	Echinops_telfairi
ENSGAFG00000020694	urb1	98	51.592	ENSEASG00005007711	URB1	94	51.592	Equus_asinus_asinus
ENSGAFG00000020694	urb1	98	52.442	ENSECAG00000013206	URB1	99	45.956	Equus_caballus
ENSGAFG00000020694	urb1	51	56.904	ENSEEUG00000003626	-	51	56.904	Erinaceus_europaeus
ENSGAFG00000020694	urb1	99	54.634	ENSELUG00000020516	urb1	96	60.671	Esox_lucius
ENSGAFG00000020694	urb1	98	52.489	ENSFCAG00000002177	URB1	94	52.814	Felis_catus
ENSGAFG00000020694	urb1	97	40.873	ENSFALG00000004636	URB1	99	40.873	Ficedula_albicollis
ENSGAFG00000020694	urb1	97	53.037	ENSFDAG00000007288	URB1	90	52.436	Fukomys_damarensis
ENSGAFG00000020694	urb1	99	73.196	ENSFHEG00000000202	urb1	99	74.924	Fundulus_heteroclitus
ENSGAFG00000020694	urb1	93	55.163	ENSGMOG00000001838	urb1	94	55.163	Gadus_morhua
ENSGAFG00000020694	urb1	98	44.515	ENSGALG00000015887	URB1	98	44.695	Gallus_gallus
ENSGAFG00000020694	urb1	98	70.109	ENSGACG00000011703	urb1	95	70.109	Gasterosteus_aculeatus
ENSGAFG00000020694	urb1	98	54.450	ENSGAGG00000022544	URB1	94	54.346	Gopherus_agassizii
ENSGAFG00000020694	urb1	96	52.973	ENSGGOG00000000285	URB1	98	42.673	Gorilla_gorilla
ENSGAFG00000020694	urb1	99	70.651	ENSHBUG00000001904	urb1	96	70.651	Haplochromis_burtoni
ENSGAFG00000020694	urb1	98	50.205	ENSHGLG00000004907	URB1	94	50.205	Heterocephalus_glaber_female
ENSGAFG00000020694	urb1	98	51.907	ENSHGLG00100010749	URB1	94	51.907	Heterocephalus_glaber_male
ENSGAFG00000020694	urb1	81	60.038	ENSHCOG00000018683	urb1	99	62.451	Hippocampus_comes
ENSGAFG00000020694	urb1	99	47.594	ENSIPUG00000014721	urb1	99	47.661	Ictalurus_punctatus
ENSGAFG00000020694	urb1	97	53.037	ENSSTOG00000004539	URB1	94	52.215	Ictidomys_tridecemlineatus
ENSGAFG00000020694	urb1	99	71.099	ENSKMAG00000006001	urb1	99	73.355	Kryptolebias_marmoratus
ENSGAFG00000020694	urb1	99	64.002	ENSLBEG00000027208	urb1	99	64.002	Labrus_bergylta
ENSGAFG00000020694	urb1	98	50.000	ENSLACG00000017059	URB1	94	50.000	Latimeria_chalumnae
ENSGAFG00000020694	urb1	99	50.765	ENSLOCG00000009190	urb1	99	50.656	Lepisosteus_oculatus
ENSGAFG00000020694	urb1	98	52.487	ENSLAFG00000010407	URB1	94	52.487	Loxodonta_africana
ENSGAFG00000020694	urb1	97	52.973	ENSMFAG00000034391	URB1	91	52.593	Macaca_fascicularis
ENSGAFG00000020694	urb1	97	52.973	ENSMMUG00000010295	URB1	99	42.895	Macaca_mulatta
ENSGAFG00000020694	urb1	97	51.351	ENSMNEG00000032981	URB1	99	42.189	Macaca_nemestrina
ENSGAFG00000020694	urb1	97	53.355	ENSMLEG00000041435	URB1	99	43.116	Mandrillus_leucophaeus
ENSGAFG00000020694	urb1	99	64.254	ENSMAMG00000011238	urb1	99	64.254	Mastacembelus_armatus
ENSGAFG00000020694	urb1	99	64.597	ENSMZEG00005011862	urb1	99	62.422	Maylandia_zebra
ENSGAFG00000020694	urb1	97	44.449	ENSMGAG00000014512	URB1	98	44.773	Meleagris_gallopavo
ENSGAFG00000020694	urb1	91	52.799	ENSMAUG00000010516	Urb1	99	52.219	Mesocricetus_auratus
ENSGAFG00000020694	urb1	97	52.017	ENSMICG00000016424	URB1	93	51.739	Microcebus_murinus
ENSGAFG00000020694	urb1	98	52.137	ENSMOCG00000012613	Urb1	96	52.137	Microtus_ochrogaster
ENSGAFG00000020694	urb1	98	52.095	ENSMODG00000021076	URB1	94	52.095	Monodelphis_domestica
ENSGAFG00000020694	urb1	98	66.254	ENSMALG00000017411	urb1	99	64.337	Monopterus_albus
ENSGAFG00000020694	urb1	99	52.693	MGP_CAROLIEiJ_G0020948	Urb1	95	52.670	Mus_caroli
ENSGAFG00000020694	urb1	98	52.376	ENSMUSG00000039929	Urb1	95	52.461	Mus_musculus
ENSGAFG00000020694	urb1	98	52.101	MGP_PahariEiJ_G0016653	Urb1	99	42.161	Mus_pahari
ENSGAFG00000020694	urb1	98	52.376	MGP_SPRETEiJ_G0021854	Urb1	97	52.356	Mus_spretus
ENSGAFG00000020694	urb1	98	52.072	ENSMPUG00000001123	URB1	94	52.072	Mustela_putorius_furo
ENSGAFG00000020694	urb1	98	52.448	ENSNGAG00000001905	Urb1	94	52.448	Nannospalax_galili
ENSGAFG00000020694	urb1	81	66.575	ENSNBRG00000001049	urb1	99	66.575	Neolamprologus_brichardi
ENSGAFG00000020694	urb1	94	52.706	ENSNLEG00000026872	URB1	91	52.142	Nomascus_leucogenys
ENSGAFG00000020694	urb1	90	56.667	ENSMEUG00000010828	URB1	95	40.794	Notamacropus_eugenii
ENSGAFG00000020694	urb1	97	50.374	ENSOPRG00000013482	URB1	93	50.374	Ochotona_princeps
ENSGAFG00000020694	urb1	97	53.122	ENSODEG00000002587	URB1	93	53.122	Octodon_degus
ENSGAFG00000020694	urb1	99	70.476	ENSONIG00000005599	urb1	99	67.109	Oreochromis_niloticus
ENSGAFG00000020694	urb1	96	53.189	ENSOCUG00000009381	URB1	98	43.559	Oryctolagus_cuniculus
ENSGAFG00000020694	urb1	99	69.872	ENSORLG00000003429	urb1	95	69.872	Oryzias_latipes
ENSGAFG00000020694	urb1	99	70.011	ENSORLG00020013785	urb1	95	70.484	Oryzias_latipes_hni
ENSGAFG00000020694	urb1	97	69.744	ENSORLG00015019421	urb1	97	67.625	Oryzias_latipes_hsok
ENSGAFG00000020694	urb1	83	67.125	ENSOMEG00000002094	urb1	99	68.856	Oryzias_melastigma
ENSGAFG00000020694	urb1	97	52.043	ENSOGAG00000017140	URB1	93	52.220	Otolemur_garnettii
ENSGAFG00000020694	urb1	89	55.124	ENSOARG00000013679	URB1	84	54.566	Ovis_aries
ENSGAFG00000020694	urb1	96	52.541	ENSPPAG00000003423	URB1	93	52.299	Pan_paniscus
ENSGAFG00000020694	urb1	98	52.973	ENSPPRG00000023131	URB1	94	52.973	Panthera_pardus
ENSGAFG00000020694	urb1	88	51.160	ENSPTIG00000016125	URB1	93	43.851	Panthera_tigris_altaica
ENSGAFG00000020694	urb1	96	52.324	ENSPTRG00000013852	URB1	93	52.086	Pan_troglodytes
ENSGAFG00000020694	urb1	97	53.247	ENSPANG00000021964	URB1	99	43.071	Papio_anubis
ENSGAFG00000020694	urb1	99	49.868	ENSPKIG00000003683	urb1	99	50.154	Paramormyrops_kingsleyae
ENSGAFG00000020694	urb1	98	52.335	ENSPEMG00000021205	Urb1	93	52.335	Peromyscus_maniculatus_bairdii
ENSGAFG00000020694	urb1	80	31.792	ENSPMAG00000009733	URB1	93	38.776	Petromyzon_marinus
ENSGAFG00000020694	urb1	97	51.717	ENSPCIG00000016350	URB1	96	51.717	Phascolarctos_cinereus
ENSGAFG00000020694	urb1	96	87.833	ENSPLAG00000004371	urb1	99	86.541	Poecilia_latipinna
ENSGAFG00000020694	urb1	99	89.175	ENSPMEG00000006634	urb1	99	87.539	Poecilia_mexicana
ENSGAFG00000020694	urb1	99	88.556	ENSPREG00000013453	urb1	99	87.055	Poecilia_reticulata
ENSGAFG00000020694	urb1	97	52.391	ENSPPYG00000011359	URB1	93	52.391	Pongo_abelii
ENSGAFG00000020694	urb1	94	50.863	ENSPCAG00000007430	URB1	88	50.863	Procavia_capensis
ENSGAFG00000020694	urb1	97	52.290	ENSPCOG00000022695	URB1	93	52.290	Propithecus_coquereli
ENSGAFG00000020694	urb1	98	51.706	ENSPVAG00000000889	URB1	94	51.706	Pteropus_vampyrus
ENSGAFG00000020694	urb1	99	64.907	ENSPNYG00000010589	urb1	99	64.653	Pundamilia_nyererei
ENSGAFG00000020694	urb1	98	48.265	ENSPNAG00000019324	urb1	99	48.322	Pygocentrus_nattereri
ENSGAFG00000020694	urb1	99	52.008	ENSRNOG00000002080	Urb1	99	42.694	Rattus_norvegicus
ENSGAFG00000020694	urb1	97	52.489	ENSRBIG00000033122	URB1	99	43.008	Rhinopithecus_bieti
ENSGAFG00000020694	urb1	98	52.489	ENSRROG00000040237	URB1	99	42.983	Rhinopithecus_roxellana
ENSGAFG00000020694	urb1	97	53.571	ENSSBOG00000027672	URB1	94	53.319	Saimiri_boliviensis_boliviensis
ENSGAFG00000020694	urb1	99	42.557	ENSSHAG00000005140	URB1	99	42.606	Sarcophilus_harrisii
ENSGAFG00000020694	urb1	94	51.781	ENSSFOG00015000339	urb1	98	60.275	Scleropages_formosus
ENSGAFG00000020694	urb1	98	70.670	ENSSMAG00000003782	urb1	99	66.064	Scophthalmus_maximus
ENSGAFG00000020694	urb1	99	73.163	ENSSDUG00000012313	urb1	99	69.248	Seriola_dumerili
ENSGAFG00000020694	urb1	99	68.894	ENSSLDG00000023179	urb1	99	68.894	Seriola_lalandi_dorsalis
ENSGAFG00000020694	urb1	98	52.984	ENSSPUG00000012447	URB1	94	52.984	Sphenodon_punctatus
ENSGAFG00000020694	urb1	99	73.348	ENSSPAG00000006325	urb1	99	69.501	Stegastes_partitus
ENSGAFG00000020694	urb1	96	51.884	ENSSSCG00000032024	URB1	92	51.884	Sus_scrofa
ENSGAFG00000020694	urb1	72	52.693	ENSTGUG00000013442	URB1	96	52.693	Taeniopygia_guttata
ENSGAFG00000020694	urb1	99	68.797	ENSTRUG00000009372	urb1	96	68.797	Takifugu_rubripes
ENSGAFG00000020694	urb1	98	68.261	ENSTNIG00000016277	urb1	95	68.478	Tetraodon_nigroviridis
ENSGAFG00000020694	urb1	70	47.273	ENSTBEG00000010044	URB1	68	47.273	Tupaia_belangeri
ENSGAFG00000020694	urb1	88	50.279	ENSTTRG00000007712	URB1	89	49.504	Tursiops_truncatus
ENSGAFG00000020694	urb1	97	52.391	ENSUAMG00000012231	URB1	93	52.391	Ursus_americanus
ENSGAFG00000020694	urb1	85	56.364	ENSUMAG00000017419	URB1	90	55.314	Ursus_maritimus
ENSGAFG00000020694	urb1	66	61.806	ENSVPAG00000001164	URB1	66	61.806	Vicugna_pacos
ENSGAFG00000020694	urb1	96	55.034	ENSVVUG00000000551	URB1	94	52.710	Vulpes_vulpes
ENSGAFG00000020694	urb1	98	52.807	ENSXETG00000009895	urb1	94	52.807	Xenopus_tropicalis
ENSGAFG00000020694	urb1	99	90.467	ENSXCOG00000005500	urb1	99	96.703	Xiphophorus_couchianus
ENSGAFG00000020694	urb1	97	96.703	ENSXMAG00000007253	urb1	99	96.703	Xiphophorus_maculatus