EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000020867 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 23726 bases
Position: chrNHOQ01001892.1:158613-182338
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000030952	Upf2	PF04050.14	3.1e-33	1	1
ENSGAFP00000030950	Upf2	PF04050.14	3.1e-33	1	1
ENSGAFP00000030950	MIF4G	PF02854.19	1.6e-80	1	3
ENSGAFP00000030950	MIF4G	PF02854.19	1.6e-80	2	3
ENSGAFP00000030950	MIF4G	PF02854.19	1.6e-80	3	3
ENSGAFP00000030952	MIF4G	PF02854.19	1.8e-80	1	3
ENSGAFP00000030952	MIF4G	PF02854.19	1.8e-80	2	3
ENSGAFP00000030952	MIF4G	PF02854.19	1.8e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000031263	UPF2-201	7160	-	ENSGAFP00000030950	1275 (aa)	-	-
ENSGAFT00000031265	UPF2-202	4415	-	ENSGAFP00000030952	1307 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000020867's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000020867's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000020867	UPF2	100	81.528	ENSG00000151461	UPF2	100	79.501	Homo_sapiens
ENSGAFG00000020867	UPF2	99	88.462	ENSAPOG00000015837	UPF2	100	87.991	Acanthochromis_polyacanthus
ENSGAFG00000020867	UPF2	100	82.059	ENSAMEG00000004586	UPF2	100	80.031	Ailuropoda_melanoleuca
ENSGAFG00000020867	UPF2	99	93.417	ENSACIG00000018078	UPF2	100	93.809	Amphilophus_citrinellus
ENSGAFG00000020867	UPF2	100	94.357	ENSAOCG00000016766	UPF2	100	94.357	Amphiprion_ocellaris
ENSGAFG00000020867	UPF2	100	94.436	ENSAPEG00000019084	UPF2	100	94.436	Amphiprion_percula
ENSGAFG00000020867	UPF2	100	93.271	ENSATEG00000021677	UPF2	99	93.662	Anabas_testudineus
ENSGAFG00000020867	UPF2	100	78.305	ENSAPLG00000010287	UPF2	90	83.290	Anas_platyrhynchos
ENSGAFG00000020867	UPF2	100	82.137	ENSACAG00000009259	UPF2	100	82.059	Anolis_carolinensis
ENSGAFG00000020867	UPF2	91	78.351	ENSANAG00000028451	UPF2	93	78.645	Aotus_nancymaae
ENSGAFG00000020867	UPF2	100	93.114	ENSACLG00000012696	UPF2	100	93.505	Astatotilapia_calliptera
ENSGAFG00000020867	UPF2	99	87.803	ENSAMXG00000013700	UPF2	99	85.770	Astyanax_mexicanus
ENSGAFG00000020867	UPF2	100	81.903	ENSBTAG00000000288	UPF2	100	79.797	Bos_taurus
ENSGAFG00000020867	UPF2	100	81.513	ENSCJAG00000020685	UPF2	100	79.641	Callithrix_jacchus
ENSGAFG00000020867	UPF2	100	82.059	ENSCAFG00000004839	UPF2	100	80.031	Canis_familiaris
ENSGAFG00000020867	UPF2	95	86.869	ENSCAFG00020005882	UPF2	100	77.891	Canis_lupus_dingo
ENSGAFG00000020867	UPF2	100	81.903	ENSCHIG00000020359	UPF2	100	79.875	Capra_hircus
ENSGAFG00000020867	UPF2	100	81.747	ENSTSYG00000000935	UPF2	97	85.876	Carlito_syrichta
ENSGAFG00000020867	UPF2	91	73.995	ENSCAPG00000016658	UPF2	95	73.909	Cavia_aperea
ENSGAFG00000020867	UPF2	99	79.088	ENSCPOG00000008809	UPF2	92	82.338	Cavia_porcellus
ENSGAFG00000020867	UPF2	96	82.546	ENSCCAG00000035991	UPF2	100	83.573	Cebus_capucinus
ENSGAFG00000020867	UPF2	100	81.606	ENSCATG00000032679	UPF2	100	79.579	Cercocebus_atys
ENSGAFG00000020867	UPF2	100	81.030	ENSCLAG00000011434	UPF2	100	80.172	Chinchilla_lanigera
ENSGAFG00000020867	UPF2	100	81.606	ENSCSAG00000013372	UPF2	92	84.655	Chlorocebus_sabaeus
ENSGAFG00000020867	UPF2	79	88.222	ENSCHOG00000000422	UPF2	79	92.112	Choloepus_hoffmanni
ENSGAFG00000020867	UPF2	99	80.673	ENSCPBG00000027823	UPF2	100	80.986	Chrysemys_picta_bellii
ENSGAFG00000020867	UPF2	79	49.362	ENSCSAVG00000007772	-	99	48.381	Ciona_savignyi
ENSGAFG00000020867	UPF2	99	76.452	ENSCANG00000040396	UPF2	100	74.727	Colobus_angolensis_palliatus
ENSGAFG00000020867	UPF2	100	81.187	ENSCGRG00001019347	Upf2	100	79.391	Cricetulus_griseus_chok1gshd
ENSGAFG00000020867	UPF2	100	81.187	ENSCGRG00000017993	Upf2	100	79.391	Cricetulus_griseus_crigri
ENSGAFG00000020867	UPF2	99	85.377	ENSCSEG00000003520	UPF2	99	84.483	Cynoglossus_semilaevis
ENSGAFG00000020867	UPF2	99	95.893	ENSCVAG00000006167	UPF2	100	95.893	Cyprinodon_variegatus
ENSGAFG00000020867	UPF2	100	81.825	ENSDNOG00000018160	UPF2	100	79.953	Dasypus_novemcinctus
ENSGAFG00000020867	UPF2	100	81.123	ENSDORG00000002478	Upf2	100	79.407	Dipodomys_ordii
ENSGAFG00000020867	UPF2	89	35.814	FBgn0029992	Upf2	95	35.390	Drosophila_melanogaster
ENSGAFG00000020867	UPF2	73	91.971	ENSETEG00000011583	-	62	91.667	Echinops_telfairi
ENSGAFG00000020867	UPF2	64	71.523	ENSEBUG00000012448	-	93	67.814	Eptatretus_burgeri
ENSGAFG00000020867	UPF2	100	81.109	ENSEASG00005019274	UPF2	100	80.328	Equus_asinus_asinus
ENSGAFG00000020867	UPF2	100	81.109	ENSECAG00000017022	UPF2	100	80.328	Equus_caballus
ENSGAFG00000020867	UPF2	82	74.528	ENSEEUG00000007819	UPF2	69	84.772	Erinaceus_europaeus
ENSGAFG00000020867	UPF2	99	87.276	ENSELUG00000012014	UPF2	100	86.973	Esox_lucius
ENSGAFG00000020867	UPF2	100	85.792	ENSFCAG00000005785	UPF2	100	80.109	Felis_catus
ENSGAFG00000020867	UPF2	100	83.229	ENSFALG00000001889	UPF2	98	83.385	Ficedula_albicollis
ENSGAFG00000020867	UPF2	100	80.406	ENSFDAG00000014348	UPF2	100	79.859	Fukomys_damarensis
ENSGAFG00000020867	UPF2	99	96.126	ENSFHEG00000009826	UPF2	100	95.731	Fundulus_heteroclitus
ENSGAFG00000020867	UPF2	91	88.266	ENSGMOG00000005557	UPF2	100	85.569	Gadus_morhua
ENSGAFG00000020867	UPF2	100	83.087	ENSGALG00000033772	UPF2	100	82.893	Gallus_gallus
ENSGAFG00000020867	UPF2	99	90.461	ENSGACG00000001080	UPF2	100	90.618	Gasterosteus_aculeatus
ENSGAFG00000020867	UPF2	100	81.747	ENSGAGG00000002700	UPF2	100	81.981	Gopherus_agassizii
ENSGAFG00000020867	UPF2	100	81.528	ENSGGOG00000001479	UPF2	100	79.501	Gorilla_gorilla
ENSGAFG00000020867	UPF2	100	92.958	ENSHBUG00000004249	UPF2	100	93.495	Haplochromis_burtoni
ENSGAFG00000020867	UPF2	99	71.931	ENSHGLG00000003822	-	99	72.166	Heterocephalus_glaber_female
ENSGAFG00000020867	UPF2	100	80.718	ENSHGLG00000015176	-	100	79.859	Heterocephalus_glaber_female
ENSGAFG00000020867	UPF2	99	78.342	ENSHGLG00100010036	UPF2	95	80.708	Heterocephalus_glaber_male
ENSGAFG00000020867	UPF2	100	89.461	ENSHCOG00000004025	UPF2	99	89.461	Hippocampus_comes
ENSGAFG00000020867	UPF2	100	86.885	ENSIPUG00000015524	UPF2	100	86.573	Ictalurus_punctatus
ENSGAFG00000020867	UPF2	100	81.669	ENSSTOG00000013075	UPF2	100	79.875	Ictidomys_tridecemlineatus
ENSGAFG00000020867	UPF2	100	78.298	ENSJJAG00000004913	Upf2	100	78.923	Jaculus_jaculus
ENSGAFG00000020867	UPF2	99	93.218	ENSKMAG00000001071	UPF2	100	93.297	Kryptolebias_marmoratus
ENSGAFG00000020867	UPF2	80	89.030	ENSLBEG00000000728	-	94	89.463	Labrus_bergylta
ENSGAFG00000020867	UPF2	100	91.706	ENSLBEG00000016394	-	99	92.488	Labrus_bergylta
ENSGAFG00000020867	UPF2	91	77.226	ENSLACG00000015945	UPF2	99	75.526	Latimeria_chalumnae
ENSGAFG00000020867	UPF2	99	87.165	ENSLOCG00000015698	UPF2	100	86.772	Lepisosteus_oculatus
ENSGAFG00000020867	UPF2	100	81.606	ENSMFAG00000043865	UPF2	92	84.655	Macaca_fascicularis
ENSGAFG00000020867	UPF2	100	81.606	ENSMMUG00000008241	UPF2	92	84.655	Macaca_mulatta
ENSGAFG00000020867	UPF2	80	81.969	ENSMNEG00000008062	UPF2	89	85.371	Macaca_nemestrina
ENSGAFG00000020867	UPF2	99	79.563	ENSMLEG00000036120	UPF2	100	77.440	Mandrillus_leucophaeus
ENSGAFG00000020867	UPF2	100	91.080	ENSMAMG00000018276	UPF2	100	93.271	Mastacembelus_armatus
ENSGAFG00000020867	UPF2	100	93.114	ENSMZEG00005021595	UPF2	100	93.505	Maylandia_zebra
ENSGAFG00000020867	UPF2	99	82.316	ENSMGAG00000004573	UPF2	99	82.344	Meleagris_gallopavo
ENSGAFG00000020867	UPF2	100	79.157	ENSMAUG00000016512	Upf2	100	77.361	Mesocricetus_auratus
ENSGAFG00000020867	UPF2	99	79.453	ENSMICG00000001716	UPF2	100	76.953	Microcebus_murinus
ENSGAFG00000020867	UPF2	100	80.391	ENSMOCG00000008263	Upf2	100	79.766	Microtus_ochrogaster
ENSGAFG00000020867	UPF2	99	88.776	ENSMMOG00000006528	UPF2	100	88.619	Mola_mola
ENSGAFG00000020867	UPF2	100	80.031	ENSMODG00000016794	UPF2	92	84.983	Monodelphis_domestica
ENSGAFG00000020867	UPF2	99	91.837	ENSMALG00000002663	UPF2	100	91.915	Monopterus_albus
ENSGAFG00000020867	UPF2	100	80.952	MGP_CAROLIEiJ_G0023157	Upf2	99	84.087	Mus_caroli
ENSGAFG00000020867	UPF2	100	81.109	ENSMUSG00000043241	Upf2	99	83.396	Mus_musculus
ENSGAFG00000020867	UPF2	100	81.343	MGP_PahariEiJ_G0019217	Upf2	100	83.208	Mus_pahari
ENSGAFG00000020867	UPF2	100	81.343	MGP_SPRETEiJ_G0024075	Upf2	100	83.396	Mus_spretus
ENSGAFG00000020867	UPF2	100	81.981	ENSMPUG00000001064	UPF2	100	80.109	Mustela_putorius_furo
ENSGAFG00000020867	UPF2	99	81.123	ENSMLUG00000000228	UPF2	100	79.251	Myotis_lucifugus
ENSGAFG00000020867	UPF2	100	93.114	ENSNBRG00000013629	UPF2	100	93.505	Neolamprologus_brichardi
ENSGAFG00000020867	UPF2	100	81.528	ENSNLEG00000012058	UPF2	92	84.569	Nomascus_leucogenys
ENSGAFG00000020867	UPF2	72	92.254	ENSOPRG00000006801	-	73	92.254	Ochotona_princeps
ENSGAFG00000020867	UPF2	100	80.607	ENSODEG00000001290	UPF2	100	79.829	Octodon_degus
ENSGAFG00000020867	UPF2	100	92.801	ENSONIG00000017991	UPF2	100	93.192	Oreochromis_niloticus
ENSGAFG00000020867	UPF2	99	79.533	ENSOCUG00000006230	UPF2	100	79.689	Oryctolagus_cuniculus
ENSGAFG00000020867	UPF2	100	91.229	ENSORLG00000017189	UPF2	100	91.386	Oryzias_latipes
ENSGAFG00000020867	UPF2	100	91.308	ENSORLG00020005969	UPF2	100	91.464	Oryzias_latipes_hni
ENSGAFG00000020867	UPF2	100	91.308	ENSORLG00015005713	UPF2	100	91.464	Oryzias_latipes_hsok
ENSGAFG00000020867	UPF2	99	88.305	ENSOMEG00000023420	UPF2	99	87.606	Oryzias_melastigma
ENSGAFG00000020867	UPF2	100	81.825	ENSOGAG00000005796	UPF2	100	79.563	Otolemur_garnettii
ENSGAFG00000020867	UPF2	100	81.776	ENSOARG00000014587	UPF2	100	79.751	Ovis_aries
ENSGAFG00000020867	UPF2	99	79.017	ENSPPAG00000037953	UPF2	100	76.893	Pan_paniscus
ENSGAFG00000020867	UPF2	100	82.137	ENSPPRG00000000690	UPF2	100	80.109	Panthera_pardus
ENSGAFG00000020867	UPF2	100	82.137	ENSPTIG00000008867	UPF2	100	80.109	Panthera_tigris_altaica
ENSGAFG00000020867	UPF2	100	81.528	ENSPTRG00000002291	UPF2	100	79.501	Pan_troglodytes
ENSGAFG00000020867	UPF2	100	81.606	ENSPANG00000023399	UPF2	100	79.579	Papio_anubis
ENSGAFG00000020867	UPF2	100	87.188	ENSPKIG00000025502	UPF2	100	85.781	Paramormyrops_kingsleyae
ENSGAFG00000020867	UPF2	59	80.632	ENSPSIG00000015158	UPF2	95	80.105	Pelodiscus_sinensis
ENSGAFG00000020867	UPF2	99	88.688	ENSPMGG00000005259	UPF2	100	88.452	Periophthalmus_magnuspinnatus
ENSGAFG00000020867	UPF2	93	74.063	ENSPEMG00000015731	Upf2	90	82.700	Peromyscus_maniculatus_bairdii
ENSGAFG00000020867	UPF2	100	81.868	ENSPCIG00000006656	UPF2	100	80.156	Phascolarctos_cinereus
ENSGAFG00000020867	UPF2	100	98.431	ENSPFOG00000017118	UPF2	100	98.431	Poecilia_formosa
ENSGAFG00000020867	UPF2	100	98.546	ENSPLAG00000005094	UPF2	100	98.546	Poecilia_latipinna
ENSGAFG00000020867	UPF2	100	98.470	ENSPMEG00000017009	UPF2	100	98.470	Poecilia_mexicana
ENSGAFG00000020867	UPF2	99	97.172	ENSPREG00000021880	UPF2	100	97.172	Poecilia_reticulata
ENSGAFG00000020867	UPF2	66	84.460	ENSPPYG00000002089	-	100	84.935	Pongo_abelii
ENSGAFG00000020867	UPF2	100	69.267	ENSPCAG00000000684	UPF2	86	74.818	Procavia_capensis
ENSGAFG00000020867	UPF2	99	78.906	ENSPCOG00000021656	UPF2	100	77.500	Propithecus_coquereli
ENSGAFG00000020867	UPF2	100	75.526	ENSPVAG00000017286	UPF2	100	73.422	Pteropus_vampyrus
ENSGAFG00000020867	UPF2	99	90.517	ENSPNYG00000017096	UPF2	100	90.909	Pundamilia_nyererei
ENSGAFG00000020867	UPF2	100	88.212	ENSPNAG00000009357	UPF2	100	88.290	Pygocentrus_nattereri
ENSGAFG00000020867	UPF2	99	77.108	ENSRNOG00000023593	Upf2	100	93.333	Rattus_norvegicus
ENSGAFG00000020867	UPF2	99	80.156	ENSRBIG00000037780	UPF2	100	78.186	Rhinopithecus_bieti
ENSGAFG00000020867	UPF2	100	81.138	ENSRROG00000043547	UPF2	100	79.267	Rhinopithecus_roxellana
ENSGAFG00000020867	UPF2	100	81.045	ENSSBOG00000020012	UPF2	100	79.329	Saimiri_boliviensis_boliviensis
ENSGAFG00000020867	UPF2	100	85.948	ENSSFOG00015023788	upf2	100	85.792	Scleropages_formosus
ENSGAFG00000020867	UPF2	90	91.319	ENSSMAG00000007637	UPF2	100	90.591	Scophthalmus_maximus
ENSGAFG00000020867	UPF2	100	94.044	ENSSDUG00000017244	UPF2	99	94.044	Seriola_dumerili
ENSGAFG00000020867	UPF2	99	90.502	ENSSLDG00000016866	UPF2	100	90.267	Seriola_lalandi_dorsalis
ENSGAFG00000020867	UPF2	100	79.017	ENSSARG00000008615	UPF2	100	81.279	Sorex_araneus
ENSGAFG00000020867	UPF2	99	79.829	ENSSPUG00000014544	UPF2	99	79.984	Sphenodon_punctatus
ENSGAFG00000020867	UPF2	68	84.229	ENSSSCG00000011117	-	99	84.571	Sus_scrofa
ENSGAFG00000020867	UPF2	99	83.034	ENSTGUG00000002163	-	100	83.190	Taeniopygia_guttata
ENSGAFG00000020867	UPF2	100	90.923	ENSTRUG00000007519	UPF2	99	91.236	Takifugu_rubripes
ENSGAFG00000020867	UPF2	100	87.812	ENSTNIG00000004453	UPF2	100	88.047	Tetraodon_nigroviridis
ENSGAFG00000020867	UPF2	93	71.956	ENSTBEG00000012679	UPF2	93	72.124	Tupaia_belangeri
ENSGAFG00000020867	UPF2	100	81.030	ENSTTRG00000016388	UPF2	100	80.094	Tursiops_truncatus
ENSGAFG00000020867	UPF2	87	93.258	ENSUAMG00000023560	UPF2	98	93.258	Ursus_americanus
ENSGAFG00000020867	UPF2	100	82.059	ENSUMAG00000012953	UPF2	95	79.984	Ursus_maritimus
ENSGAFG00000020867	UPF2	82	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSGAFG00000020867	UPF2	100	82.059	ENSVVUG00000006166	UPF2	100	80.031	Vulpes_vulpes
ENSGAFG00000020867	UPF2	100	79.283	ENSXETG00000033103	UPF2	91	83.549	Xenopus_tropicalis
ENSGAFG00000020867	UPF2	99	98.743	ENSXCOG00000011604	UPF2	100	98.743	Xiphophorus_couchianus
ENSGAFG00000020867	UPF2	100	99.005	ENSXMAG00000017209	UPF2	100	99.005	Xiphophorus_maculatus