EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGAFG00000020953 (Gene tree)
Gene ID
-
Gene Symbol
RPA1 (1 of many)
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A1
Gene Type
protein_coding
Species
Gambusia_affinis
Status
putative
Strand
Plus strand
Length
39461 bases
Position
chrNHOQ01001678.1:12543802-12583262
Accession
10289
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGAFP00000031079tRNA_anti-codonPF01336.252e-1211
ENSGAFP00000031078tRNA_anti-codonPF01336.252.3e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGAFT00000031394RPA1 (1 of many)-2022513-ENSGAFP00000031079619 (aa)--
ENSGAFT00000031393RPA1 (1 of many)-2012621-ENSGAFP00000031078655 (aa)--
Gene Model
Click here to download ENSGAFG00000020953's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000020953's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGAFG00000020953RPA19958.282ENSGAFG00000012916rpa19269.495
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGAFG00000020953RPA19973.593ENSAPOG00000019409RPA19974.203Acanthochromis_polyacanthus
ENSGAFG00000020953RPA19959.389ENSAPOG00000011658rpa19471.167Acanthochromis_polyacanthus
ENSGAFG00000020953RPA19853.775ENSAMEG00000007706RPA19853.775Ailuropoda_melanoleuca
ENSGAFG00000020953RPA19674.286ENSACIG00000012881RPA19974.286Amphilophus_citrinellus
ENSGAFG00000020953RPA19653.191ENSACIG00000007277rpa19953.548Amphilophus_citrinellus
ENSGAFG00000020953RPA19976.621ENSAOCG00000009003RPA19976.621Amphiprion_ocellaris
ENSGAFG00000020953RPA19959.695ENSAOCG00000023376rpa19959.356Amphiprion_ocellaris
ENSGAFG00000020953RPA19978.431ENSAPEG00000019132RPA19978.431Amphiprion_percula
ENSGAFG00000020953RPA19959.237ENSAPEG00000008634rpa19959.237Amphiprion_percula
ENSGAFG00000020953RPA18070.227ENSATEG00000022024rpa19270.227Anabas_testudineus
ENSGAFG00000020953RPA19975.264ENSATEG00000006443RPA19974.811Anabas_testudineus
ENSGAFG00000020953RPA19855.963ENSAPLG00000012442RPA19255.963Anas_platyrhynchos
ENSGAFG00000020953RPA18757.174ENSACAG00000014490RPA19949.774Anolis_carolinensis
ENSGAFG00000020953RPA19754.930ENSANAG00000023456RPA19855.399Aotus_nancymaae
ENSGAFG00000020953RPA110075.152ENSACLG00000005223RPA110075.152Astatotilapia_calliptera
ENSGAFG00000020953RPA19460.714ENSACLG00000006640rpa19960.065Astatotilapia_calliptera
ENSGAFG00000020953RPA19958.788ENSAMXG00000008418rpa19769.977Astyanax_mexicanus
ENSGAFG00000020953RPA19954.394ENSBTAG00000009711RPA19954.628Bos_taurus
ENSGAFG00000020953RPA17330.228WBGene00017546rpa-17330.228Caenorhabditis_elegans
ENSGAFG00000020953RPA19953.951ENSCJAG00000001848RPA19954.160Callithrix_jacchus
ENSGAFG00000020953RPA19954.394ENSCAFG00000019249RPA19954.614Canis_familiaris
ENSGAFG00000020953RPA19954.394ENSCAFG00020009847RPA19954.614Canis_lupus_dingo
ENSGAFG00000020953RPA19954.103ENSCHIG00000026308RPA19954.407Capra_hircus
ENSGAFG00000020953RPA19953.799ENSTSYG00000003482-9953.495Carlito_syrichta
ENSGAFG00000020953RPA19954.407ENSCPOG00000000035RPA19954.407Cavia_porcellus
ENSGAFG00000020953RPA19947.910ENSCCAG00000010981RPA19948.160Cebus_capucinus
ENSGAFG00000020953RPA19955.455ENSCLAG00000005185-9955.319Chinchilla_lanigera
ENSGAFG00000020953RPA19952.200ENSCLAG00000015045-9952.055Chinchilla_lanigera
ENSGAFG00000020953RPA19947.284ENSCSAG00000013833RPA19947.143Chlorocebus_sabaeus
ENSGAFG00000020953RPA19654.818ENSCHOG00000013540-9953.555Choloepus_hoffmanni
ENSGAFG00000020953RPA16664.450ENSCHOG00000009454-9964.450Choloepus_hoffmanni
ENSGAFG00000020953RPA19954.766ENSCPBG00000020377RPA19955.032Chrysemys_picta_bellii
ENSGAFG00000020953RPA19939.297ENSCING00000023482-9939.297Ciona_intestinalis
ENSGAFG00000020953RPA16863.535ENSCANG00000030911RPA19763.535Colobus_angolensis_palliatus
ENSGAFG00000020953RPA19954.573ENSCGRG00001008197Rpa19954.116Cricetulus_griseus_chok1gshd
ENSGAFG00000020953RPA16664.450ENSCGRG00000000582Rpa18564.450Cricetulus_griseus_crigri
ENSGAFG00000020953RPA19965.138ENSCSEG00000012726RPA19965.139Cynoglossus_semilaevis
ENSGAFG00000020953RPA19957.686ENSCSEG00000013066rpa19957.252Cynoglossus_semilaevis
ENSGAFG00000020953RPA19958.600ENSCVAG00000019431rpa19959.641Cyprinodon_variegatus
ENSGAFG00000020953RPA19682.016ENSCVAG00000013446-9682.016Cyprinodon_variegatus
ENSGAFG00000020953RPA19959.237ENSDARG00000003938rpa19959.389Danio_rerio
ENSGAFG00000020953RPA19954.141ENSDNOG00000017218RPA19953.506Dasypus_novemcinctus
ENSGAFG00000020953RPA19954.848ENSDORG00000006199Rpa19954.545Dipodomys_ordii
ENSGAFG00000020953RPA18544.573FBgn0010173RpA-709144.573Drosophila_melanogaster
ENSGAFG00000020953RPA18463.918ENSETEG00000017608RPA18263.918Echinops_telfairi
ENSGAFG00000020953RPA19855.247ENSEASG00005009372RPA19464.465Equus_asinus_asinus
ENSGAFG00000020953RPA19955.371ENSECAG00000023886RPA19954.669Equus_caballus
ENSGAFG00000020953RPA16464.354ENSEEUG00000002186-6864.354Erinaceus_europaeus
ENSGAFG00000020953RPA16470.983ENSELUG00000006136RPA19370.983Esox_lucius
ENSGAFG00000020953RPA19959.756ENSELUG00000021071rpa19959.604Esox_lucius
ENSGAFG00000020953RPA19954.780ENSFCAG00000006306RPA19954.103Felis_catus
ENSGAFG00000020953RPA110052.648ENSFALG00000006575RPA19952.648Ficedula_albicollis
ENSGAFG00000020953RPA110054.932ENSFDAG00000007720RPA110054.532Fukomys_damarensis
ENSGAFG00000020953RPA19957.774ENSFHEG00000003580rpa19957.887Fundulus_heteroclitus
ENSGAFG00000020953RPA18468.650ENSGMOG00000010382rpa19668.650Gadus_morhua
ENSGAFG00000020953RPA110053.263ENSGALG00000003072RPA19953.263Gallus_gallus
ENSGAFG00000020953RPA19956.970ENSGACG00000010856rpa19469.767Gasterosteus_aculeatus
ENSGAFG00000020953RPA19954.766ENSGAGG00000013611RPA19954.394Gopherus_agassizii
ENSGAFG00000020953RPA18964.172ENSGGOG00000014186RPA19664.172Gorilla_gorilla
ENSGAFG00000020953RPA19662.085ENSHBUG00000009348RPA19962.085Haplochromis_burtoni
ENSGAFG00000020953RPA19958.994ENSHBUG00000017773rpa19958.436Haplochromis_burtoni
ENSGAFG00000020953RPA19955.167ENSHGLG00000008846RPA110054.204Heterocephalus_glaber_female
ENSGAFG00000020953RPA19955.167ENSHGLG00100017755-10054.204Heterocephalus_glaber_male
ENSGAFG00000020953RPA19950.608ENSHGLG00100000799-9950.456Heterocephalus_glaber_male
ENSGAFG00000020953RPA19946.423ENSHGLG00100002005-9945.865Heterocephalus_glaber_male
ENSGAFG00000020953RPA18465.831ENSHCOG00000001401rpa19955.589Hippocampus_comes
ENSGAFG00000020953RPA19452.743ENSHCOG00000000351RPA19855.079Hippocampus_comes
ENSGAFG00000020953RPA19959.422ENSIPUG00000004400rpa19959.604Ictalurus_punctatus
ENSGAFG00000020953RPA19255.212ENSSTOG00000022475RPA19454.173Ictidomys_tridecemlineatus
ENSGAFG00000020953RPA19656.329ENSJJAG00000000876Rpa19856.556Jaculus_jaculus
ENSGAFG00000020953RPA19956.687ENSKMAG00000005605rpa19955.689Kryptolebias_marmoratus
ENSGAFG00000020953RPA110073.252ENSKMAG00000000234RPA110073.252Kryptolebias_marmoratus
ENSGAFG00000020953RPA19969.263ENSLBEG00000002281RPA19968.980Labrus_bergylta
ENSGAFG00000020953RPA19957.580ENSLBEG00000021604rpa19957.580Labrus_bergylta
ENSGAFG00000020953RPA17255.852ENSLACG00000007210RPA19855.852Latimeria_chalumnae
ENSGAFG00000020953RPA19958.689ENSLOCG00000006397rpa19958.689Lepisosteus_oculatus
ENSGAFG00000020953RPA19853.963ENSLAFG00000015354RPA19853.659Loxodonta_africana
ENSGAFG00000020953RPA18852.888ENSMFAG00000036138-10052.688Macaca_fascicularis
ENSGAFG00000020953RPA19950.076ENSMMUG00000002442-9950.076Macaca_mulatta
ENSGAFG00000020953RPA19853.917ENSMMUG00000011604-9953.740Macaca_mulatta
ENSGAFG00000020953RPA19952.950ENSMNEG00000031632-9952.782Macaca_nemestrina
ENSGAFG00000020953RPA18655.090ENSMNEG00000029837-9955.090Macaca_nemestrina
ENSGAFG00000020953RPA19751.719ENSMLEG00000038768-9851.398Mandrillus_leucophaeus
ENSGAFG00000020953RPA19976.190ENSMAMG00000020097RPA19976.190Mastacembelus_armatus
ENSGAFG00000020953RPA19958.168ENSMAMG00000017993rpa19958.168Mastacembelus_armatus
ENSGAFG00000020953RPA110075.152ENSMZEG00005024731RPA110075.152Maylandia_zebra
ENSGAFG00000020953RPA19958.994ENSMZEG00005007551rpa19958.671Maylandia_zebra
ENSGAFG00000020953RPA19953.374ENSMGAG00000005315RPA19853.221Meleagris_gallopavo
ENSGAFG00000020953RPA19655.521ENSMAUG00000010474Rpa19855.660Mesocricetus_auratus
ENSGAFG00000020953RPA19953.373ENSMICG00000012867RPA19953.373Microcebus_murinus
ENSGAFG00000020953RPA19954.186ENSMOCG00000013019Rpa19953.625Microtus_ochrogaster
ENSGAFG00000020953RPA19868.210ENSMMOG00000010868RPA19877.324Mola_mola
ENSGAFG00000020953RPA19658.176ENSMMOG00000014292rpa19957.729Mola_mola
ENSGAFG00000020953RPA19954.299ENSMODG00000010549RPA19954.299Monodelphis_domestica
ENSGAFG00000020953RPA19958.193ENSMALG00000011453rpa19469.773Monopterus_albus
ENSGAFG00000020953RPA19968.759ENSMALG00000001208RPA19968.555Monopterus_albus
ENSGAFG00000020953RPA19954.726MGP_CAROLIEiJ_G0016734Rpa19954.726Mus_caroli
ENSGAFG00000020953RPA19954.033ENSMUSG00000000751Rpa19953.963Mus_musculus
ENSGAFG00000020953RPA19955.015MGP_PahariEiJ_G0017871Rpa19955.030Mus_pahari
ENSGAFG00000020953RPA19954.116MGP_SPRETEiJ_G0017577Rpa19954.116Mus_spretus
ENSGAFG00000020953RPA19953.566ENSMPUG00000013119RPA19953.343Mustela_putorius_furo
ENSGAFG00000020953RPA19954.066ENSMLUG00000006113RPA19953.544Myotis_lucifugus
ENSGAFG00000020953RPA19755.231ENSNGAG00000004522Rpa19655.231Nannospalax_galili
ENSGAFG00000020953RPA19560.258ENSNBRG00000020595rpa19959.612Neolamprologus_brichardi
ENSGAFG00000020953RPA19967.945ENSNBRG00000009672RPA19768.203Neolamprologus_brichardi
ENSGAFG00000020953RPA19954.711ENSNLEG00000017149RPA19954.381Nomascus_leucogenys
ENSGAFG00000020953RPA18762.295ENSMEUG00000006714RPA18760.417Notamacropus_eugenii
ENSGAFG00000020953RPA19655.312ENSODEG00000009038RPA19655.134Octodon_degus
ENSGAFG00000020953RPA19958.459ENSONIG00000013135rpa19959.847Oreochromis_niloticus
ENSGAFG00000020953RPA19854.869ENSOANG00000010880RPA19955.077Ornithorhynchus_anatinus
ENSGAFG00000020953RPA19951.959ENSOCUG00000001504RPA19952.283Oryctolagus_cuniculus
ENSGAFG00000020953RPA19958.626ENSORLG00000004856rpa19958.652Oryzias_latipes
ENSGAFG00000020953RPA19974.584ENSORLG00000003368RPA19973.828Oryzias_latipes
ENSGAFG00000020953RPA19974.179ENSORLG00020015284RPA19973.433Oryzias_latipes_hni
ENSGAFG00000020953RPA19958.626ENSORLG00020008980rpa19958.652Oryzias_latipes_hni
ENSGAFG00000020953RPA19958.626ENSORLG00015013982rpa19958.652Oryzias_latipes_hsok
ENSGAFG00000020953RPA19974.125ENSORLG00015020383RPA19973.364Oryzias_latipes_hsok
ENSGAFG00000020953RPA16681.797ENSORLG00015005867-9981.797Oryzias_latipes_hsok
ENSGAFG00000020953RPA19956.250ENSOMEG00000004704rpa19956.202Oryzias_melastigma
ENSGAFG00000020953RPA19970.615ENSOMEG00000011040RPA19871.497Oryzias_melastigma
ENSGAFG00000020953RPA17765.730ENSOGAG00000029379-9865.730Otolemur_garnettii
ENSGAFG00000020953RPA19955.204ENSOGAG00000005581-9954.819Otolemur_garnettii
ENSGAFG00000020953RPA19953.951ENSOARG00000014479RPA19954.255Ovis_aries
ENSGAFG00000020953RPA19955.083ENSPPAG00000039680RPA19954.932Pan_paniscus
ENSGAFG00000020953RPA19954.932ENSPPRG00000011807RPA19954.407Panthera_pardus
ENSGAFG00000020953RPA19954.628ENSPTIG00000007898RPA19954.103Panthera_tigris_altaica
ENSGAFG00000020953RPA19955.167ENSPTRG00000008539RPA19954.834Pan_troglodytes
ENSGAFG00000020953RPA19953.927ENSPANG00000024592RPA19953.754Papio_anubis
ENSGAFG00000020953RPA19556.825ENSPKIG00000008053rpa19458.080Paramormyrops_kingsleyae
ENSGAFG00000020953RPA19853.858ENSPSIG00000015617RPA19954.109Pelodiscus_sinensis
ENSGAFG00000020953RPA19961.991ENSPMGG00000000543RPA19966.230Periophthalmus_magnuspinnatus
ENSGAFG00000020953RPA19659.141ENSPMGG00000011589rpa19859.141Periophthalmus_magnuspinnatus
ENSGAFG00000020953RPA19954.642ENSPEMG00000021061Rpa19954.780Peromyscus_maniculatus_bairdii
ENSGAFG00000020953RPA19953.799ENSPCIG00000019049RPA19953.951Phascolarctos_cinereus
ENSGAFG00000020953RPA19957.492ENSPFOG00000003987rpa19958.040Poecilia_formosa
ENSGAFG00000020953RPA19958.193ENSPLAG00000004984rpa19958.193Poecilia_latipinna
ENSGAFG00000020953RPA19593.569ENSPLAG00000008844-9793.569Poecilia_latipinna
ENSGAFG00000020953RPA19594.373ENSPMEG00000003627-9794.373Poecilia_mexicana
ENSGAFG00000020953RPA19957.447ENSPMEG00000020602rpa19169.037Poecilia_mexicana
ENSGAFG00000020953RPA19652.707ENSPREG00000010174rpa19951.477Poecilia_reticulata
ENSGAFG00000020953RPA110091.556ENSPREG00000010119RPA110091.111Poecilia_reticulata
ENSGAFG00000020953RPA19954.255ENSPCOG00000001799RPA19954.255Propithecus_coquereli
ENSGAFG00000020953RPA19954.532ENSPVAG00000002149RPA19953.647Pteropus_vampyrus
ENSGAFG00000020953RPA19959.146ENSPNYG00000016316rpa19960.065Pundamilia_nyererei
ENSGAFG00000020953RPA110075.303ENSPNYG00000024165RPA110075.303Pundamilia_nyererei
ENSGAFG00000020953RPA19853.261ENSPNAG00000008599rpa19951.364Pygocentrus_nattereri
ENSGAFG00000020953RPA19661.165ENSRNOG00000003123Rpa19954.726Rattus_norvegicus
ENSGAFG00000020953RPA19953.625ENSRBIG00000036587RPA19953.695Rhinopithecus_bieti
ENSGAFG00000020953RPA19953.514ENSRROG00000043278RPA19953.589Rhinopithecus_roxellana
ENSGAFG00000020953RPA16935.319YAR007CRFA17535.319Saccharomyces_cerevisiae
ENSGAFG00000020953RPA19254.892ENSSBOG00000030233RPA19755.116Saimiri_boliviensis_boliviensis
ENSGAFG00000020953RPA19954.601ENSSHAG00000007969RPA19855.215Sarcophilus_harrisii
ENSGAFG00000020953RPA19960.518ENSSFOG00015005362rpa19260.366Scleropages_formosus
ENSGAFG00000020953RPA19974.962ENSSMAG00000019746RPA19975.264Scophthalmus_maximus
ENSGAFG00000020953RPA19975.994ENSSDUG00000016358RPA19975.847Seriola_dumerili
ENSGAFG00000020953RPA19958.931ENSSDUG00000011949rpa19958.574Seriola_dumerili
ENSGAFG00000020953RPA19958.626ENSSLDG00000011806rpa19958.537Seriola_lalandi_dorsalis
ENSGAFG00000020953RPA19974.415ENSSLDG00000020784RPA19974.854Seriola_lalandi_dorsalis
ENSGAFG00000020953RPA18849.728ENSSARG00000007506RPA18449.639Sorex_araneus
ENSGAFG00000020953RPA19752.830ENSSPUG00000007223RPA19853.459Sphenodon_punctatus
ENSGAFG00000020953RPA19958.282ENSSPAG00000009903rpa19957.975Stegastes_partitus
ENSGAFG00000020953RPA19871.783ENSSPAG00000011165RPA19871.938Stegastes_partitus
ENSGAFG00000020953RPA18963.393ENSSSCG00000017822RPA19763.393Sus_scrofa
ENSGAFG00000020953RPA110053.495ENSTGUG00000005775RPA19952.656Taeniopygia_guttata
ENSGAFG00000020953RPA19966.017ENSTRUG00000000405RPA19964.895Takifugu_rubripes
ENSGAFG00000020953RPA19958.923ENSTRUG00000003616rpa19959.021Takifugu_rubripes
ENSGAFG00000020953RPA19958.548ENSTNIG00000016199rpa19959.265Tetraodon_nigroviridis
ENSGAFG00000020953RPA16764.920ENSTBEG00000002709RPA17364.920Tupaia_belangeri
ENSGAFG00000020953RPA19954.103ENSTTRG00000001169RPA19954.255Tursiops_truncatus
ENSGAFG00000020953RPA18863.043ENSUAMG00000015676RPA19767.308Ursus_americanus
ENSGAFG00000020953RPA19062.946ENSUMAG00000009328RPA19862.946Ursus_maritimus
ENSGAFG00000020953RPA19953.385ENSVPAG00000009443RPA19953.077Vicugna_pacos
ENSGAFG00000020953RPA19954.394ENSVVUG00000021715RPA19954.299Vulpes_vulpes
ENSGAFG00000020953RPA19954.878ENSXETG00000013538rpa19956.288Xenopus_tropicalis
ENSGAFG00000020953RPA19457.398ENSXCOG00000010068rpa18869.307Xiphophorus_couchianus
ENSGAFG00000020953RPA19683.732ENSXCOG00000009899-10082.297Xiphophorus_couchianus
ENSGAFG00000020953RPA19957.887ENSXMAG00000004102rpa19958.660Xiphophorus_maculatus
ENSGAFG00000020953RPA110090.429ENSXMAG00000010333RPA110090.143Xiphophorus_maculatus

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