EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAFG00000021057 (Gene tree)
Gene ID: -
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 9746 bases
Position: chrNHOQ01000244.1:7522305-7532050
Accession: ZDB-GENE-030131-5836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000031249	PABP	PF00658.18	6.5e-29	1	1
ENSGAFP00000031249	RRM_5	PF13893.6	6.2e-11	1	3
ENSGAFP00000031249	RRM_5	PF13893.6	6.2e-11	2	3
ENSGAFP00000031249	RRM_5	PF13893.6	6.2e-11	3	3
ENSGAFP00000031249	RRM_1	PF00076.22	2.7e-89	1	4
ENSGAFP00000031249	RRM_1	PF00076.22	2.7e-89	2	4
ENSGAFP00000031249	RRM_1	PF00076.22	2.7e-89	3	4
ENSGAFP00000031249	RRM_1	PF00076.22	2.7e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000031569	-	2356	-	ENSGAFP00000031249	651 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000021057's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000021057's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAFG00000021057	pabpc1l	99	66.319	ENSGAFG00000010193	pabpc1b	98	67.414
ENSGAFG00000021057	pabpc1l	99	65.872	ENSGAFG00000019750	pabpc1a	98	66.066
ENSGAFG00000021057	pabpc1l	61	39.506	ENSGAFG00000010181	sf3b4	90	39.506
ENSGAFG00000021057	pabpc1l	60	35.955	ENSGAFG00000019133	elavl1a	89	35.955
ENSGAFG00000021057	pabpc1l	60	36.364	ENSGAFG00000000715	-	95	35.897
ENSGAFG00000021057	pabpc1l	60	34.667	ENSGAFG00000012337	rbm19	69	34.667
ENSGAFG00000021057	pabpc1l	60	30.000	ENSGAFG00000002242	dtwd2	86	30.000
ENSGAFG00000021057	pabpc1l	99	67.447	ENSGAFG00000018195	pabpc4	94	72.381
ENSGAFG00000021057	pabpc1l	61	30.818	ENSGAFG00000001124	tial1	88	30.818
ENSGAFG00000021057	pabpc1l	62	30.622	ENSGAFG00000016517	ELAVL2	78	30.622

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000021057	pabpc1l	99	65.794	ENSG00000101104	PABPC1L	98	69.663	Homo_sapiens
ENSGAFG00000021057	pabpc1l	99	78.168	ENSAPOG00000010842	pabpc1l	99	78.168	Acanthochromis_polyacanthus
ENSGAFG00000021057	pabpc1l	99	61.111	ENSAMEG00000004099	PABPC1L	100	61.257	Ailuropoda_melanoleuca
ENSGAFG00000021057	pabpc1l	99	84.547	ENSACIG00000021004	-	100	84.547	Amphilophus_citrinellus
ENSGAFG00000021057	pabpc1l	100	81.942	ENSAOCG00000006167	-	100	81.942	Amphiprion_ocellaris
ENSGAFG00000021057	pabpc1l	100	79.179	ENSAPEG00000010558	-	100	81.250	Amphiprion_percula
ENSGAFG00000021057	pabpc1l	100	81.543	ENSATEG00000007428	pabpc1l	100	82.451	Anabas_testudineus
ENSGAFG00000021057	pabpc1l	99	68.147	ENSAPLG00000008415	PABPC1L	99	68.134	Anas_platyrhynchos
ENSGAFG00000021057	pabpc1l	99	69.701	ENSACAG00000011841	PABPC1L	99	69.701	Anolis_carolinensis
ENSGAFG00000021057	pabpc1l	99	65.385	ENSANAG00000026826	PABPC1L	99	65.385	Aotus_nancymaae
ENSGAFG00000021057	pabpc1l	100	87.102	ENSACLG00000024791	pabpc1l	100	87.102	Astatotilapia_calliptera
ENSGAFG00000021057	pabpc1l	100	77.610	ENSAMXG00000013552	pabpc1l	100	77.610	Astyanax_mexicanus
ENSGAFG00000021057	pabpc1l	64	87.500	ENSBTAG00000055300	-	100	87.500	Bos_taurus
ENSGAFG00000021057	pabpc1l	61	64.000	ENSBTAG00000016849	PABPC1L	83	64.000	Bos_taurus
ENSGAFG00000021057	pabpc1l	53	80.117	ENSCJAG00000038506	-	100	80.117	Callithrix_jacchus
ENSGAFG00000021057	pabpc1l	99	65.538	ENSCJAG00000017628	PABPC1L	99	65.538	Callithrix_jacchus
ENSGAFG00000021057	pabpc1l	99	61.471	ENSCAFG00000009573	PABPC1L	100	61.471	Canis_familiaris
ENSGAFG00000021057	pabpc1l	99	65.591	ENSCAFG00020013828	PABPC1L	99	65.591	Canis_lupus_dingo
ENSGAFG00000021057	pabpc1l	98	65.055	ENSCHIG00000025759	PABPC1L	91	65.055	Capra_hircus
ENSGAFG00000021057	pabpc1l	99	64.615	ENSTSYG00000006645	PABPC1L	99	64.615	Carlito_syrichta
ENSGAFG00000021057	pabpc1l	98	59.380	ENSCAPG00000014519	PABPC1L	99	59.380	Cavia_aperea
ENSGAFG00000021057	pabpc1l	99	62.175	ENSCPOG00000013633	PABPC1L	99	62.175	Cavia_porcellus
ENSGAFG00000021057	pabpc1l	99	64.923	ENSCCAG00000023338	PABPC1L	99	65.538	Cebus_capucinus
ENSGAFG00000021057	pabpc1l	99	65.794	ENSCATG00000034065	PABPC1L	99	66.154	Cercocebus_atys
ENSGAFG00000021057	pabpc1l	99	61.409	ENSCLAG00000005298	PABPC1L	99	62.021	Chinchilla_lanigera
ENSGAFG00000021057	pabpc1l	99	65.443	ENSCSAG00000014242	PABPC1L	99	65.802	Chlorocebus_sabaeus
ENSGAFG00000021057	pabpc1l	72	74.630	ENSCPBG00000017755	-	99	74.630	Chrysemys_picta_bellii
ENSGAFG00000021057	pabpc1l	55	89.916	ENSCPBG00000007810	-	81	89.916	Chrysemys_picta_bellii
ENSGAFG00000021057	pabpc1l	85	46.679	ENSCING00000002796	-	97	46.468	Ciona_intestinalis
ENSGAFG00000021057	pabpc1l	99	57.822	ENSCSAVG00000004246	-	98	57.822	Ciona_savignyi
ENSGAFG00000021057	pabpc1l	99	53.858	ENSCSAVG00000003102	-	100	83.893	Ciona_savignyi
ENSGAFG00000021057	pabpc1l	99	62.766	ENSCANG00000037530	PABPC1L	99	63.126	Colobus_angolensis_palliatus
ENSGAFG00000021057	pabpc1l	99	58.626	ENSCGRG00001021938	Pabpc1l	99	58.396	Cricetulus_griseus_chok1gshd
ENSGAFG00000021057	pabpc1l	99	58.626	ENSCGRG00000007946	Pabpc1l	99	58.396	Cricetulus_griseus_crigri
ENSGAFG00000021057	pabpc1l	99	72.881	ENSCSEG00000021295	pabpc1l	99	72.881	Cynoglossus_semilaevis
ENSGAFG00000021057	pabpc1l	100	86.371	ENSCVAG00000015943	-	99	97.710	Cyprinodon_variegatus
ENSGAFG00000021057	pabpc1l	99	74.242	ENSDARG00000002597	pabpc1l	88	96.154	Danio_rerio
ENSGAFG00000021057	pabpc1l	99	64.545	ENSDNOG00000048450	PABPC1L	99	64.545	Dasypus_novemcinctus
ENSGAFG00000021057	pabpc1l	99	62.558	ENSDORG00000001067	Pabpc1l	99	62.558	Dipodomys_ordii
ENSGAFG00000021057	pabpc1l	95	67.986	ENSETEG00000009969	PABPC1L	72	67.986	Echinops_telfairi
ENSGAFG00000021057	pabpc1l	64	85.119	ENSEASG00005023408	-	100	85.119	Equus_asinus_asinus
ENSGAFG00000021057	pabpc1l	70	63.525	ENSECAG00000040139	-	88	63.525	Equus_caballus
ENSGAFG00000021057	pabpc1l	99	62.769	ENSEEUG00000005978	PABPC1L	99	62.769	Erinaceus_europaeus
ENSGAFG00000021057	pabpc1l	100	77.912	ENSELUG00000001811	pabpc1l	100	77.912	Esox_lucius
ENSGAFG00000021057	pabpc1l	99	65.303	ENSFCAG00000011692	PABPC1L	99	65.303	Felis_catus
ENSGAFG00000021057	pabpc1l	85	68.070	ENSFALG00000005372	PABPC1L	97	64.878	Ficedula_albicollis
ENSGAFG00000021057	pabpc1l	99	61.846	ENSFDAG00000008291	PABPC1L	99	62.154	Fukomys_damarensis
ENSGAFG00000021057	pabpc1l	100	92.791	ENSFHEG00000003398	pabpc1l	100	92.791	Fundulus_heteroclitus
ENSGAFG00000021057	pabpc1l	99	77.439	ENSGMOG00000004437	pabpc1l	99	77.439	Gadus_morhua
ENSGAFG00000021057	pabpc1l	88	72.345	ENSGALG00000004123	PABPC1L	99	74.393	Gallus_gallus
ENSGAFG00000021057	pabpc1l	99	81.679	ENSGACG00000002792	pabpc1l	100	81.679	Gasterosteus_aculeatus
ENSGAFG00000021057	pabpc1l	99	70.091	ENSGAGG00000000589	PABPC1L	97	74.747	Gopherus_agassizii
ENSGAFG00000021057	pabpc1l	99	65.794	ENSGGOG00000004584	PABPC1L	99	66.154	Gorilla_gorilla
ENSGAFG00000021057	pabpc1l	100	86.495	ENSHBUG00000006134	pabpc1l	100	86.495	Haplochromis_burtoni
ENSGAFG00000021057	pabpc1l	99	62.481	ENSHGLG00000008434	PABPC1L	99	62.787	Heterocephalus_glaber_female
ENSGAFG00000021057	pabpc1l	99	62.481	ENSHGLG00100012151	PABPC1L	99	62.787	Heterocephalus_glaber_male
ENSGAFG00000021057	pabpc1l	54	86.905	ENSHGLG00100019506	-	100	86.905	Heterocephalus_glaber_male
ENSGAFG00000021057	pabpc1l	99	80.727	ENSHCOG00000009270	pabpc1l	100	80.727	Hippocampus_comes
ENSGAFG00000021057	pabpc1l	100	76.551	ENSIPUG00000012602	pabpc1l	100	76.551	Ictalurus_punctatus
ENSGAFG00000021057	pabpc1l	61	52.913	ENSIPUG00000006760	-	88	52.913	Ictalurus_punctatus
ENSGAFG00000021057	pabpc1l	61	52.913	ENSIPUG00000006780	-	85	52.913	Ictalurus_punctatus
ENSGAFG00000021057	pabpc1l	99	64.462	ENSSTOG00000003739	PABPC1L	99	64.462	Ictidomys_tridecemlineatus
ENSGAFG00000021057	pabpc1l	99	49.915	ENSJJAG00000022406	Pabpc1l	99	48.851	Jaculus_jaculus
ENSGAFG00000021057	pabpc1l	100	83.308	ENSKMAG00000016847	pabpc1l	100	83.308	Kryptolebias_marmoratus
ENSGAFG00000021057	pabpc1l	100	84.825	ENSLBEG00000010084	pabpc1l	100	84.825	Labrus_bergylta
ENSGAFG00000021057	pabpc1l	99	67.704	ENSLACG00000005762	PABPC1L	99	67.704	Latimeria_chalumnae
ENSGAFG00000021057	pabpc1l	99	75.264	ENSLOCG00000007519	pabpc1l	99	75.264	Lepisosteus_oculatus
ENSGAFG00000021057	pabpc1l	99	63.664	ENSLAFG00000003553	PABPC1L	100	63.664	Loxodonta_africana
ENSGAFG00000021057	pabpc1l	99	66.102	ENSMFAG00000040365	PABPC1L	99	66.462	Macaca_fascicularis
ENSGAFG00000021057	pabpc1l	99	64.340	ENSMNEG00000032298	PABPC1L	99	64.697	Macaca_nemestrina
ENSGAFG00000021057	pabpc1l	99	65.794	ENSMLEG00000043139	PABPC1L	99	66.154	Mandrillus_leucophaeus
ENSGAFG00000021057	pabpc1l	97	83.281	ENSMAMG00000011854	pabpc1l	97	83.281	Mastacembelus_armatus
ENSGAFG00000021057	pabpc1l	100	87.102	ENSMZEG00005023713	pabpc1l	100	87.102	Maylandia_zebra
ENSGAFG00000021057	pabpc1l	99	68.533	ENSMGAG00000003674	PABPC1L	99	68.533	Meleagris_gallopavo
ENSGAFG00000021057	pabpc1l	99	57.143	ENSMOCG00000013186	Pabpc1l	99	57.143	Microtus_ochrogaster
ENSGAFG00000021057	pabpc1l	99	81.279	ENSMMOG00000020574	-	90	96.923	Mola_mola
ENSGAFG00000021057	pabpc1l	97	66.512	ENSMODG00000016198	PABPC1L	99	66.512	Monodelphis_domestica
ENSGAFG00000021057	pabpc1l	99	84.370	ENSMALG00000021622	pabpc1l	99	84.370	Monopterus_albus
ENSGAFG00000021057	pabpc1l	99	58.752	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	58.752	Mus_caroli
ENSGAFG00000021057	pabpc1l	99	58.752	ENSMUSG00000054582	Pabpc1l	99	58.752	Mus_musculus
ENSGAFG00000021057	pabpc1l	100	59.332	MGP_PahariEiJ_G0026071	Pabpc1l	100	59.332	Mus_pahari
ENSGAFG00000021057	pabpc1l	99	58.752	MGP_SPRETEiJ_G0025549	Pabpc1l	99	58.752	Mus_spretus
ENSGAFG00000021057	pabpc1l	99	65.152	ENSMPUG00000017646	PABPC1L	99	65.152	Mustela_putorius_furo
ENSGAFG00000021057	pabpc1l	98	63.497	ENSMLUG00000006324	PABPC1L	98	63.497	Myotis_lucifugus
ENSGAFG00000021057	pabpc1l	99	60.123	ENSNGAG00000010458	Pabpc1l	99	60.123	Nannospalax_galili
ENSGAFG00000021057	pabpc1l	100	83.435	ENSNBRG00000016633	pabpc1l	100	83.435	Neolamprologus_brichardi
ENSGAFG00000021057	pabpc1l	90	61.525	ENSMEUG00000007905	-	89	61.525	Notamacropus_eugenii
ENSGAFG00000021057	pabpc1l	99	64.012	ENSOPRG00000011846	PABPC1L	99	64.012	Ochotona_princeps
ENSGAFG00000021057	pabpc1l	99	58.025	ENSODEG00000015482	PABPC1L	99	58.025	Octodon_degus
ENSGAFG00000021057	pabpc1l	60	80.625	ENSODEG00000002920	-	97	80.625	Octodon_degus
ENSGAFG00000021057	pabpc1l	100	84.195	ENSONIG00000017314	pabpc1l	100	84.195	Oreochromis_niloticus
ENSGAFG00000021057	pabpc1l	90	59.628	ENSOANG00000015793	-	100	59.628	Ornithorhynchus_anatinus
ENSGAFG00000021057	pabpc1l	99	61.773	ENSOCUG00000003005	PABPC1L	99	61.919	Oryctolagus_cuniculus
ENSGAFG00000021057	pabpc1l	100	82.067	ENSORLG00000010322	pabpc1l	100	83.043	Oryzias_latipes
ENSGAFG00000021057	pabpc1l	100	81.763	ENSORLG00020021193	pabpc1l	100	83.043	Oryzias_latipes_hni
ENSGAFG00000021057	pabpc1l	100	81.915	ENSORLG00015017018	pabpc1l	100	83.043	Oryzias_latipes_hsok
ENSGAFG00000021057	pabpc1l	100	86.495	ENSOMEG00000010789	pabpc1l	100	86.495	Oryzias_melastigma
ENSGAFG00000021057	pabpc1l	99	64.340	ENSOGAG00000032999	PABPC1L	99	64.340	Otolemur_garnettii
ENSGAFG00000021057	pabpc1l	99	64.923	ENSOARG00000004578	PABPC1L	99	64.923	Ovis_aries
ENSGAFG00000021057	pabpc1l	99	65.948	ENSPPAG00000039677	PABPC1L	99	66.308	Pan_paniscus
ENSGAFG00000021057	pabpc1l	64	61.517	ENSPPRG00000019327	-	98	61.517	Panthera_pardus
ENSGAFG00000021057	pabpc1l	99	65.138	ENSPTIG00000006524	PABPC1L	99	65.138	Panthera_tigris_altaica
ENSGAFG00000021057	pabpc1l	64	69.944	ENSPTRG00000013531	PABPC1L	98	69.944	Pan_troglodytes
ENSGAFG00000021057	pabpc1l	99	65.794	ENSPANG00000018788	PABPC1L	99	66.154	Papio_anubis
ENSGAFG00000021057	pabpc1l	100	74.773	ENSPKIG00000007322	pabpc1l	100	74.773	Paramormyrops_kingsleyae
ENSGAFG00000021057	pabpc1l	55	83.969	ENSPKIG00000016810	-	93	83.969	Paramormyrops_kingsleyae
ENSGAFG00000021057	pabpc1l	69	76.169	ENSPSIG00000013289	PABPC1L	99	76.169	Pelodiscus_sinensis
ENSGAFG00000021057	pabpc1l	66	83.077	ENSPMGG00000023121	-	91	83.077	Periophthalmus_magnuspinnatus
ENSGAFG00000021057	pabpc1l	51	96.970	ENSPMGG00000023117	pabpc1l	92	96.970	Periophthalmus_magnuspinnatus
ENSGAFG00000021057	pabpc1l	99	57.450	ENSPEMG00000020671	Pabpc1l	99	57.887	Peromyscus_maniculatus_bairdii
ENSGAFG00000021057	pabpc1l	100	93.088	ENSPFOG00000013241	pabpc1l	100	93.088	Poecilia_formosa
ENSGAFG00000021057	pabpc1l	100	97.849	ENSPLAG00000017490	-	100	97.849	Poecilia_latipinna
ENSGAFG00000021057	pabpc1l	100	97.389	ENSPMEG00000007677	pabpc1l	100	97.389	Poecilia_mexicana
ENSGAFG00000021057	pabpc1l	68	90.745	ENSPREG00000015886	pabpc1l	99	90.745	Poecilia_reticulata
ENSGAFG00000021057	pabpc1l	99	65.794	ENSPPYG00000011042	PABPC1L	99	66.154	Pongo_abelii
ENSGAFG00000021057	pabpc1l	55	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSGAFG00000021057	pabpc1l	99	64.492	ENSPCOG00000020630	PABPC1L	99	65.000	Propithecus_coquereli
ENSGAFG00000021057	pabpc1l	99	65.084	ENSPVAG00000012663	PABPC1L	99	65.084	Pteropus_vampyrus
ENSGAFG00000021057	pabpc1l	100	79.818	ENSPNYG00000004101	pabpc1l	100	79.818	Pundamilia_nyererei
ENSGAFG00000021057	pabpc1l	100	71.407	ENSPNAG00000021248	pabpc1l	100	71.407	Pygocentrus_nattereri
ENSGAFG00000021057	pabpc1l	99	58.652	ENSRNOG00000012750	Pabpc1l	99	59.237	Rattus_norvegicus
ENSGAFG00000021057	pabpc1l	99	65.291	ENSRBIG00000035381	PABPC1L	99	65.802	Rhinopithecus_bieti
ENSGAFG00000021057	pabpc1l	99	65.639	ENSRROG00000044498	PABPC1L	99	66.000	Rhinopithecus_roxellana
ENSGAFG00000021057	pabpc1l	99	65.231	ENSSBOG00000009532	-	99	65.231	Saimiri_boliviensis_boliviensis
ENSGAFG00000021057	pabpc1l	98	60.264	ENSSHAG00000011446	PABPC1L	100	60.264	Sarcophilus_harrisii
ENSGAFG00000021057	pabpc1l	100	75.529	ENSSFOG00015017304	pabpc1l	100	75.529	Scleropages_formosus
ENSGAFG00000021057	pabpc1l	100	81.915	ENSSMAG00000010516	pabpc1l	93	99.225	Scophthalmus_maximus
ENSGAFG00000021057	pabpc1l	100	86.515	ENSSDUG00000014743	pabpc1l	100	86.515	Seriola_dumerili
ENSGAFG00000021057	pabpc1l	97	80.251	ENSSLDG00000006981	pabpc1l	94	89.773	Seriola_lalandi_dorsalis
ENSGAFG00000021057	pabpc1l	99	68.263	ENSSPUG00000004233	PABPC1L	99	68.263	Sphenodon_punctatus
ENSGAFG00000021057	pabpc1l	100	71.582	ENSSPAG00000017137	pabpc1l	100	73.118	Stegastes_partitus
ENSGAFG00000021057	pabpc1l	99	64.165	ENSSSCG00000007382	PABPC1L	99	64.165	Sus_scrofa
ENSGAFG00000021057	pabpc1l	99	67.359	ENSTGUG00000005114	PABPC1L	100	67.359	Taeniopygia_guttata
ENSGAFG00000021057	pabpc1l	97	81.221	ENSTRUG00000011085	pabpc1l	97	81.221	Takifugu_rubripes
ENSGAFG00000021057	pabpc1l	99	79.511	ENSTNIG00000017903	pabpc1l	98	79.511	Tetraodon_nigroviridis
ENSGAFG00000021057	pabpc1l	94	69.136	ENSTBEG00000002851	PABPC1L	79	69.136	Tupaia_belangeri
ENSGAFG00000021057	pabpc1l	94	63.065	ENSTTRG00000007618	PABPC1L	100	63.365	Tursiops_truncatus
ENSGAFG00000021057	pabpc1l	99	63.070	ENSUAMG00000017682	PABPC1L	99	63.070	Ursus_americanus
ENSGAFG00000021057	pabpc1l	68	67.519	ENSUMAG00000025436	PABPC1L	92	67.519	Ursus_maritimus
ENSGAFG00000021057	pabpc1l	98	70.040	ENSVVUG00000018939	PABPC1L	96	70.040	Vulpes_vulpes
ENSGAFG00000021057	pabpc1l	99	66.316	ENSXETG00000022831	pabpc1l	99	66.316	Xenopus_tropicalis
ENSGAFG00000021057	pabpc1l	100	92.627	ENSXCOG00000005459	pabpc1l	99	94.326	Xiphophorus_couchianus
ENSGAFG00000021057	pabpc1l	100	98.618	ENSXMAG00000017135	pabpc1l	100	98.618	Xiphophorus_maculatus