EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000021170 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 6676 bases
Position: chrNHOQ01000293.1:613010-619685
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000031415	Smg4_UPF3	PF03467.15	2.3e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000031735	-	2654	-	ENSGAFP00000031415	464 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000021170's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000021170's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000021170	upf3a	90	56.591	ENSG00000169062	UPF3A	92	56.591	Homo_sapiens
ENSGAFG00000021170	upf3a	100	90.302	ENSAPOG00000013484	upf3a	100	90.302	Acanthochromis_polyacanthus
ENSGAFG00000021170	upf3a	84	58.435	ENSAMEG00000004259	UPF3A	93	56.542	Ailuropoda_melanoleuca
ENSGAFG00000021170	upf3a	98	85.325	ENSACIG00000020468	upf3a	99	85.325	Amphilophus_citrinellus
ENSGAFG00000021170	upf3a	89	47.289	ENSACIG00000013582	upf3b	93	47.608	Amphilophus_citrinellus
ENSGAFG00000021170	upf3a	62	60.984	ENSAOCG00000000706	upf3b	93	48.624	Amphiprion_ocellaris
ENSGAFG00000021170	upf3a	100	91.164	ENSAOCG00000020784	upf3a	100	91.164	Amphiprion_ocellaris
ENSGAFG00000021170	upf3a	100	91.164	ENSAPEG00000003519	upf3a	100	91.164	Amphiprion_percula
ENSGAFG00000021170	upf3a	100	88.793	ENSATEG00000005843	upf3a	100	88.793	Anabas_testudineus
ENSGAFG00000021170	upf3a	82	66.162	ENSACAG00000001540	UPF3A	94	66.414	Anolis_carolinensis
ENSGAFG00000021170	upf3a	92	54.468	ENSANAG00000021713	UPF3A	97	54.468	Aotus_nancymaae
ENSGAFG00000021170	upf3a	83	46.059	ENSANAG00000025598	-	65	66.667	Aotus_nancymaae
ENSGAFG00000021170	upf3a	100	86.100	ENSACLG00000026274	upf3a	100	86.100	Astatotilapia_calliptera
ENSGAFG00000021170	upf3a	99	79.698	ENSAMXG00000002608	upf3a	100	79.698	Astyanax_mexicanus
ENSGAFG00000021170	upf3a	56	30.515	WBGene00004882	smg-4	50	32.164	Caenorhabditis_elegans
ENSGAFG00000021170	upf3a	82	51.090	ENSCJAG00000004975	UPF3B	77	69.091	Callithrix_jacchus
ENSGAFG00000021170	upf3a	91	55.856	ENSCJAG00000019102	UPF3A	95	55.240	Callithrix_jacchus
ENSGAFG00000021170	upf3a	82	45.113	ENSCAFG00020004074	UPF3B	64	72.603	Canis_lupus_dingo
ENSGAFG00000021170	upf3a	83	57.323	ENSCHIG00000008682	UPF3A	85	54.503	Capra_hircus
ENSGAFG00000021170	upf3a	82	51.456	ENSTSYG00000014690	UPF3B	76	64.706	Carlito_syrichta
ENSGAFG00000021170	upf3a	70	60.661	ENSCPOG00000006824	UPF3A	77	60.177	Cavia_porcellus
ENSGAFG00000021170	upf3a	81	37.789	ENSCCAG00000029813	-	52	58.861	Cebus_capucinus
ENSGAFG00000021170	upf3a	93	56.645	ENSCCAG00000018406	UPF3A	96	56.739	Cebus_capucinus
ENSGAFG00000021170	upf3a	88	58.353	ENSCATG00000029733	UPF3A	95	56.920	Cercocebus_atys
ENSGAFG00000021170	upf3a	88	57.809	ENSCSAG00000017388	UPF3A	95	55.965	Chlorocebus_sabaeus
ENSGAFG00000021170	upf3a	99	85.097	ENSCSEG00000005106	upf3a	99	85.097	Cynoglossus_semilaevis
ENSGAFG00000021170	upf3a	100	90.517	ENSCVAG00000022333	upf3a	100	90.517	Cyprinodon_variegatus
ENSGAFG00000021170	upf3a	99	78.402	ENSDARG00000069297	upf3a	100	78.402	Danio_rerio
ENSGAFG00000021170	upf3a	77	63.315	ENSDNOG00000034391	UPF3A	83	63.144	Dasypus_novemcinctus
ENSGAFG00000021170	upf3a	82	56.675	ENSETEG00000010110	UPF3A	94	52.735	Echinops_telfairi
ENSGAFG00000021170	upf3a	82	48.130	ENSEASG00005012919	UPF3B	62	69.565	Equus_asinus_asinus
ENSGAFG00000021170	upf3a	88	57.143	ENSEASG00005021884	UPF3A	89	57.143	Equus_asinus_asinus
ENSGAFG00000021170	upf3a	88	57.143	ENSECAG00000017141	UPF3A	89	57.143	Equus_caballus
ENSGAFG00000021170	upf3a	82	48.130	ENSECAG00000016947	UPF3B	62	62.857	Equus_caballus
ENSGAFG00000021170	upf3a	99	78.936	ENSELUG00000011050	upf3a	100	78.936	Esox_lucius
ENSGAFG00000021170	upf3a	88	57.798	ENSFCAG00000014602	UPF3A	92	56.854	Felis_catus
ENSGAFG00000021170	upf3a	69	81.931	ENSGACG00000001972	upf3a	100	81.931	Gasterosteus_aculeatus
ENSGAFG00000021170	upf3a	82	45.735	ENSGACG00000017435	upf3b	60	70.122	Gasterosteus_aculeatus
ENSGAFG00000021170	upf3a	82	48.469	ENSGGOG00000041219	-	87	46.939	Gorilla_gorilla
ENSGAFG00000021170	upf3a	88	45.894	ENSGGOG00000043074	-	82	46.701	Gorilla_gorilla
ENSGAFG00000021170	upf3a	90	57.309	ENSGGOG00000015428	UPF3A	92	57.045	Gorilla_gorilla
ENSGAFG00000021170	upf3a	100	89.224	ENSHBUG00000011325	upf3a	99	89.417	Haplochromis_burtoni
ENSGAFG00000021170	upf3a	76	56.593	ENSHGLG00000001544	UPF3A	86	56.593	Heterocephalus_glaber_female
ENSGAFG00000021170	upf3a	76	56.593	ENSHGLG00100013244	UPF3A	86	56.593	Heterocephalus_glaber_male
ENSGAFG00000021170	upf3a	97	77.363	ENSHCOG00000013985	upf3a	97	77.363	Hippocampus_comes
ENSGAFG00000021170	upf3a	99	78.402	ENSIPUG00000023450	upf3a	100	78.402	Ictalurus_punctatus
ENSGAFG00000021170	upf3a	100	89.677	ENSKMAG00000004381	upf3a	100	89.677	Kryptolebias_marmoratus
ENSGAFG00000021170	upf3a	98	83.553	ENSLBEG00000021570	upf3a	100	81.878	Labrus_bergylta
ENSGAFG00000021170	upf3a	60	42.522	ENSLACG00000006645	UPF3A	66	85.714	Latimeria_chalumnae
ENSGAFG00000021170	upf3a	97	73.856	ENSLOCG00000002665	upf3a	98	73.856	Lepisosteus_oculatus
ENSGAFG00000021170	upf3a	88	56.974	ENSMFAG00000045016	UPF3A	95	55.157	Macaca_fascicularis
ENSGAFG00000021170	upf3a	87	57.421	ENSMMUG00000007449	UPF3A	95	56.492	Macaca_mulatta
ENSGAFG00000021170	upf3a	85	58.396	ENSMNEG00000036402	UPF3A	83	58.853	Macaca_nemestrina
ENSGAFG00000021170	upf3a	80	60.212	ENSMLEG00000014726	UPF3A	94	58.354	Mandrillus_leucophaeus
ENSGAFG00000021170	upf3a	100	85.000	ENSMAMG00000018364	upf3a	100	85.000	Mastacembelus_armatus
ENSGAFG00000021170	upf3a	100	86.100	ENSMZEG00005021571	upf3a	100	86.100	Maylandia_zebra
ENSGAFG00000021170	upf3a	82	64.557	ENSMGAG00000014837	UPF3A	96	64.810	Meleagris_gallopavo
ENSGAFG00000021170	upf3a	100	82.121	ENSMMOG00000019751	upf3a	100	82.121	Mola_mola
ENSGAFG00000021170	upf3a	85	65.526	ENSMODG00000003159	UPF3A	95	65.686	Monodelphis_domestica
ENSGAFG00000021170	upf3a	89	56.264	ENSMPUG00000009139	UPF3A	90	56.264	Mustela_putorius_furo
ENSGAFG00000021170	upf3a	80	61.381	ENSMLUG00000015905	UPF3A	92	61.381	Myotis_lucifugus
ENSGAFG00000021170	upf3a	84	55.941	ENSNGAG00000019314	Upf3a	95	55.941	Nannospalax_galili
ENSGAFG00000021170	upf3a	100	89.440	ENSNBRG00000000828	upf3a	100	89.440	Neolamprologus_brichardi
ENSGAFG00000021170	upf3a	84	60.152	ENSNLEG00000007563	UPF3A	92	56.916	Nomascus_leucogenys
ENSGAFG00000021170	upf3a	100	89.700	ENSONIG00000006817	upf3a	100	89.700	Oreochromis_niloticus
ENSGAFG00000021170	upf3a	77	55.707	ENSOANG00000006985	-	95	55.707	Ornithorhynchus_anatinus
ENSGAFG00000021170	upf3a	100	84.188	ENSORLG00000010911	upf3a	100	84.188	Oryzias_latipes
ENSGAFG00000021170	upf3a	84	41.686	ENSORLG00020003758	upf3b	61	58.824	Oryzias_latipes_hni
ENSGAFG00000021170	upf3a	100	83.621	ENSORLG00020014317	upf3a	100	83.621	Oryzias_latipes_hni
ENSGAFG00000021170	upf3a	100	84.052	ENSORLG00015017339	upf3a	58	84.052	Oryzias_latipes_hsok
ENSGAFG00000021170	upf3a	100	85.129	ENSOMEG00000014425	upf3a	100	85.129	Oryzias_melastigma
ENSGAFG00000021170	upf3a	74	60.274	ENSOGAG00000004788	UPF3A	88	60.548	Otolemur_garnettii
ENSGAFG00000021170	upf3a	83	58.458	ENSOARG00000009004	UPF3A	84	58.750	Ovis_aries
ENSGAFG00000021170	upf3a	90	56.364	ENSPPAG00000042267	UPF3A	92	56.364	Pan_paniscus
ENSGAFG00000021170	upf3a	90	56.629	ENSPPRG00000025062	UPF3A	92	55.955	Panthera_pardus
ENSGAFG00000021170	upf3a	82	48.469	ENSPTRG00000041187	-	87	45.153	Pan_troglodytes
ENSGAFG00000021170	upf3a	82	44.898	ENSPTRG00000051640	-	87	43.112	Pan_troglodytes
ENSGAFG00000021170	upf3a	90	56.364	ENSPTRG00000006073	UPF3A	92	56.364	Pan_troglodytes
ENSGAFG00000021170	upf3a	88	58.588	ENSPANG00000004346	UPF3A	95	57.143	Papio_anubis
ENSGAFG00000021170	upf3a	88	74.396	ENSPKIG00000004422	upf3a	98	67.917	Paramormyrops_kingsleyae
ENSGAFG00000021170	upf3a	91	49.002	ENSPKIG00000019226	upf3b	93	64.474	Paramormyrops_kingsleyae
ENSGAFG00000021170	upf3a	83	67.758	ENSPSIG00000007468	UPF3A	96	67.758	Pelodiscus_sinensis
ENSGAFG00000021170	upf3a	100	80.206	ENSPMGG00000012696	upf3a	100	80.206	Periophthalmus_magnuspinnatus
ENSGAFG00000021170	upf3a	73	68.282	ENSPCIG00000019590	-	90	65.534	Phascolarctos_cinereus
ENSGAFG00000021170	upf3a	100	97.198	ENSPFOG00000013222	upf3a	100	97.198	Poecilia_formosa
ENSGAFG00000021170	upf3a	98	96.718	ENSPLAG00000011960	upf3a	100	96.718	Poecilia_latipinna
ENSGAFG00000021170	upf3a	100	93.582	ENSPMEG00000000836	upf3a	100	93.582	Poecilia_mexicana
ENSGAFG00000021170	upf3a	90	56.364	ENSPPYG00000005536	UPF3A	92	56.364	Pongo_abelii
ENSGAFG00000021170	upf3a	85	46.209	ENSPCOG00000021960	UPF3B	51	70.122	Propithecus_coquereli
ENSGAFG00000021170	upf3a	82	58.270	ENSPVAG00000005656	UPF3A	82	57.215	Pteropus_vampyrus
ENSGAFG00000021170	upf3a	100	86.100	ENSPNYG00000011289	upf3a	100	86.100	Pundamilia_nyererei
ENSGAFG00000021170	upf3a	99	78.402	ENSPNAG00000019532	upf3a	100	78.603	Pygocentrus_nattereri
ENSGAFG00000021170	upf3a	84	51.765	ENSPNAG00000021528	upf3b	56	71.429	Pygocentrus_nattereri
ENSGAFG00000021170	upf3a	71	63.939	ENSRNOG00000017397	Upf3a	81	63.939	Rattus_norvegicus
ENSGAFG00000021170	upf3a	80	60.053	ENSRBIG00000034007	UPF3A	91	58.209	Rhinopithecus_bieti
ENSGAFG00000021170	upf3a	80	60.372	ENSRROG00000012212	UPF3A	85	58.500	Rhinopithecus_roxellana
ENSGAFG00000021170	upf3a	82	52.311	ENSSBOG00000019740	UPF3B	78	70.552	Saimiri_boliviensis_boliviensis
ENSGAFG00000021170	upf3a	75	57.382	ENSSBOG00000029989	UPF3A	84	56.568	Saimiri_boliviensis_boliviensis
ENSGAFG00000021170	upf3a	87	64.663	ENSSHAG00000009895	UPF3A	96	66.256	Sarcophilus_harrisii
ENSGAFG00000021170	upf3a	99	69.612	ENSSFOG00015021851	upf3a	100	66.951	Scleropages_formosus
ENSGAFG00000021170	upf3a	82	52.798	ENSSMAG00000012913	upf3b	54	71.951	Scophthalmus_maximus
ENSGAFG00000021170	upf3a	100	80.081	ENSSMAG00000003858	upf3a	100	81.301	Scophthalmus_maximus
ENSGAFG00000021170	upf3a	100	86.042	ENSSDUG00000009680	upf3a	100	86.042	Seriola_dumerili
ENSGAFG00000021170	upf3a	100	89.009	ENSSLDG00000009700	upf3a	100	89.009	Seriola_lalandi_dorsalis
ENSGAFG00000021170	upf3a	79	50.130	ENSSARG00000007262	UPF3A	92	49.091	Sorex_araneus
ENSGAFG00000021170	upf3a	100	84.267	ENSSPAG00000007938	upf3a	100	90.517	Stegastes_partitus
ENSGAFG00000021170	upf3a	81	58.824	ENSSSCG00000024679	UPF3A	78	58.524	Sus_scrofa
ENSGAFG00000021170	upf3a	83	67.929	ENSTGUG00000009493	UPF3A	100	68.514	Taeniopygia_guttata
ENSGAFG00000021170	upf3a	100	80.819	ENSTRUG00000012730	upf3a	100	80.819	Takifugu_rubripes
ENSGAFG00000021170	upf3a	83	74.365	ENSTNIG00000014973	upf3a	100	73.858	Tetraodon_nigroviridis
ENSGAFG00000021170	upf3a	73	55.493	ENSTTRG00000015414	UPF3A	74	55.056	Tursiops_truncatus
ENSGAFG00000021170	upf3a	80	58.333	ENSVPAG00000003525	UPF3A	94	58.333	Vicugna_pacos
ENSGAFG00000021170	upf3a	82	45.113	ENSVVUG00000011594	UPF3B	77	69.697	Vulpes_vulpes
ENSGAFG00000021170	upf3a	83	46.535	ENSXETG00000007440	upf3b	71	71.951	Xenopus_tropicalis
ENSGAFG00000021170	upf3a	84	59.391	ENSXETG00000002572	upf3a	93	59.391	Xenopus_tropicalis
ENSGAFG00000021170	upf3a	100	98.707	ENSXMAG00000013452	upf3a	100	98.707	Xiphophorus_maculatus