EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000021217 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 4247 bases
Position: chrNHOQ01000293.1:2114537-2118783
Accession: ZDB-GENE-041010-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000031484	CMS1	PF14617.6	2.7e-32	1	1
ENSGAFP00000031484	DEAD	PF00270.29	3.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000031804	-	795	-	ENSGAFP00000031484	264 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000021217's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000021217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000021217	cmss1	77	62.871	ENSG00000184220	CMSS1	98	65.000	Homo_sapiens
ENSGAFG00000021217	cmss1	77	84.729	ENSAPOG00000010604	cmss1	98	74.621	Acanthochromis_polyacanthus
ENSGAFG00000021217	cmss1	77	63.054	ENSAMEG00000004092	CMSS1	82	61.792	Ailuropoda_melanoleuca
ENSGAFG00000021217	cmss1	98	70.566	ENSACIG00000021854	cmss1	99	70.566	Amphilophus_citrinellus
ENSGAFG00000021217	cmss1	77	85.714	ENSAOCG00000013361	cmss1	92	75.940	Amphiprion_ocellaris
ENSGAFG00000021217	cmss1	77	85.714	ENSAPEG00000005829	cmss1	92	76.030	Amphiprion_percula
ENSGAFG00000021217	cmss1	96	74.308	ENSATEG00000008209	cmss1	94	72.932	Anabas_testudineus
ENSGAFG00000021217	cmss1	77	61.386	ENSAPLG00000010542	CMSS1	90	61.836	Anas_platyrhynchos
ENSGAFG00000021217	cmss1	77	63.366	ENSACAG00000011065	CMSS1	76	63.285	Anolis_carolinensis
ENSGAFG00000021217	cmss1	77	62.376	ENSANAG00000023565	CMSS1	79	62.319	Aotus_nancymaae
ENSGAFG00000021217	cmss1	99	77.068	ENSACLG00000027294	cmss1	92	76.952	Astatotilapia_calliptera
ENSGAFG00000021217	cmss1	76	64.500	ENSAMXG00000002046	cmss1	70	65.700	Astyanax_mexicanus
ENSGAFG00000021217	cmss1	77	64.851	ENSBTAG00000013663	CMSS1	75	65.217	Bos_taurus
ENSGAFG00000021217	cmss1	77	63.366	ENSCJAG00000000610	CMSS1	79	63.285	Callithrix_jacchus
ENSGAFG00000021217	cmss1	77	62.871	ENSCAFG00000009230	CMSS1	75	62.802	Canis_familiaris
ENSGAFG00000021217	cmss1	77	62.871	ENSCAFG00020009464	-	76	62.802	Canis_lupus_dingo
ENSGAFG00000021217	cmss1	72	64.550	ENSCAFG00020024156	-	61	63.776	Canis_lupus_dingo
ENSGAFG00000021217	cmss1	77	64.851	ENSCHIG00000013003	CMSS1	75	65.217	Capra_hircus
ENSGAFG00000021217	cmss1	77	63.366	ENSTSYG00000009266	CMSS1	80	63.768	Carlito_syrichta
ENSGAFG00000021217	cmss1	70	55.914	ENSCAPG00000013584	CMSS1	87	55.914	Cavia_aperea
ENSGAFG00000021217	cmss1	76	64.000	ENSCPOG00000014680	CMSS1	74	64.734	Cavia_porcellus
ENSGAFG00000021217	cmss1	77	62.871	ENSCCAG00000034685	CMSS1	79	62.802	Cebus_capucinus
ENSGAFG00000021217	cmss1	77	63.861	ENSCATG00000031980	CMSS1	79	63.768	Cercocebus_atys
ENSGAFG00000021217	cmss1	76	63.500	ENSCLAG00000011241	CMSS1	89	63.768	Chinchilla_lanigera
ENSGAFG00000021217	cmss1	77	63.861	ENSCSAG00000006024	CMSS1	84	63.768	Chlorocebus_sabaeus
ENSGAFG00000021217	cmss1	76	46.000	ENSCHOG00000012098	CMSS1	75	46.377	Choloepus_hoffmanni
ENSGAFG00000021217	cmss1	73	43.367	ENSCING00000014848	-	99	43.850	Ciona_intestinalis
ENSGAFG00000021217	cmss1	77	63.861	ENSCANG00000031337	CMSS1	79	63.768	Colobus_angolensis_palliatus
ENSGAFG00000021217	cmss1	77	61.881	ENSCGRG00001014305	Cmss1	74	62.136	Cricetulus_griseus_chok1gshd
ENSGAFG00000021217	cmss1	77	61.881	ENSCGRG00000006722	Cmss1	80	62.136	Cricetulus_griseus_crigri
ENSGAFG00000021217	cmss1	77	75.862	ENSCSEG00000004958	cmss1	91	66.914	Cynoglossus_semilaevis
ENSGAFG00000021217	cmss1	95	80.309	ENSCVAG00000005039	cmss1	93	78.832	Cyprinodon_variegatus
ENSGAFG00000021217	cmss1	77	68.473	ENSDARG00000112579	cmss1	71	68.599	Danio_rerio
ENSGAFG00000021217	cmss1	77	61.881	ENSDNOG00000040418	CMSS1	75	61.353	Dasypus_novemcinctus
ENSGAFG00000021217	cmss1	76	63.000	ENSDORG00000010461	Cmss1	74	63.285	Dipodomys_ordii
ENSGAFG00000021217	cmss1	50	49.242	ENSEBUG00000002156	-	96	49.242	Eptatretus_burgeri
ENSGAFG00000021217	cmss1	76	62.500	ENSEASG00005010966	CMSS1	94	62.802	Equus_asinus_asinus
ENSGAFG00000021217	cmss1	76	62.000	ENSECAG00000015662	CMSS1	91	62.319	Equus_caballus
ENSGAFG00000021217	cmss1	76	44.000	ENSEEUG00000007624	-	74	44.444	Erinaceus_europaeus
ENSGAFG00000021217	cmss1	98	63.077	ENSELUG00000019459	cmss1	69	72.947	Esox_lucius
ENSGAFG00000021217	cmss1	76	64.000	ENSFCAG00000044577	CMSS1	74	64.251	Felis_catus
ENSGAFG00000021217	cmss1	77	60.891	ENSFALG00000005816	CMSS1	87	61.353	Ficedula_albicollis
ENSGAFG00000021217	cmss1	77	63.861	ENSFDAG00000012577	CMSS1	91	64.251	Fukomys_damarensis
ENSGAFG00000021217	cmss1	77	88.177	ENSFHEG00000012008	cmss1	87	86.792	Fundulus_heteroclitus
ENSGAFG00000021217	cmss1	77	75.369	ENSGMOG00000016729	cmss1	93	65.543	Gadus_morhua
ENSGAFG00000021217	cmss1	77	62.376	ENSGALG00000015267	CMSS1	79	62.802	Gallus_gallus
ENSGAFG00000021217	cmss1	77	75.862	ENSGACG00000002798	cmss1	90	68.217	Gasterosteus_aculeatus
ENSGAFG00000021217	cmss1	77	64.356	ENSGAGG00000019861	CMSS1	81	64.251	Gopherus_agassizii
ENSGAFG00000021217	cmss1	77	63.366	ENSGGOG00000014125	CMSS1	79	63.285	Gorilla_gorilla
ENSGAFG00000021217	cmss1	99	75.746	ENSHBUG00000008431	cmss1	94	76.015	Haplochromis_burtoni
ENSGAFG00000021217	cmss1	76	62.500	ENSHGLG00000019481	CMSS1	84	63.285	Heterocephalus_glaber_female
ENSGAFG00000021217	cmss1	76	62.500	ENSHGLG00100010314	CMSS1	83	63.285	Heterocephalus_glaber_male
ENSGAFG00000021217	cmss1	77	77.833	ENSHCOG00000003222	cmss1	70	78.261	Hippocampus_comes
ENSGAFG00000021217	cmss1	77	69.951	ENSIPUG00000011591	cmss1	71	70.531	Ictalurus_punctatus
ENSGAFG00000021217	cmss1	77	64.356	ENSSTOG00000019366	CMSS1	74	64.251	Ictidomys_tridecemlineatus
ENSGAFG00000021217	cmss1	77	63.366	ENSJJAG00000014894	Cmss1	91	63.235	Jaculus_jaculus
ENSGAFG00000021217	cmss1	100	66.415	ENSKMAG00000002390	cmss1	100	66.415	Kryptolebias_marmoratus
ENSGAFG00000021217	cmss1	77	77.451	ENSLBEG00000006298	cmss1	99	67.669	Labrus_bergylta
ENSGAFG00000021217	cmss1	77	63.366	ENSLACG00000009293	CMSS1	90	63.285	Latimeria_chalumnae
ENSGAFG00000021217	cmss1	77	60.891	ENSLOCG00000009391	cmss1	73	61.353	Lepisosteus_oculatus
ENSGAFG00000021217	cmss1	76	63.000	ENSLAFG00000017509	CMSS1	93	62.559	Loxodonta_africana
ENSGAFG00000021217	cmss1	77	63.366	ENSMFAG00000045006	CMSS1	79	63.285	Macaca_fascicularis
ENSGAFG00000021217	cmss1	77	62.871	ENSMMUG00000002939	CMSS1	88	63.959	Macaca_mulatta
ENSGAFG00000021217	cmss1	77	63.366	ENSMNEG00000031315	CMSS1	79	63.285	Macaca_nemestrina
ENSGAFG00000021217	cmss1	77	63.366	ENSMLEG00000033660	CMSS1	79	63.285	Mandrillus_leucophaeus
ENSGAFG00000021217	cmss1	100	73.408	ENSMAMG00000017176	cmss1	92	73.408	Mastacembelus_armatus
ENSGAFG00000021217	cmss1	99	77.068	ENSMZEG00005021886	cmss1	92	76.952	Maylandia_zebra
ENSGAFG00000021217	cmss1	77	62.376	ENSMGAG00000014360	CMSS1	91	62.802	Meleagris_gallopavo
ENSGAFG00000021217	cmss1	77	41.089	ENSMAUG00000020609	Cmss1	68	41.748	Mesocricetus_auratus
ENSGAFG00000021217	cmss1	76	64.500	ENSMICG00000048977	CMSS1	80	64.734	Microcebus_murinus
ENSGAFG00000021217	cmss1	77	62.871	ENSMOCG00000021937	Cmss1	75	62.621	Microtus_ochrogaster
ENSGAFG00000021217	cmss1	97	67.829	ENSMMOG00000019794	cmss1	99	68.605	Mola_mola
ENSGAFG00000021217	cmss1	77	63.366	ENSMODG00000002275	CMSS1	80	62.085	Monodelphis_domestica
ENSGAFG00000021217	cmss1	98	70.677	ENSMALG00000004250	cmss1	92	70.221	Monopterus_albus
ENSGAFG00000021217	cmss1	77	63.861	MGP_CAROLIEiJ_G0020824	Cmss1	75	64.078	Mus_caroli
ENSGAFG00000021217	cmss1	77	63.366	ENSMUSG00000022748	Cmss1	75	63.592	Mus_musculus
ENSGAFG00000021217	cmss1	77	62.871	MGP_PahariEiJ_G0016524	Cmss1	75	63.107	Mus_pahari
ENSGAFG00000021217	cmss1	77	63.366	MGP_SPRETEiJ_G0021724	Cmss1	75	63.592	Mus_spretus
ENSGAFG00000021217	cmss1	75	62.814	ENSMPUG00000011324	CMSS1	80	63.107	Mustela_putorius_furo
ENSGAFG00000021217	cmss1	76	62.871	ENSMLUG00000001131	CMSS1	79	63.158	Myotis_lucifugus
ENSGAFG00000021217	cmss1	77	61.881	ENSNGAG00000020316	Cmss1	74	61.836	Nannospalax_galili
ENSGAFG00000021217	cmss1	99	75.564	ENSNBRG00000003095	cmss1	92	76.952	Neolamprologus_brichardi
ENSGAFG00000021217	cmss1	76	63.500	ENSNLEG00000034172	CMSS1	79	63.768	Nomascus_leucogenys
ENSGAFG00000021217	cmss1	77	53.960	ENSMEUG00000014505	CMSS1	93	53.081	Notamacropus_eugenii
ENSGAFG00000021217	cmss1	77	63.861	ENSOPRG00000002986	CMSS1	74	63.768	Ochotona_princeps
ENSGAFG00000021217	cmss1	76	62.000	ENSODEG00000005226	-	74	62.621	Octodon_degus
ENSGAFG00000021217	cmss1	77	60.891	ENSODEG00000003558	-	76	60.870	Octodon_degus
ENSGAFG00000021217	cmss1	77	55.446	ENSODEG00000009446	-	80	56.039	Octodon_degus
ENSGAFG00000021217	cmss1	98	46.923	ENSODEG00000001853	-	73	54.106	Octodon_degus
ENSGAFG00000021217	cmss1	97	75.093	ENSONIG00000006678	cmss1	100	77.186	Oreochromis_niloticus
ENSGAFG00000021217	cmss1	100	52.273	ENSOANG00000007529	CMSS1	91	61.611	Ornithorhynchus_anatinus
ENSGAFG00000021217	cmss1	77	63.366	ENSOCUG00000025366	CMSS1	75	63.285	Oryctolagus_cuniculus
ENSGAFG00000021217	cmss1	97	73.152	ENSORLG00000020340	cmss1	92	72.519	Oryzias_latipes
ENSGAFG00000021217	cmss1	98	63.953	ENSORLG00020012235	cmss1	99	62.977	Oryzias_latipes_hni
ENSGAFG00000021217	cmss1	99	63.806	ENSORLG00015015551	cmss1	100	63.433	Oryzias_latipes_hsok
ENSGAFG00000021217	cmss1	98	74.046	ENSOMEG00000012555	cmss1	92	74.157	Oryzias_melastigma
ENSGAFG00000021217	cmss1	77	64.356	ENSOGAG00000002045	CMSS1	91	64.251	Otolemur_garnettii
ENSGAFG00000021217	cmss1	77	64.532	ENSOARG00000017899	CMSS1	71	64.904	Ovis_aries
ENSGAFG00000021217	cmss1	77	63.366	ENSPPAG00000038515	CMSS1	76	63.285	Pan_paniscus
ENSGAFG00000021217	cmss1	76	64.000	ENSPPRG00000016767	CMSS1	74	64.251	Panthera_pardus
ENSGAFG00000021217	cmss1	76	63.500	ENSPTIG00000018274	CMSS1	74	63.768	Panthera_tigris_altaica
ENSGAFG00000021217	cmss1	77	63.366	ENSPTRG00000015157	CMSS1	84	63.285	Pan_troglodytes
ENSGAFG00000021217	cmss1	77	63.861	ENSPANG00000019980	CMSS1	82	63.768	Papio_anubis
ENSGAFG00000021217	cmss1	77	69.458	ENSPKIG00000012609	cmss1	76	70.048	Paramormyrops_kingsleyae
ENSGAFG00000021217	cmss1	77	63.861	ENSPSIG00000003849	CMSS1	90	63.768	Pelodiscus_sinensis
ENSGAFG00000021217	cmss1	77	76.471	ENSPMGG00000010286	cmss1	89	76.923	Periophthalmus_magnuspinnatus
ENSGAFG00000021217	cmss1	77	61.881	ENSPEMG00000016384	Cmss1	74	62.136	Peromyscus_maniculatus_bairdii
ENSGAFG00000021217	cmss1	77	51.471	ENSPMAG00000001146	cmss1	100	51.471	Petromyzon_marinus
ENSGAFG00000021217	cmss1	77	62.376	ENSPCIG00000015656	CMSS1	78	62.319	Phascolarctos_cinereus
ENSGAFG00000021217	cmss1	97	85.551	ENSPFOG00000016849	cmss1	94	86.667	Poecilia_formosa
ENSGAFG00000021217	cmss1	97	85.171	ENSPLAG00000008323	cmss1	94	86.296	Poecilia_latipinna
ENSGAFG00000021217	cmss1	97	85.551	ENSPMEG00000021020	cmss1	93	86.667	Poecilia_mexicana
ENSGAFG00000021217	cmss1	97	85.551	ENSPREG00000007618	cmss1	91	85.556	Poecilia_reticulata
ENSGAFG00000021217	cmss1	77	63.861	ENSPPYG00000013606	CMSS1	76	63.768	Pongo_abelii
ENSGAFG00000021217	cmss1	76	64.000	ENSPCOG00000020035	CMSS1	80	64.251	Propithecus_coquereli
ENSGAFG00000021217	cmss1	76	52.500	ENSPVAG00000017031	CMSS1	74	53.140	Pteropus_vampyrus
ENSGAFG00000021217	cmss1	89	76.667	ENSPNYG00000013428	cmss1	89	76.543	Pundamilia_nyererei
ENSGAFG00000021217	cmss1	98	55.515	ENSPNAG00000007912	cmss1	88	58.333	Pygocentrus_nattereri
ENSGAFG00000021217	cmss1	77	63.366	ENSRNOG00000027888	Cmss1	80	63.592	Rattus_norvegicus
ENSGAFG00000021217	cmss1	77	63.366	ENSRBIG00000037931	CMSS1	79	63.285	Rhinopithecus_bieti
ENSGAFG00000021217	cmss1	77	63.366	ENSRROG00000042910	CMSS1	79	63.285	Rhinopithecus_roxellana
ENSGAFG00000021217	cmss1	77	63.366	ENSSBOG00000030980	CMSS1	79	63.285	Saimiri_boliviensis_boliviensis
ENSGAFG00000021217	cmss1	77	63.366	ENSSHAG00000009321	CMSS1	82	63.285	Sarcophilus_harrisii
ENSGAFG00000021217	cmss1	77	72.906	ENSSFOG00015001509	cmss1	71	73.430	Scleropages_formosus
ENSGAFG00000021217	cmss1	96	71.538	ENSSMAG00000001653	cmss1	92	70.909	Scophthalmus_maximus
ENSGAFG00000021217	cmss1	98	75.188	ENSSDUG00000007719	cmss1	93	75.646	Seriola_dumerili
ENSGAFG00000021217	cmss1	98	72.325	ENSSLDG00000012300	cmss1	93	73.551	Seriola_lalandi_dorsalis
ENSGAFG00000021217	cmss1	77	52.970	ENSSARG00000003584	CMSS1	75	52.133	Sorex_araneus
ENSGAFG00000021217	cmss1	77	60.891	ENSSPUG00000003865	CMSS1	92	60.870	Sphenodon_punctatus
ENSGAFG00000021217	cmss1	100	77.903	ENSSPAG00000019182	cmss1	80	77.903	Stegastes_partitus
ENSGAFG00000021217	cmss1	76	62.500	ENSSSCG00000011970	CMSS1	74	62.802	Sus_scrofa
ENSGAFG00000021217	cmss1	77	60.891	ENSTGUG00000013635	CMSS1	90	61.353	Taeniopygia_guttata
ENSGAFG00000021217	cmss1	99	66.540	ENSTRUG00000015265	cmss1	73	77.778	Takifugu_rubripes
ENSGAFG00000021217	cmss1	77	71.429	ENSTNIG00000002880	cmss1	75	71.498	Tetraodon_nigroviridis
ENSGAFG00000021217	cmss1	77	45.050	ENSTBEG00000016722	CMSS1	74	45.894	Tupaia_belangeri
ENSGAFG00000021217	cmss1	77	61.386	ENSTTRG00000001562	CMSS1	74	61.836	Tursiops_truncatus
ENSGAFG00000021217	cmss1	77	63.861	ENSUAMG00000024209	CMSS1	93	63.768	Ursus_americanus
ENSGAFG00000021217	cmss1	77	63.366	ENSUMAG00000001983	CMSS1	81	62.085	Ursus_maritimus
ENSGAFG00000021217	cmss1	61	61.250	ENSVPAG00000000263	CMSS1	57	61.250	Vicugna_pacos
ENSGAFG00000021217	cmss1	77	61.881	ENSVVUG00000007776	-	81	61.836	Vulpes_vulpes
ENSGAFG00000021217	cmss1	76	62.500	ENSVVUG00000021647	-	84	62.802	Vulpes_vulpes
ENSGAFG00000021217	cmss1	98	52.652	ENSXETG00000011858	cmss1	74	60.870	Xenopus_tropicalis
ENSGAFG00000021217	cmss1	100	91.045	ENSXCOG00000018724	cmss1	92	91.045	Xiphophorus_couchianus
ENSGAFG00000021217	cmss1	99	91.011	ENSXMAG00000011243	cmss1	100	91.011	Xiphophorus_maculatus