EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000021570 (Gene tree)
Gene ID: -
Gene Symbol: si:ch1073-335m2.2
Alias: -
Full Name: si:ch1073-335m2.2
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 19663 bases
Position: chrNHOQ01002390.1:7359800-7379462
Accession: ZDB-GENE-081104-82
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000032048	RRM_1	PF00076.22	2.2e-42	1	3
ENSGAFP00000032048	RRM_1	PF00076.22	2.2e-42	2	3
ENSGAFP00000032048	RRM_1	PF00076.22	2.2e-42	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000032379	-	10999	-	ENSGAFP00000032048	3140 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000021570's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000021570's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000021570	si:ch1073-335m2.2	77	83.432	ENSG00000065526	SPEN	85	81.349	Homo_sapiens
ENSGAFG00000021570	si:ch1073-335m2.2	99	79.070	ENSAPOG00000009853	-	98	74.510	Acanthochromis_polyacanthus
ENSGAFG00000021570	si:ch1073-335m2.2	100	73.149	ENSAPOG00000011411	si:ch1073-335m2.2	100	73.297	Acanthochromis_polyacanthus
ENSGAFG00000021570	si:ch1073-335m2.2	77	84.024	ENSAMEG00000011817	SPEN	70	84.024	Ailuropoda_melanoleuca
ENSGAFG00000021570	si:ch1073-335m2.2	89	71.434	ENSAOCG00000008077	si:ch1073-335m2.2	99	71.488	Amphiprion_ocellaris
ENSGAFG00000021570	si:ch1073-335m2.2	100	78.378	ENSAOCG00000014505	-	98	74.510	Amphiprion_ocellaris
ENSGAFG00000021570	si:ch1073-335m2.2	100	73.220	ENSAPEG00000013515	si:ch1073-335m2.2	100	73.237	Amphiprion_percula
ENSGAFG00000021570	si:ch1073-335m2.2	100	78.378	ENSAPEG00000010288	-	98	74.510	Amphiprion_percula
ENSGAFG00000021570	si:ch1073-335m2.2	99	80.233	ENSATEG00000005627	-	98	75.000	Anabas_testudineus
ENSGAFG00000021570	si:ch1073-335m2.2	100	70.317	ENSATEG00000007674	si:ch1073-335m2.2	100	70.378	Anabas_testudineus
ENSGAFG00000021570	si:ch1073-335m2.2	95	84.615	ENSAPLG00000012618	SPEN	58	84.615	Anas_platyrhynchos
ENSGAFG00000021570	si:ch1073-335m2.2	72	84.615	ENSACAG00000013761	SPEN	80	84.615	Anolis_carolinensis
ENSGAFG00000021570	si:ch1073-335m2.2	76	83.432	ENSANAG00000034428	SPEN	71	83.432	Aotus_nancymaae
ENSGAFG00000021570	si:ch1073-335m2.2	100	69.631	ENSACLG00000021433	si:ch1073-335m2.2	100	69.538	Astatotilapia_calliptera
ENSGAFG00000021570	si:ch1073-335m2.2	99	77.540	ENSAMXG00000012485	spen	95	77.540	Astyanax_mexicanus
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	ENSBTAG00000018729	SPEN	86	84.024	Bos_taurus
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	ENSCJAG00000008527	SPEN	69	84.024	Callithrix_jacchus
ENSGAFG00000021570	si:ch1073-335m2.2	70	47.154	ENSCAFG00000016132	-	75	47.605	Canis_familiaris
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.615	ENSCHIG00000025070	SPEN	91	84.615	Capra_hircus
ENSGAFG00000021570	si:ch1073-335m2.2	64	84.024	ENSTSYG00000036016	SPEN	72	84.024	Carlito_syrichta
ENSGAFG00000021570	si:ch1073-335m2.2	66	84.024	ENSCCAG00000020258	SPEN	68	84.024	Cebus_capucinus
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	ENSCATG00000015079	SPEN	79	84.024	Cercocebus_atys
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	ENSCSAG00000000841	SPEN	77	84.024	Chlorocebus_sabaeus
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.615	ENSCPBG00000010477	SPEN	88	84.615	Chrysemys_picta_bellii
ENSGAFG00000021570	si:ch1073-335m2.2	85	84.024	ENSCANG00000034547	SPEN	80	84.024	Colobus_angolensis_palliatus
ENSGAFG00000021570	si:ch1073-335m2.2	99	79.651	ENSCSEG00000003915	-	96	62.992	Cynoglossus_semilaevis
ENSGAFG00000021570	si:ch1073-335m2.2	100	81.123	ENSCVAG00000009075	si:ch1073-335m2.2	100	81.217	Cyprinodon_variegatus
ENSGAFG00000021570	si:ch1073-335m2.2	53	72.414	ENSDARG00000074245	spen	100	82.222	Danio_rerio
ENSGAFG00000021570	si:ch1073-335m2.2	100	53.119	ENSDARG00000074332	si:ch1073-335m2.2	100	53.119	Danio_rerio
ENSGAFG00000021570	si:ch1073-335m2.2	85	84.024	ENSDORG00000023909	Spen	71	84.024	Dipodomys_ordii
ENSGAFG00000021570	si:ch1073-335m2.2	77	84.615	ENSEASG00005015911	SPEN	69	84.615	Equus_asinus_asinus
ENSGAFG00000021570	si:ch1073-335m2.2	77	84.615	ENSECAG00000008833	SPEN	69	84.615	Equus_caballus
ENSGAFG00000021570	si:ch1073-335m2.2	59	83.721	ENSEEUG00000010255	SPEN	58	83.721	Erinaceus_europaeus
ENSGAFG00000021570	si:ch1073-335m2.2	100	58.861	ENSELUG00000007726	si:ch1073-335m2.2	100	59.346	Esox_lucius
ENSGAFG00000021570	si:ch1073-335m2.2	54	84.024	ENSFALG00000003551	SPEN	80	84.024	Ficedula_albicollis
ENSGAFG00000021570	si:ch1073-335m2.2	100	81.676	ENSFHEG00000004544	si:ch1073-335m2.2	100	81.784	Fundulus_heteroclitus
ENSGAFG00000021570	si:ch1073-335m2.2	100	61.892	ENSGMOG00000008156	si:ch1073-335m2.2	100	61.812	Gadus_morhua
ENSGAFG00000021570	si:ch1073-335m2.2	57	84.024	ENSGALG00000036932	SPEN	84	84.024	Gallus_gallus
ENSGAFG00000021570	si:ch1073-335m2.2	100	66.995	ENSGACG00000001176	si:ch1073-335m2.2	100	67.055	Gasterosteus_aculeatus
ENSGAFG00000021570	si:ch1073-335m2.2	100	78.378	ENSGACG00000005341	-	70	77.540	Gasterosteus_aculeatus
ENSGAFG00000021570	si:ch1073-335m2.2	70	84.615	ENSGAGG00000020785	SPEN	65	84.615	Gopherus_agassizii
ENSGAFG00000021570	si:ch1073-335m2.2	77	83.432	ENSGGOG00000012041	SPEN	80	83.432	Gorilla_gorilla
ENSGAFG00000021570	si:ch1073-335m2.2	100	72.737	ENSHBUG00000023253	si:ch1073-335m2.2	100	69.717	Haplochromis_burtoni
ENSGAFG00000021570	si:ch1073-335m2.2	72	60.370	ENSHGLG00000019259	SPEN	71	60.370	Heterocephalus_glaber_female
ENSGAFG00000021570	si:ch1073-335m2.2	66	60.370	ENSHGLG00100019294	SPEN	69	60.370	Heterocephalus_glaber_male
ENSGAFG00000021570	si:ch1073-335m2.2	96	65.166	ENSHCOG00000006004	si:ch1073-335m2.2	99	65.134	Hippocampus_comes
ENSGAFG00000021570	si:ch1073-335m2.2	96	53.078	ENSIPUG00000018212	si:ch1073-335m2.2	99	53.373	Ictalurus_punctatus
ENSGAFG00000021570	si:ch1073-335m2.2	100	73.196	ENSIPUG00000021668	spen	64	73.196	Ictalurus_punctatus
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	ENSSTOG00000021428	SPEN	71	84.024	Ictidomys_tridecemlineatus
ENSGAFG00000021570	si:ch1073-335m2.2	86	83.432	ENSJJAG00000010882	Spen	92	83.432	Jaculus_jaculus
ENSGAFG00000021570	si:ch1073-335m2.2	100	73.451	ENSKMAG00000021725	si:ch1073-335m2.2	100	73.311	Kryptolebias_marmoratus
ENSGAFG00000021570	si:ch1073-335m2.2	99	79.070	ENSKMAG00000003882	-	97	66.667	Kryptolebias_marmoratus
ENSGAFG00000021570	si:ch1073-335m2.2	100	69.311	ENSLBEG00000020855	si:ch1073-335m2.2	100	69.311	Labrus_bergylta
ENSGAFG00000021570	si:ch1073-335m2.2	82	80.117	ENSLBEG00000019129	-	92	80.117	Labrus_bergylta
ENSGAFG00000021570	si:ch1073-335m2.2	100	43.909	ENSLACG00000003258	SPEN	88	84.024	Latimeria_chalumnae
ENSGAFG00000021570	si:ch1073-335m2.2	97	73.399	ENSLOCG00000007896	si:ch1073-335m2.2	74	75.862	Lepisosteus_oculatus
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	ENSMFAG00000041974	SPEN	79	84.024	Macaca_fascicularis
ENSGAFG00000021570	si:ch1073-335m2.2	85	84.024	ENSMMUG00000008026	SPEN	79	84.024	Macaca_mulatta
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	ENSMNEG00000042402	SPEN	79	84.024	Macaca_nemestrina
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	ENSMLEG00000039293	SPEN	81	84.024	Mandrillus_leucophaeus
ENSGAFG00000021570	si:ch1073-335m2.2	100	70.664	ENSMAMG00000023870	si:ch1073-335m2.2	100	70.795	Mastacembelus_armatus
ENSGAFG00000021570	si:ch1073-335m2.2	88	82.941	ENSMZEG00005021491	-	95	82.941	Maylandia_zebra
ENSGAFG00000021570	si:ch1073-335m2.2	100	69.609	ENSMZEG00005011762	si:ch1073-335m2.2	100	69.579	Maylandia_zebra
ENSGAFG00000021570	si:ch1073-335m2.2	66	84.024	ENSMAUG00000008318	Spen	74	84.024	Mesocricetus_auratus
ENSGAFG00000021570	si:ch1073-335m2.2	53	84.024	ENSMOCG00000016083	Spen	81	84.024	Microtus_ochrogaster
ENSGAFG00000021570	si:ch1073-335m2.2	100	69.040	ENSMMOG00000021742	si:ch1073-335m2.2	100	68.897	Mola_mola
ENSGAFG00000021570	si:ch1073-335m2.2	91	79.882	ENSMODG00000003411	SPEN	85	79.882	Monodelphis_domestica
ENSGAFG00000021570	si:ch1073-335m2.2	99	77.838	ENSMALG00000008625	-	97	73.529	Monopterus_albus
ENSGAFG00000021570	si:ch1073-335m2.2	79	68.398	ENSMUSG00000040761	Spen	74	74.752	Mus_musculus
ENSGAFG00000021570	si:ch1073-335m2.2	77	84.024	MGP_PahariEiJ_G0029076	Spen	80	84.024	Mus_pahari
ENSGAFG00000021570	si:ch1073-335m2.2	79	68.398	MGP_SPRETEiJ_G0027724	Spen	74	74.752	Mus_spretus
ENSGAFG00000021570	si:ch1073-335m2.2	75	84.024	ENSMPUG00000016317	SPEN	68	84.024	Mustela_putorius_furo
ENSGAFG00000021570	si:ch1073-335m2.2	91	73.632	ENSNGAG00000000641	Spen	82	73.632	Nannospalax_galili
ENSGAFG00000021570	si:ch1073-335m2.2	83	78.378	ENSNBRG00000022090	-	96	78.378	Neolamprologus_brichardi
ENSGAFG00000021570	si:ch1073-335m2.2	100	68.790	ENSNBRG00000005733	si:ch1073-335m2.2	100	68.698	Neolamprologus_brichardi
ENSGAFG00000021570	si:ch1073-335m2.2	85	83.432	ENSNLEG00000007652	SPEN	81	83.432	Nomascus_leucogenys
ENSGAFG00000021570	si:ch1073-335m2.2	76	78.947	ENSMEUG00000002422	SPEN	73	78.947	Notamacropus_eugenii
ENSGAFG00000021570	si:ch1073-335m2.2	58	84.024	ENSOPRG00000015800	SPEN	73	84.024	Ochotona_princeps
ENSGAFG00000021570	si:ch1073-335m2.2	94	59.630	ENSODEG00000016644	SPEN	58	60.206	Octodon_degus
ENSGAFG00000021570	si:ch1073-335m2.2	100	77.838	ENSONIG00000006573	-	98	77.838	Oreochromis_niloticus
ENSGAFG00000021570	si:ch1073-335m2.2	87	37.220	ENSORLG00000028894	-	97	66.667	Oryzias_latipes
ENSGAFG00000021570	si:ch1073-335m2.2	100	70.016	ENSORLG00000018414	si:ch1073-335m2.2	100	70.202	Oryzias_latipes
ENSGAFG00000021570	si:ch1073-335m2.2	87	37.146	ENSORLG00020007735	-	97	66.441	Oryzias_latipes_hni
ENSGAFG00000021570	si:ch1073-335m2.2	100	69.922	ENSORLG00020009351	si:ch1073-335m2.2	100	70.109	Oryzias_latipes_hni
ENSGAFG00000021570	si:ch1073-335m2.2	100	69.829	ENSORLG00015005537	si:ch1073-335m2.2	100	70.016	Oryzias_latipes_hsok
ENSGAFG00000021570	si:ch1073-335m2.2	91	73.529	ENSORLG00015022085	-	93	73.529	Oryzias_latipes_hsok
ENSGAFG00000021570	si:ch1073-335m2.2	100	70.459	ENSOMEG00000004509	si:ch1073-335m2.2	100	70.490	Oryzias_melastigma
ENSGAFG00000021570	si:ch1073-335m2.2	85	83.041	ENSOMEG00000007639	-	82	83.041	Oryzias_melastigma
ENSGAFG00000021570	si:ch1073-335m2.2	85	84.024	ENSOGAG00000025110	SPEN	69	84.024	Otolemur_garnettii
ENSGAFG00000021570	si:ch1073-335m2.2	76	83.432	ENSPPAG00000035690	SPEN	77	83.432	Pan_paniscus
ENSGAFG00000021570	si:ch1073-335m2.2	77	83.432	ENSPTRG00000000210	SPEN	77	83.432	Pan_troglodytes
ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	ENSPANG00000006293	SPEN	81	84.024	Papio_anubis
ENSGAFG00000021570	si:ch1073-335m2.2	92	92.857	ENSPKIG00000010492	si:ch1073-335m2.2	92	92.857	Paramormyrops_kingsleyae
ENSGAFG00000021570	si:ch1073-335m2.2	100	77.202	ENSPKIG00000002617	SPEN	91	67.170	Paramormyrops_kingsleyae
ENSGAFG00000021570	si:ch1073-335m2.2	70	84.615	ENSPSIG00000008026	SPEN	89	77.202	Pelodiscus_sinensis
ENSGAFG00000021570	si:ch1073-335m2.2	74	84.024	ENSPEMG00000022997	Spen	79	84.024	Peromyscus_maniculatus_bairdii
ENSGAFG00000021570	si:ch1073-335m2.2	100	93.989	ENSPFOG00000017986	si:ch1073-335m2.2	100	94.084	Poecilia_formosa
ENSGAFG00000021570	si:ch1073-335m2.2	100	94.265	ENSPLAG00000016625	si:ch1073-335m2.2	100	94.233	Poecilia_latipinna
ENSGAFG00000021570	si:ch1073-335m2.2	100	94.053	ENSPMEG00000002674	si:ch1073-335m2.2	100	94.147	Poecilia_mexicana
ENSGAFG00000021570	si:ch1073-335m2.2	100	95.125	ENSPREG00000005357	si:ch1073-335m2.2	100	95.283	Poecilia_reticulata
ENSGAFG00000021570	si:ch1073-335m2.2	77	83.432	ENSPPYG00000001834	SPEN	80	83.432	Pongo_abelii
ENSGAFG00000021570	si:ch1073-335m2.2	68	83.432	ENSPCAG00000009543	SPEN	65	83.432	Procavia_capensis
ENSGAFG00000021570	si:ch1073-335m2.2	77	80.588	ENSPCOG00000021735	SPEN	70	80.588	Propithecus_coquereli
ENSGAFG00000021570	si:ch1073-335m2.2	100	69.600	ENSPNYG00000009042	si:ch1073-335m2.2	100	69.508	Pundamilia_nyererei
ENSGAFG00000021570	si:ch1073-335m2.2	99	78.035	ENSPNAG00000020795	spen	92	72.222	Pygocentrus_nattereri
ENSGAFG00000021570	si:ch1073-335m2.2	100	54.933	ENSPNAG00000011452	si:ch1073-335m2.2	100	54.945	Pygocentrus_nattereri
ENSGAFG00000021570	si:ch1073-335m2.2	88	81.356	ENSRNOG00000033556	Spen	73	81.356	Rattus_norvegicus
ENSGAFG00000021570	si:ch1073-335m2.2	85	84.024	ENSRBIG00000039654	SPEN	80	84.024	Rhinopithecus_bieti
ENSGAFG00000021570	si:ch1073-335m2.2	85	84.024	ENSRROG00000035686	SPEN	80	84.024	Rhinopithecus_roxellana
ENSGAFG00000021570	si:ch1073-335m2.2	84	84.024	ENSSBOG00000028770	SPEN	79	84.024	Saimiri_boliviensis_boliviensis
ENSGAFG00000021570	si:ch1073-335m2.2	94	74.332	ENSSHAG00000004960	SPEN	99	68.030	Sarcophilus_harrisii
ENSGAFG00000021570	si:ch1073-335m2.2	87	84.211	ENSSFOG00015007131	si:ch1073-335m2.2	53	84.211	Scleropages_formosus
ENSGAFG00000021570	si:ch1073-335m2.2	99	86.391	ENSSFOG00015010267	si:ch1073-335m2.2	98	86.391	Scleropages_formosus
ENSGAFG00000021570	si:ch1073-335m2.2	99	79.070	ENSSMAG00000008996	-	98	74.510	Scophthalmus_maximus
ENSGAFG00000021570	si:ch1073-335m2.2	100	70.738	ENSSMAG00000000125	si:ch1073-335m2.2	100	70.694	Scophthalmus_maximus
ENSGAFG00000021570	si:ch1073-335m2.2	100	73.209	ENSSDUG00000008416	si:ch1073-335m2.2	100	73.218	Seriola_dumerili
ENSGAFG00000021570	si:ch1073-335m2.2	99	80.233	ENSSDUG00000003476	-	98	75.490	Seriola_dumerili
ENSGAFG00000021570	si:ch1073-335m2.2	99	79.459	ENSSLDG00000012950	-	98	75.490	Seriola_lalandi_dorsalis
ENSGAFG00000021570	si:ch1073-335m2.2	61	84.615	ENSSPUG00000001866	-	65	84.615	Sphenodon_punctatus
ENSGAFG00000021570	si:ch1073-335m2.2	100	73.510	ENSSPAG00000012454	si:ch1073-335m2.2	100	73.518	Stegastes_partitus
ENSGAFG00000021570	si:ch1073-335m2.2	99	82.456	ENSSPAG00000006014	-	98	82.456	Stegastes_partitus
ENSGAFG00000021570	si:ch1073-335m2.2	78	44.266	ENSSSCG00000034484	SPEN	74	47.335	Sus_scrofa
ENSGAFG00000021570	si:ch1073-335m2.2	87	63.526	ENSTRUG00000021008	si:ch1073-335m2.2	100	63.456	Takifugu_rubripes
ENSGAFG00000021570	si:ch1073-335m2.2	100	73.529	ENSTRUG00000024350	-	98	73.529	Takifugu_rubripes
ENSGAFG00000021570	si:ch1073-335m2.2	100	66.116	ENSTNIG00000014666	si:ch1073-335m2.2	100	66.106	Tetraodon_nigroviridis
ENSGAFG00000021570	si:ch1073-335m2.2	67	84.024	ENSTBEG00000003628	SPEN	59	84.024	Tupaia_belangeri
ENSGAFG00000021570	si:ch1073-335m2.2	63	84.024	ENSTTRG00000015704	SPEN	54	84.024	Tursiops_truncatus
ENSGAFG00000021570	si:ch1073-335m2.2	77	84.615	ENSUAMG00000009600	SPEN	78	84.615	Ursus_americanus
ENSGAFG00000021570	si:ch1073-335m2.2	76	84.615	ENSUMAG00000021641	SPEN	78	84.615	Ursus_maritimus
ENSGAFG00000021570	si:ch1073-335m2.2	77	84.024	ENSVVUG00000028951	SPEN	67	92.857	Vulpes_vulpes
ENSGAFG00000021570	si:ch1073-335m2.2	100	92.264	ENSXCOG00000004516	si:ch1073-335m2.2	100	92.137	Xiphophorus_couchianus
ENSGAFG00000021570	si:ch1073-335m2.2	99	81.287	ENSXMAG00000021384	-	97	81.287	Xiphophorus_maculatus
ENSGAFG00000021570	si:ch1073-335m2.2	100	96.285	ENSXMAG00000029887	si:ch1073-335m2.2	100	96.285	Xiphophorus_maculatus