EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000021691 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Plus strand
Length: 12648 bases
Position: chrNHOQ01001373.1:1499879-1512526
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000032220	EST1	PF10374.9	4.8e-24	1	1
ENSGAFP00000032220	EST1_DNA_bind	PF10373.9	2.7e-37	1	1
ENSGAFP00000032220	PIN_4	PF13638.6	3.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000032551	-	3114	-	ENSGAFP00000032220	1037 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000021691's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000021691's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000021691	smg5	95	67.412	ENSG00000198952	SMG5	86	75.566	Homo_sapiens
ENSGAFG00000021691	smg5	99	91.883	ENSAPOG00000019690	smg5	93	90.735	Acanthochromis_polyacanthus
ENSGAFG00000021691	smg5	94	65.815	ENSAMEG00000014458	SMG5	84	77.114	Ailuropoda_melanoleuca
ENSGAFG00000021691	smg5	100	77.545	ENSACIG00000001353	smg5	99	76.727	Amphilophus_citrinellus
ENSGAFG00000021691	smg5	99	91.054	ENSAOCG00000019483	smg5	93	91.054	Amphiprion_ocellaris
ENSGAFG00000021691	smg5	99	91.054	ENSAPEG00000022949	smg5	93	91.054	Amphiprion_percula
ENSGAFG00000021691	smg5	99	89.137	ENSATEG00000005348	smg5	93	89.137	Anabas_testudineus
ENSGAFG00000021691	smg5	98	57.919	ENSAPLG00000010263	SMG5	100	56.636	Anas_platyrhynchos
ENSGAFG00000021691	smg5	99	89.457	ENSACLG00000009311	smg5	93	89.457	Astatotilapia_calliptera
ENSGAFG00000021691	smg5	99	86.129	ENSAMXG00000024616	smg5	93	86.129	Astyanax_mexicanus
ENSGAFG00000021691	smg5	69	50.363	ENSBTAG00000021747	-	86	50.363	Bos_taurus
ENSGAFG00000021691	smg5	96	67.093	ENSBTAG00000009435	SMG5	50	51.705	Bos_taurus
ENSGAFG00000021691	smg5	95	66.773	ENSCAFG00000016839	SMG5	82	75.515	Canis_familiaris
ENSGAFG00000021691	smg5	95	66.773	ENSCAFG00020006061	SMG5	82	75.515	Canis_lupus_dingo
ENSGAFG00000021691	smg5	69	50.868	ENSCHIG00000006323	-	85	50.868	Capra_hircus
ENSGAFG00000021691	smg5	96	67.093	ENSCHIG00000007709	SMG5	50	51.515	Capra_hircus
ENSGAFG00000021691	smg5	96	67.093	ENSTSYG00000004099	SMG5	72	77.594	Carlito_syrichta
ENSGAFG00000021691	smg5	91	62.857	ENSCAPG00000003631	SMG5	92	50.958	Cavia_aperea
ENSGAFG00000021691	smg5	71	77.176	ENSCPOG00000015696	SMG5	73	75.682	Cavia_porcellus
ENSGAFG00000021691	smg5	95	67.412	ENSCATG00000030539	SMG5	50	53.096	Cercocebus_atys
ENSGAFG00000021691	smg5	94	57.670	ENSCPBG00000025848	SMG5	68	79.235	Chrysemys_picta_bellii
ENSGAFG00000021691	smg5	76	38.060	ENSCING00000008706	-	67	39.184	Ciona_intestinalis
ENSGAFG00000021691	smg5	97	68.051	ENSCGRG00001006336	Smg5	72	76.291	Cricetulus_griseus_chok1gshd
ENSGAFG00000021691	smg5	95	68.051	ENSCGRG00000005111	Smg5	72	76.413	Cricetulus_griseus_crigri
ENSGAFG00000021691	smg5	99	86.581	ENSCSEG00000014220	smg5	92	86.581	Cynoglossus_semilaevis
ENSGAFG00000021691	smg5	100	70.238	ENSCVAG00000000529	smg5	99	70.696	Cyprinodon_variegatus
ENSGAFG00000021691	smg5	99	86.319	ENSDARG00000041481	smg5	92	86.319	Danio_rerio
ENSGAFG00000021691	smg5	62	39.791	ENSDNOG00000039862	-	69	39.005	Dasypus_novemcinctus
ENSGAFG00000021691	smg5	86	78.836	ENSDNOG00000000051	SMG5	67	77.778	Dasypus_novemcinctus
ENSGAFG00000021691	smg5	96	67.093	ENSDORG00000010382	Smg5	50	53.700	Dipodomys_ordii
ENSGAFG00000021691	smg5	76	84.466	ENSETEG00000010336	SMG5	58	84.466	Echinops_telfairi
ENSGAFG00000021691	smg5	60	58.929	ENSEBUG00000003739	smg5	88	53.465	Eptatretus_burgeri
ENSGAFG00000021691	smg5	95	67.412	ENSEASG00005019122	SMG5	74	76.244	Equus_asinus_asinus
ENSGAFG00000021691	smg5	95	67.412	ENSECAG00000001389	SMG5	74	76.244	Equus_caballus
ENSGAFG00000021691	smg5	64	79.155	ENSEEUG00000012690	SMG5	67	78.249	Erinaceus_europaeus
ENSGAFG00000021691	smg5	99	85.350	ENSELUG00000012585	smg5	93	85.350	Esox_lucius
ENSGAFG00000021691	smg5	97	66.134	ENSFCAG00000011783	SMG5	86	75.342	Felis_catus
ENSGAFG00000021691	smg5	65	62.592	ENSFALG00000001166	-	98	58.860	Ficedula_albicollis
ENSGAFG00000021691	smg5	94	65.495	ENSFDAG00000017388	SMG5	52	52.662	Fukomys_damarensis
ENSGAFG00000021691	smg5	98	84.637	ENSFHEG00000013939	smg5	96	86.732	Fundulus_heteroclitus
ENSGAFG00000021691	smg5	100	83.591	ENSGMOG00000007310	smg5	93	83.591	Gadus_morhua
ENSGAFG00000021691	smg5	99	58.839	ENSGALG00000029918	-	99	57.965	Gallus_gallus
ENSGAFG00000021691	smg5	100	88.644	ENSGACG00000013142	smg5	93	88.644	Gasterosteus_aculeatus
ENSGAFG00000021691	smg5	99	58.639	ENSGAGG00000016131	SMG5	72	75.947	Gopherus_agassizii
ENSGAFG00000021691	smg5	95	67.412	ENSGGOG00000010932	SMG5	86	75.566	Gorilla_gorilla
ENSGAFG00000021691	smg5	99	90.096	ENSHBUG00000008654	smg5	93	90.096	Haplochromis_burtoni
ENSGAFG00000021691	smg5	96	66.134	ENSHGLG00000019152	SMG5	93	74.718	Heterocephalus_glaber_female
ENSGAFG00000021691	smg5	86	70.093	ENSHGLG00100015948	SMG5	92	74.715	Heterocephalus_glaber_male
ENSGAFG00000021691	smg5	93	67.974	ENSHCOG00000010229	smg5	93	82.410	Hippocampus_comes
ENSGAFG00000021691	smg5	99	83.387	ENSIPUG00000006624	Smg5	92	83.387	Ictalurus_punctatus
ENSGAFG00000021691	smg5	96	67.093	ENSSTOG00000001780	SMG5	86	74.944	Ictidomys_tridecemlineatus
ENSGAFG00000021691	smg5	96	68.051	ENSJJAG00000022763	Smg5	73	74.434	Jaculus_jaculus
ENSGAFG00000021691	smg5	99	91.374	ENSKMAG00000014586	smg5	93	91.374	Kryptolebias_marmoratus
ENSGAFG00000021691	smg5	99	90.415	ENSLBEG00000002145	smg5	93	90.415	Labrus_bergylta
ENSGAFG00000021691	smg5	99	51.908	ENSLACG00000010521	SMG5	99	52.538	Latimeria_chalumnae
ENSGAFG00000021691	smg5	99	69.643	ENSLOCG00000008380	smg5	90	80.597	Lepisosteus_oculatus
ENSGAFG00000021691	smg5	95	67.412	ENSLAFG00000006241	SMG5	82	75.399	Loxodonta_africana
ENSGAFG00000021691	smg5	87	78.588	ENSMMUG00000000090	SMG5	87	75.737	Macaca_mulatta
ENSGAFG00000021691	smg5	95	67.412	ENSMLEG00000041192	SMG5	93	66.290	Mandrillus_leucophaeus
ENSGAFG00000021691	smg5	99	89.137	ENSMAMG00000010683	smg5	95	89.137	Mastacembelus_armatus
ENSGAFG00000021691	smg5	61	91.234	ENSMZEG00005016543	smg5	90	87.616	Maylandia_zebra
ENSGAFG00000021691	smg5	100	73.352	ENSMZEG00005015815	smg5	99	73.443	Maylandia_zebra
ENSGAFG00000021691	smg5	95	68.690	ENSMAUG00000010381	Smg5	72	76.056	Mesocricetus_auratus
ENSGAFG00000021691	smg5	96	68.371	ENSMOCG00000016590	Smg5	73	74.943	Microtus_ochrogaster
ENSGAFG00000021691	smg5	99	89.935	ENSMMOG00000017199	smg5	93	89.935	Mola_mola
ENSGAFG00000021691	smg5	59	41.530	ENSMODG00000004532	-	72	40.000	Monodelphis_domestica
ENSGAFG00000021691	smg5	62	34.766	ENSMODG00000010675	-	80	33.019	Monodelphis_domestica
ENSGAFG00000021691	smg5	70	34.615	ENSMODG00000004511	-	72	34.615	Monodelphis_domestica
ENSGAFG00000021691	smg5	70	33.871	ENSMODG00000004735	-	82	33.871	Monodelphis_domestica
ENSGAFG00000021691	smg5	99	89.137	ENSMALG00000010375	smg5	93	89.137	Monopterus_albus
ENSGAFG00000021691	smg5	99	68.371	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSGAFG00000021691	smg5	96	68.690	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSGAFG00000021691	smg5	96	68.371	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSGAFG00000021691	smg5	96	68.371	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSGAFG00000021691	smg5	90	65.815	ENSMPUG00000004546	SMG5	85	73.475	Mustela_putorius_furo
ENSGAFG00000021691	smg5	96	66.454	ENSMLUG00000008518	SMG5	82	76.430	Myotis_lucifugus
ENSGAFG00000021691	smg5	69	49.877	ENSNGAG00000012101	-	70	49.630	Nannospalax_galili
ENSGAFG00000021691	smg5	95	67.732	ENSNGAG00000020706	Smg5	84	77.176	Nannospalax_galili
ENSGAFG00000021691	smg5	97	73.955	ENSNBRG00000004332	smg5	97	73.483	Neolamprologus_brichardi
ENSGAFG00000021691	smg5	95	67.412	ENSNLEG00000012439	SMG5	86	75.792	Nomascus_leucogenys
ENSGAFG00000021691	smg5	99	57.842	ENSMEUG00000012834	SMG5	50	50.857	Notamacropus_eugenii
ENSGAFG00000021691	smg5	95	66.454	ENSOPRG00000009152	SMG5	72	77.622	Ochotona_princeps
ENSGAFG00000021691	smg5	95	67.412	ENSODEG00000012237	SMG5	86	75.847	Octodon_degus
ENSGAFG00000021691	smg5	99	91.883	ENSONIG00000008632	smg5	93	90.735	Oreochromis_niloticus
ENSGAFG00000021691	smg5	88	39.312	ENSOCUG00000023338	-	84	46.020	Oryctolagus_cuniculus
ENSGAFG00000021691	smg5	94	66.454	ENSOCUG00000012886	SMG5	73	76.485	Oryctolagus_cuniculus
ENSGAFG00000021691	smg5	99	87.540	ENSORLG00000016239	smg5	92	87.540	Oryzias_latipes
ENSGAFG00000021691	smg5	99	88.179	ENSORLG00020013127	smg5	92	88.179	Oryzias_latipes_hni
ENSGAFG00000021691	smg5	99	87.859	ENSORLG00015019014	smg5	92	87.859	Oryzias_latipes_hsok
ENSGAFG00000021691	smg5	82	84.091	ENSOMEG00000021330	smg5	84	84.091	Oryzias_melastigma
ENSGAFG00000021691	smg5	95	65.815	ENSOGAG00000004966	SMG5	50	52.281	Otolemur_garnettii
ENSGAFG00000021691	smg5	96	67.093	ENSOARG00000005778	SMG5	50	51.515	Ovis_aries
ENSGAFG00000021691	smg5	70	51.090	ENSOARG00000011963	-	86	51.090	Ovis_aries
ENSGAFG00000021691	smg5	95	67.412	ENSPPAG00000011996	SMG5	86	75.339	Pan_paniscus
ENSGAFG00000021691	smg5	95	66.134	ENSPPRG00000011901	SMG5	86	75.179	Panthera_pardus
ENSGAFG00000021691	smg5	97	58.492	ENSPTIG00000007892	SMG5	92	72.967	Panthera_tigris_altaica
ENSGAFG00000021691	smg5	95	67.412	ENSPTRG00000049282	-	86	75.339	Pan_troglodytes
ENSGAFG00000021691	smg5	95	67.412	ENSPTRG00000023925	SMG5	86	75.339	Pan_troglodytes
ENSGAFG00000021691	smg5	100	69.444	ENSPKIG00000009402	smg5	93	82.428	Paramormyrops_kingsleyae
ENSGAFG00000021691	smg5	98	59.450	ENSPSIG00000015198	SMG5	71	79.024	Pelodiscus_sinensis
ENSGAFG00000021691	smg5	99	78.797	ENSPMGG00000010465	smg5	100	67.628	Periophthalmus_magnuspinnatus
ENSGAFG00000021691	smg5	97	67.732	ENSPEMG00000001819	Smg5	72	76.526	Peromyscus_maniculatus_bairdii
ENSGAFG00000021691	smg5	68	62.899	ENSPMAG00000000410	smg5	81	63.725	Petromyzon_marinus
ENSGAFG00000021691	smg5	99	96.486	ENSPFOG00000010191	smg5	93	96.486	Poecilia_formosa
ENSGAFG00000021691	smg5	99	96.667	ENSPLAG00000009332	smg5	93	96.667	Poecilia_latipinna
ENSGAFG00000021691	smg5	99	96.805	ENSPMEG00000014105	smg5	93	96.805	Poecilia_mexicana
ENSGAFG00000021691	smg5	99	97.361	ENSPREG00000017713	smg5	93	97.361	Poecilia_reticulata
ENSGAFG00000021691	smg5	95	67.412	ENSPPYG00000000723	SMG5	86	75.566	Pongo_abelii
ENSGAFG00000021691	smg5	72	78.333	ENSPCAG00000008412	SMG5	54	78.333	Procavia_capensis
ENSGAFG00000021691	smg5	95	67.093	ENSPCOG00000004741	SMG5	73	76.310	Propithecus_coquereli
ENSGAFG00000021691	smg5	88	64.884	ENSPVAG00000016748	SMG5	83	64.856	Pteropus_vampyrus
ENSGAFG00000021691	smg5	99	90.096	ENSPNYG00000013397	smg5	93	90.096	Pundamilia_nyererei
ENSGAFG00000021691	smg5	99	85.623	ENSPNAG00000028363	smg5	92	85.623	Pygocentrus_nattereri
ENSGAFG00000021691	smg5	96	68.051	ENSRNOG00000019590	Smg5	73	74.773	Rattus_norvegicus
ENSGAFG00000021691	smg5	69	41.404	ENSSHAG00000009572	-	72	40.758	Sarcophilus_harrisii
ENSGAFG00000021691	smg5	98	57.077	ENSSHAG00000014163	SMG5	52	51.036	Sarcophilus_harrisii
ENSGAFG00000021691	smg5	69	35.821	ENSSHAG00000000561	-	78	35.821	Sarcophilus_harrisii
ENSGAFG00000021691	smg5	99	84.665	ENSSFOG00015024175	smg5	92	84.665	Scleropages_formosus
ENSGAFG00000021691	smg5	99	88.818	ENSSMAG00000013059	smg5	92	88.818	Scophthalmus_maximus
ENSGAFG00000021691	smg5	99	91.054	ENSSDUG00000007122	smg5	92	91.054	Seriola_dumerili
ENSGAFG00000021691	smg5	99	92.857	ENSSLDG00000011418	smg5	92	91.693	Seriola_lalandi_dorsalis
ENSGAFG00000021691	smg5	86	69.626	ENSSARG00000012484	SMG5	69	69.626	Sorex_araneus
ENSGAFG00000021691	smg5	94	56.994	ENSSPUG00000002260	SMG5	70	75.515	Sphenodon_punctatus
ENSGAFG00000021691	smg5	99	90.096	ENSSPAG00000014266	smg5	93	90.096	Stegastes_partitus
ENSGAFG00000021691	smg5	96	67.412	ENSSSCG00000006490	-	74	76.018	Sus_scrofa
ENSGAFG00000021691	smg5	94	56.471	ENSSSCG00000039308	-	92	54.338	Sus_scrofa
ENSGAFG00000021691	smg5	99	59.511	ENSTGUG00000003748	-	73	76.802	Taeniopygia_guttata
ENSGAFG00000021691	smg5	99	86.624	ENSTRUG00000012580	smg5	93	86.624	Takifugu_rubripes
ENSGAFG00000021691	smg5	99	86.306	ENSTNIG00000010303	smg5	93	86.306	Tetraodon_nigroviridis
ENSGAFG00000021691	smg5	50	83.744	ENSTBEG00000002777	SMG5	50	83.744	Tupaia_belangeri
ENSGAFG00000021691	smg5	97	61.661	ENSTTRG00000001401	SMG5	74	70.136	Tursiops_truncatus
ENSGAFG00000021691	smg5	95	66.454	ENSUAMG00000013721	SMG5	86	75.229	Ursus_americanus
ENSGAFG00000021691	smg5	91	74.272	ENSUMAG00000018041	SMG5	95	72.979	Ursus_maritimus
ENSGAFG00000021691	smg5	84	70.297	ENSVPAG00000009446	SMG5	86	66.190	Vicugna_pacos
ENSGAFG00000021691	smg5	95	66.773	ENSVVUG00000005887	SMG5	81	77.251	Vulpes_vulpes
ENSGAFG00000021691	smg5	75	60.968	ENSXETG00000033791	SMG5	87	60.968	Xenopus_tropicalis
ENSGAFG00000021691	smg5	91	100.000	ENSXCOG00000004379	smg5	100	100.000	Xiphophorus_couchianus
ENSGAFG00000021691	smg5	99	97.778	ENSXMAG00000013499	smg5	93	97.778	Xiphophorus_maculatus