EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAFG00000021890 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Gambusia_affinis
Status: putative
Strand: Minus strand
Length: 4915 bases
Position: chrNHOQ01001396.1:3868061-3872975
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAFP00000032501	HVSL	PF09749.9	7.3e-65	1	1
ENSGAFP00000032500	HVSL	PF09749.9	3.7e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAFT00000032832	-	1702	-	ENSGAFP00000032500	288 (aa)	-	-
ENSGAFT00000032833	-	1669	-	ENSGAFP00000032501	277 (aa)	-	-

Gene Model

Click here to download ENSGAFG00000021890's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAFG00000021890's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAFG00000021890	usb1	87	50.206	ENSG00000103005	USB1	100	53.023	Homo_sapiens
ENSGAFG00000021890	usb1	99	71.579	ENSAPOG00000011942	usb1	100	71.579	Acanthochromis_polyacanthus
ENSGAFG00000021890	usb1	84	51.709	ENSAMEG00000017205	USB1	98	49.091	Ailuropoda_melanoleuca
ENSGAFG00000021890	usb1	87	70.782	ENSACIG00000012234	usb1	100	67.509	Amphilophus_citrinellus
ENSGAFG00000021890	usb1	99	71.134	ENSAOCG00000014831	usb1	99	73.077	Amphiprion_ocellaris
ENSGAFG00000021890	usb1	99	70.447	ENSAPEG00000000296	usb1	99	72.378	Amphiprion_percula
ENSGAFG00000021890	usb1	99	72.598	ENSATEG00000009348	usb1	99	72.598	Anabas_testudineus
ENSGAFG00000021890	usb1	81	55.310	ENSAPLG00000002756	USB1	100	55.310	Anas_platyrhynchos
ENSGAFG00000021890	usb1	82	51.965	ENSACAG00000015481	USB1	100	51.965	Anolis_carolinensis
ENSGAFG00000021890	usb1	82	51.754	ENSANAG00000035640	USB1	98	47.653	Aotus_nancymaae
ENSGAFG00000021890	usb1	94	70.498	ENSACLG00000020586	usb1	100	69.825	Astatotilapia_calliptera
ENSGAFG00000021890	usb1	81	64.889	ENSAMXG00000040146	usb1	95	55.782	Astyanax_mexicanus
ENSGAFG00000021890	usb1	99	48.014	ENSBTAG00000015758	USB1	98	48.014	Bos_taurus
ENSGAFG00000021890	usb1	82	52.632	ENSCJAG00000011733	USB1	98	48.014	Callithrix_jacchus
ENSGAFG00000021890	usb1	99	46.350	ENSCAFG00000008556	USB1	71	47.826	Canis_familiaris
ENSGAFG00000021890	usb1	99	48.175	ENSCAFG00020009263	USB1	98	48.175	Canis_lupus_dingo
ENSGAFG00000021890	usb1	99	48.364	ENSCHIG00000024290	USB1	98	48.364	Capra_hircus
ENSGAFG00000021890	usb1	88	46.341	ENSTSYG00000006997	USB1	98	48.364	Carlito_syrichta
ENSGAFG00000021890	usb1	81	42.667	ENSCAPG00000009057	USB1	96	42.667	Cavia_aperea
ENSGAFG00000021890	usb1	99	48.727	ENSCPOG00000014325	USB1	98	48.727	Cavia_porcellus
ENSGAFG00000021890	usb1	82	52.193	ENSCCAG00000022132	USB1	98	48.014	Cebus_capucinus
ENSGAFG00000021890	usb1	87	50.617	ENSCATG00000032174	USB1	98	48.014	Cercocebus_atys
ENSGAFG00000021890	usb1	62	51.445	ENSCLAG00000007363	USB1	87	53.595	Chinchilla_lanigera
ENSGAFG00000021890	usb1	87	50.617	ENSCSAG00000004783	USB1	98	48.364	Chlorocebus_sabaeus
ENSGAFG00000021890	usb1	82	55.263	ENSCPBG00000026943	USB1	98	50.890	Chrysemys_picta_bellii
ENSGAFG00000021890	usb1	82	32.794	ENSCING00000011490	-	87	32.245	Ciona_intestinalis
ENSGAFG00000021890	usb1	81	34.298	ENSCSAVG00000000894	-	91	30.714	Ciona_savignyi
ENSGAFG00000021890	usb1	82	52.863	ENSCANG00000037135	USB1	98	47.826	Colobus_angolensis_palliatus
ENSGAFG00000021890	usb1	99	50.545	ENSCGRG00001011243	USB1	98	50.545	Cricetulus_griseus_chok1gshd
ENSGAFG00000021890	usb1	99	50.545	ENSCGRG00000013252	USB1	98	50.545	Cricetulus_griseus_crigri
ENSGAFG00000021890	usb1	99	67.870	ENSCSEG00000013881	usb1	99	67.870	Cynoglossus_semilaevis
ENSGAFG00000021890	usb1	81	83.260	ENSCVAG00000009252	usb1	97	83.260	Cyprinodon_variegatus
ENSGAFG00000021890	usb1	85	58.228	ENSDARG00000003841	usb1	100	53.901	Danio_rerio
ENSGAFG00000021890	usb1	99	47.464	ENSDORG00000001888	Usb1	98	48.913	Dipodomys_ordii
ENSGAFG00000021890	usb1	77	43.458	FBgn0037713	CG16790	81	42.254	Drosophila_melanogaster
ENSGAFG00000021890	usb1	99	42.029	ENSETEG00000019682	USB1	98	42.029	Echinops_telfairi
ENSGAFG00000021890	usb1	94	41.219	ENSEBUG00000005889	usb1	98	39.423	Eptatretus_burgeri
ENSGAFG00000021890	usb1	99	47.636	ENSEASG00005005484	USB1	98	47.636	Equus_asinus_asinus
ENSGAFG00000021890	usb1	99	47.273	ENSECAG00000019493	USB1	90	47.273	Equus_caballus
ENSGAFG00000021890	usb1	62	48.555	ENSEEUG00000000154	USB1	58	49.673	Erinaceus_europaeus
ENSGAFG00000021890	usb1	91	60.870	ENSELUG00000010974	usb1	100	59.783	Esox_lucius
ENSGAFG00000021890	usb1	84	50.000	ENSFCAG00000002693	USB1	98	46.931	Felis_catus
ENSGAFG00000021890	usb1	82	54.585	ENSFALG00000006876	USB1	98	49.819	Ficedula_albicollis
ENSGAFG00000021890	usb1	99	46.909	ENSFDAG00000010052	USB1	98	46.909	Fukomys_damarensis
ENSGAFG00000021890	usb1	88	82.787	ENSFHEG00000012334	usb1	98	82.787	Fundulus_heteroclitus
ENSGAFG00000021890	usb1	81	70.536	ENSGMOG00000004228	usb1	100	70.536	Gadus_morhua
ENSGAFG00000021890	usb1	81	54.018	ENSGALG00000035604	USB1	98	49.091	Gallus_gallus
ENSGAFG00000021890	usb1	99	68.231	ENSGACG00000003257	usb1	99	68.592	Gasterosteus_aculeatus
ENSGAFG00000021890	usb1	99	53.455	ENSGAGG00000022572	USB1	98	53.455	Gopherus_agassizii
ENSGAFG00000021890	usb1	87	50.617	ENSGGOG00000017147	USB1	98	48.375	Gorilla_gorilla
ENSGAFG00000021890	usb1	94	70.498	ENSHBUG00000009823	usb1	100	70.070	Haplochromis_burtoni
ENSGAFG00000021890	usb1	99	46.831	ENSHGLG00000016078	USB1	96	46.831	Heterocephalus_glaber_female
ENSGAFG00000021890	usb1	99	46.831	ENSHGLG00100005562	USB1	96	46.831	Heterocephalus_glaber_male
ENSGAFG00000021890	usb1	79	72.018	ENSHCOG00000015633	usb1	99	64.234	Hippocampus_comes
ENSGAFG00000021890	usb1	99	53.898	ENSIPUG00000008601	usb1	100	55.363	Ictalurus_punctatus
ENSGAFG00000021890	usb1	99	48.736	ENSSTOG00000007548	USB1	98	49.275	Ictidomys_tridecemlineatus
ENSGAFG00000021890	usb1	99	49.091	ENSJJAG00000021859	Usb1	98	49.091	Jaculus_jaculus
ENSGAFG00000021890	usb1	94	75.385	ENSKMAG00000007200	usb1	99	73.684	Kryptolebias_marmoratus
ENSGAFG00000021890	usb1	87	68.313	ENSLBEG00000008452	usb1	86	64.706	Labrus_bergylta
ENSGAFG00000021890	usb1	78	52.586	ENSLACG00000000105	USB1	86	52.140	Latimeria_chalumnae
ENSGAFG00000021890	usb1	95	53.558	ENSLOCG00000000465	usb1	100	51.761	Lepisosteus_oculatus
ENSGAFG00000021890	usb1	99	39.161	ENSLAFG00000002267	USB1	98	39.161	Loxodonta_africana
ENSGAFG00000021890	usb1	87	50.617	ENSMFAG00000003926	USB1	98	48.014	Macaca_fascicularis
ENSGAFG00000021890	usb1	87	50.617	ENSMMUG00000022669	USB1	98	48.014	Macaca_mulatta
ENSGAFG00000021890	usb1	87	50.206	ENSMNEG00000042487	USB1	98	47.653	Macaca_nemestrina
ENSGAFG00000021890	usb1	87	50.617	ENSMLEG00000028756	USB1	98	48.014	Mandrillus_leucophaeus
ENSGAFG00000021890	usb1	99	74.552	ENSMAMG00000015092	usb1	99	74.552	Mastacembelus_armatus
ENSGAFG00000021890	usb1	94	70.498	ENSMZEG00005010008	usb1	100	70.070	Maylandia_zebra
ENSGAFG00000021890	usb1	99	49.455	ENSMAUG00000007832	Usb1	98	49.455	Mesocricetus_auratus
ENSGAFG00000021890	usb1	82	52.632	ENSMICG00000004900	USB1	98	49.818	Microcebus_murinus
ENSGAFG00000021890	usb1	99	50.909	ENSMOCG00000022647	Usb1	98	50.909	Microtus_ochrogaster
ENSGAFG00000021890	usb1	88	71.605	ENSMMOG00000000490	usb1	99	67.273	Mola_mola
ENSGAFG00000021890	usb1	78	54.128	ENSMODG00000014067	USB1	99	50.000	Monodelphis_domestica
ENSGAFG00000021890	usb1	90	73.494	ENSMALG00000005930	usb1	100	69.965	Monopterus_albus
ENSGAFG00000021890	usb1	99	49.818	MGP_CAROLIEiJ_G0031421	Usb1	99	50.442	Mus_caroli
ENSGAFG00000021890	usb1	99	49.455	ENSMUSG00000031792	Usb1	99	50.442	Mus_musculus
ENSGAFG00000021890	usb1	82	53.947	MGP_PahariEiJ_G0023019	Usb1	100	51.695	Mus_pahari
ENSGAFG00000021890	usb1	99	49.818	MGP_SPRETEiJ_G0032540	Usb1	98	49.818	Mus_spretus
ENSGAFG00000021890	usb1	84	50.427	ENSMPUG00000004684	USB1	94	47.636	Mustela_putorius_furo
ENSGAFG00000021890	usb1	82	53.070	ENSMLUG00000007400	USB1	98	52.155	Myotis_lucifugus
ENSGAFG00000021890	usb1	82	53.509	ENSNGAG00000009703	Usb1	98	50.181	Nannospalax_galili
ENSGAFG00000021890	usb1	94	64.368	ENSNBRG00000008747	usb1	100	72.093	Neolamprologus_brichardi
ENSGAFG00000021890	usb1	75	53.110	ENSNLEG00000003340	USB1	96	48.450	Nomascus_leucogenys
ENSGAFG00000021890	usb1	99	48.375	ENSODEG00000016214	USB1	98	48.736	Octodon_degus
ENSGAFG00000021890	usb1	99	70.922	ENSONIG00000011063	usb1	100	70.922	Oreochromis_niloticus
ENSGAFG00000021890	usb1	81	51.111	ENSOANG00000012118	USB1	94	51.111	Ornithorhynchus_anatinus
ENSGAFG00000021890	usb1	99	71.739	ENSORLG00000012479	usb1	100	71.739	Oryzias_latipes
ENSGAFG00000021890	usb1	90	72.800	ENSORLG00020018671	usb1	100	69.928	Oryzias_latipes_hni
ENSGAFG00000021890	usb1	94	71.815	ENSORLG00015009679	usb1	100	71.377	Oryzias_latipes_hsok
ENSGAFG00000021890	usb1	86	76.371	ENSOMEG00000012930	usb1	100	71.326	Oryzias_melastigma
ENSGAFG00000021890	usb1	87	47.737	ENSOGAG00000003273	USB1	98	46.909	Otolemur_garnettii
ENSGAFG00000021890	usb1	90	49.200	ENSOARG00000001107	USB1	95	49.200	Ovis_aries
ENSGAFG00000021890	usb1	87	50.206	ENSPPAG00000042137	USB1	98	48.014	Pan_paniscus
ENSGAFG00000021890	usb1	84	49.573	ENSPPRG00000024797	USB1	98	47.273	Panthera_pardus
ENSGAFG00000021890	usb1	84	49.145	ENSPTIG00000007506	USB1	98	46.209	Panthera_tigris_altaica
ENSGAFG00000021890	usb1	82	49.123	ENSPTRG00000008172	USB1	100	53.488	Pan_troglodytes
ENSGAFG00000021890	usb1	87	50.617	ENSPANG00000025138	USB1	98	48.014	Papio_anubis
ENSGAFG00000021890	usb1	83	64.224	ENSPKIG00000015109	usb1	99	55.853	Paramormyrops_kingsleyae
ENSGAFG00000021890	usb1	82	44.681	ENSPSIG00000004305	USB1	100	45.374	Pelodiscus_sinensis
ENSGAFG00000021890	usb1	81	66.368	ENSPMGG00000017725	usb1	98	58.394	Periophthalmus_magnuspinnatus
ENSGAFG00000021890	usb1	99	48.746	ENSPEMG00000016183	Usb1	98	48.746	Peromyscus_maniculatus_bairdii
ENSGAFG00000021890	usb1	78	52.941	ENSPMAG00000000462	usb1	92	52.941	Petromyzon_marinus
ENSGAFG00000021890	usb1	100	95.683	ENSPFOG00000011130	usb1	100	95.683	Poecilia_formosa
ENSGAFG00000021890	usb1	100	94.604	ENSPLAG00000009820	usb1	100	94.604	Poecilia_latipinna
ENSGAFG00000021890	usb1	100	96.043	ENSPMEG00000006402	usb1	100	96.043	Poecilia_mexicana
ENSGAFG00000021890	usb1	88	94.672	ENSPREG00000001047	usb1	99	94.672	Poecilia_reticulata
ENSGAFG00000021890	usb1	82	47.391	ENSPPYG00000007401	USB1	98	45.455	Pongo_abelii
ENSGAFG00000021890	usb1	82	51.754	ENSPCOG00000022612	USB1	98	48.727	Propithecus_coquereli
ENSGAFG00000021890	usb1	99	46.909	ENSPVAG00000004613	USB1	98	46.909	Pteropus_vampyrus
ENSGAFG00000021890	usb1	99	66.202	ENSPNYG00000022262	usb1	100	69.718	Pundamilia_nyererei
ENSGAFG00000021890	usb1	92	58.984	ENSPNAG00000011736	usb1	100	54.882	Pygocentrus_nattereri
ENSGAFG00000021890	usb1	99	49.818	ENSRNOG00000013216	Usb1	98	49.818	Rattus_norvegicus
ENSGAFG00000021890	usb1	82	49.561	ENSRBIG00000044466	USB1	100	53.488	Rhinopithecus_bieti
ENSGAFG00000021890	usb1	82	52.632	ENSRROG00000029211	USB1	98	49.091	Rhinopithecus_roxellana
ENSGAFG00000021890	usb1	82	52.632	ENSSBOG00000029362	USB1	98	48.375	Saimiri_boliviensis_boliviensis
ENSGAFG00000021890	usb1	78	51.376	ENSSHAG00000006993	USB1	98	49.194	Sarcophilus_harrisii
ENSGAFG00000021890	usb1	93	59.542	ENSSFOG00015023663	usb1	91	57.785	Scleropages_formosus
ENSGAFG00000021890	usb1	99	67.568	ENSSMAG00000015834	usb1	100	67.568	Scophthalmus_maximus
ENSGAFG00000021890	usb1	81	79.111	ENSSDUG00000002949	usb1	100	69.534	Seriola_dumerili
ENSGAFG00000021890	usb1	91	75.494	ENSSLDG00000014174	usb1	100	73.310	Seriola_lalandi_dorsalis
ENSGAFG00000021890	usb1	76	55.924	ENSSPUG00000006741	USB1	99	55.924	Sphenodon_punctatus
ENSGAFG00000021890	usb1	99	72.535	ENSSPAG00000007484	usb1	99	72.535	Stegastes_partitus
ENSGAFG00000021890	usb1	99	49.458	ENSSSCG00000002807	USB1	98	49.819	Sus_scrofa
ENSGAFG00000021890	usb1	76	56.398	ENSTGUG00000004792	USB1	98	49.097	Taeniopygia_guttata
ENSGAFG00000021890	usb1	99	67.273	ENSTRUG00000021069	usb1	99	67.273	Takifugu_rubripes
ENSGAFG00000021890	usb1	99	58.909	ENSTNIG00000000626	usb1	98	58.909	Tetraodon_nigroviridis
ENSGAFG00000021890	usb1	81	38.222	ENSTBEG00000001507	USB1	97	38.222	Tupaia_belangeri
ENSGAFG00000021890	usb1	84	51.709	ENSUAMG00000016823	USB1	98	48.014	Ursus_americanus
ENSGAFG00000021890	usb1	77	53.023	ENSUMAG00000021369	USB1	100	53.023	Ursus_maritimus
ENSGAFG00000021890	usb1	99	46.350	ENSVVUG00000023700	USB1	98	48.263	Vulpes_vulpes
ENSGAFG00000021890	usb1	77	55.399	ENSXETG00000013795	usb1	95	52.653	Xenopus_tropicalis
ENSGAFG00000021890	usb1	94	95.000	ENSXMAG00000024687	usb1	81	94.872	Xiphophorus_maculatus