EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000000589 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 20124 bases
Position: chrPPEB01005923.1:80066-100189
Accession: 15797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000003346	PABP	PF00658.18	1.1e-29	1	1
ENSGAGP00000003100	PABP	PF00658.18	1.3e-29	1	1
ENSGAGP00000003346	RRM_1	PF00076.22	1.8e-90	1	4
ENSGAGP00000003346	RRM_1	PF00076.22	1.8e-90	2	4
ENSGAGP00000003346	RRM_1	PF00076.22	1.8e-90	3	4
ENSGAGP00000003346	RRM_1	PF00076.22	1.8e-90	4	4
ENSGAGP00000003100	RRM_1	PF00076.22	3.8e-90	1	4
ENSGAGP00000003100	RRM_1	PF00076.22	3.8e-90	2	4
ENSGAGP00000003100	RRM_1	PF00076.22	3.8e-90	3	4
ENSGAGP00000003100	RRM_1	PF00076.22	3.8e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000003565	PABPC1L-201	1905	-	ENSGAGP00000003100	634 (aa)	-	-
ENSGAGT00000003854	PABPC1L-202	1665	-	ENSGAGP00000003346	554 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000000589's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000000589's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000000589	PABPC1L	98	75.594	ENSGAGG00000000869	PABPC1	98	73.968
ENSGAGG00000000589	PABPC1L	70	33.735	ENSGAGG00000022382	ELAVL2	92	33.735
ENSGAGG00000000589	PABPC1L	53	37.179	ENSGAGG00000020025	RBFOX3	53	37.179
ENSGAGG00000000589	PABPC1L	98	73.885	ENSGAGG00000001888	PABPC4	98	73.885
ENSGAGG00000000589	PABPC1L	53	37.681	ENSGAGG00000011562	CELF1	66	37.681
ENSGAGG00000000589	PABPC1L	53	36.232	ENSGAGG00000023497	CELF2	54	36.232
ENSGAGG00000000589	PABPC1L	65	30.723	ENSGAGG00000019457	RBM19	81	30.723
ENSGAGG00000000589	PABPC1L	65	30.120	ENSGAGG00000007529	TIA1	74	30.120

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000000589	PABPC1L	95	84.019	ENSG00000101104	PABPC1L	98	82.407	Homo_sapiens
ENSGAGG00000000589	PABPC1L	98	70.447	ENSAPOG00000010842	pabpc1l	99	70.447	Acanthochromis_polyacanthus
ENSGAGG00000000589	PABPC1L	90	86.232	ENSAMEG00000004099	PABPC1L	100	71.341	Ailuropoda_melanoleuca
ENSGAGG00000000589	PABPC1L	97	76.526	ENSACIG00000021004	-	99	76.526	Amphilophus_citrinellus
ENSGAGG00000000589	PABPC1L	97	76.092	ENSAOCG00000006167	-	99	71.111	Amphiprion_ocellaris
ENSGAGG00000000589	PABPC1L	94	77.778	ENSAPEG00000010558	-	99	83.099	Amphiprion_percula
ENSGAGG00000000589	PABPC1L	98	73.046	ENSATEG00000007428	pabpc1l	99	73.365	Anabas_testudineus
ENSGAGG00000000589	PABPC1L	97	89.195	ENSAPLG00000008415	PABPC1L	99	88.889	Anas_platyrhynchos
ENSGAGG00000000589	PABPC1L	99	87.382	ENSACAG00000011841	PABPC1L	99	87.382	Anolis_carolinensis
ENSGAGG00000000589	PABPC1L	98	75.080	ENSANAG00000026826	PABPC1L	99	75.080	Aotus_nancymaae
ENSGAGG00000000589	PABPC1L	98	73.492	ENSACLG00000024791	pabpc1l	99	73.492	Astatotilapia_calliptera
ENSGAGG00000000589	PABPC1L	98	81.111	ENSAMXG00000013552	pabpc1l	99	76.948	Astyanax_mexicanus
ENSGAGG00000000589	PABPC1L	70	94.048	ENSBTAG00000055300	-	100	94.048	Bos_taurus
ENSGAGG00000000589	PABPC1L	69	74.902	ENSBTAG00000016849	PABPC1L	86	68.929	Bos_taurus
ENSGAGG00000000589	PABPC1L	98	75.563	ENSCJAG00000017628	PABPC1L	99	75.563	Callithrix_jacchus
ENSGAGG00000000589	PABPC1L	66	80.460	ENSCJAG00000038506	-	100	80.460	Callithrix_jacchus
ENSGAGG00000000589	PABPC1L	97	81.166	ENSCAFG00000009573	PABPC1L	100	81.166	Canis_familiaris
ENSGAGG00000000589	PABPC1L	98	75.598	ENSCAFG00020013828	PABPC1L	99	75.598	Canis_lupus_dingo
ENSGAGG00000000589	PABPC1L	97	74.551	ENSCHIG00000025759	PABPC1L	91	74.551	Capra_hircus
ENSGAGG00000000589	PABPC1L	98	74.277	ENSTSYG00000006645	PABPC1L	99	74.277	Carlito_syrichta
ENSGAGG00000000589	PABPC1L	97	69.009	ENSCAPG00000014519	PABPC1L	99	69.009	Cavia_aperea
ENSGAGG00000000589	PABPC1L	98	72.684	ENSCPOG00000013633	PABPC1L	99	72.684	Cavia_porcellus
ENSGAGG00000000589	PABPC1L	98	75.241	ENSCCAG00000023338	PABPC1L	99	75.241	Cebus_capucinus
ENSGAGG00000000589	PABPC1L	98	76.045	ENSCATG00000034065	PABPC1L	99	76.045	Cercocebus_atys
ENSGAGG00000000589	PABPC1L	90	84.091	ENSCLAG00000005298	PABPC1L	99	72.568	Chinchilla_lanigera
ENSGAGG00000000589	PABPC1L	95	84.019	ENSCSAG00000014242	PABPC1L	99	75.598	Chlorocebus_sabaeus
ENSGAGG00000000589	PABPC1L	59	82.836	ENSCPBG00000007810	-	82	82.836	Chrysemys_picta_bellii
ENSGAGG00000000589	PABPC1L	80	93.694	ENSCPBG00000017755	-	99	98.874	Chrysemys_picta_bellii
ENSGAGG00000000589	PABPC1L	94	60.377	ENSCING00000002796	-	97	60.377	Ciona_intestinalis
ENSGAGG00000000589	PABPC1L	90	79.310	ENSCSAVG00000004246	-	96	64.144	Ciona_savignyi
ENSGAGG00000000589	PABPC1L	97	64.133	ENSCSAVG00000003102	-	100	83.221	Ciona_savignyi
ENSGAGG00000000589	PABPC1L	87	84.262	ENSCANG00000037530	PABPC1L	99	71.949	Colobus_angolensis_palliatus
ENSGAGG00000000589	PABPC1L	98	67.402	ENSCGRG00001021938	Pabpc1l	99	67.402	Cricetulus_griseus_chok1gshd
ENSGAGG00000000589	PABPC1L	98	67.402	ENSCGRG00000007946	Pabpc1l	99	67.402	Cricetulus_griseus_crigri
ENSGAGG00000000589	PABPC1L	98	73.262	ENSCSEG00000021295	pabpc1l	99	73.262	Cynoglossus_semilaevis
ENSGAGG00000000589	PABPC1L	94	81.609	ENSCVAG00000015943	-	86	90.076	Cyprinodon_variegatus
ENSGAGG00000000589	PABPC1L	98	78.000	ENSDARG00000002597	pabpc1l	88	90.769	Danio_rerio
ENSGAGG00000000589	PABPC1L	98	78.457	ENSDNOG00000048450	PABPC1L	99	78.457	Dasypus_novemcinctus
ENSGAGG00000000589	PABPC1L	90	81.840	ENSDORG00000001067	Pabpc1l	99	73.312	Dipodomys_ordii
ENSGAGG00000000589	PABPC1L	94	84.146	ENSETEG00000009969	PABPC1L	72	84.146	Echinops_telfairi
ENSGAGG00000000589	PABPC1L	70	92.857	ENSEASG00005023408	-	100	92.857	Equus_asinus_asinus
ENSGAGG00000000589	PABPC1L	58	82.635	ENSEASG00005023407	-	67	82.635	Equus_asinus_asinus
ENSGAGG00000000589	PABPC1L	68	83.333	ENSECAG00000040139	-	81	78.070	Equus_caballus
ENSGAGG00000000589	PABPC1L	94	78.912	ENSEEUG00000005978	PABPC1L	99	73.609	Erinaceus_europaeus
ENSGAGG00000000589	PABPC1L	98	83.333	ENSELUG00000001811	pabpc1l	99	83.333	Esox_lucius
ENSGAGG00000000589	PABPC1L	98	76.527	ENSFCAG00000011692	PABPC1L	99	76.527	Felis_catus
ENSGAGG00000000589	PABPC1L	89	83.590	ENSFALG00000005372	PABPC1L	98	83.590	Ficedula_albicollis
ENSGAGG00000000589	PABPC1L	98	70.947	ENSFDAG00000008291	PABPC1L	99	70.947	Fukomys_damarensis
ENSGAGG00000000589	PABPC1L	96	79.080	ENSFHEG00000003398	pabpc1l	99	73.920	Fundulus_heteroclitus
ENSGAGG00000000589	PABPC1L	97	83.696	ENSGMOG00000004437	pabpc1l	99	74.840	Gadus_morhua
ENSGAGG00000000589	PABPC1L	94	90.703	ENSGALG00000004123	PABPC1L	98	95.157	Gallus_gallus
ENSGAGG00000000589	PABPC1L	97	74.747	ENSGAFG00000021057	pabpc1l	99	70.091	Gambusia_affinis
ENSGAGG00000000589	PABPC1L	96	79.080	ENSGACG00000002792	pabpc1l	100	73.291	Gasterosteus_aculeatus
ENSGAGG00000000589	PABPC1L	95	84.019	ENSGGOG00000004584	PABPC1L	99	76.045	Gorilla_gorilla
ENSGAGG00000000589	PABPC1L	98	74.113	ENSHBUG00000006134	pabpc1l	99	74.113	Haplochromis_burtoni
ENSGAGG00000000589	PABPC1L	96	82.955	ENSHGLG00000008434	PABPC1L	99	73.046	Heterocephalus_glaber_female
ENSGAGG00000000589	PABPC1L	96	82.955	ENSHGLG00100012151	PABPC1L	99	73.046	Heterocephalus_glaber_male
ENSGAGG00000000589	PABPC1L	65	85.393	ENSHGLG00100019506	-	100	85.393	Heterocephalus_glaber_male
ENSGAGG00000000589	PABPC1L	97	76.134	ENSHCOG00000009270	pabpc1l	99	76.134	Hippocampus_comes
ENSGAGG00000000589	PABPC1L	66	63.793	ENSIPUG00000006760	-	88	63.793	Ictalurus_punctatus
ENSGAGG00000000589	PABPC1L	92	85.556	ENSIPUG00000012602	pabpc1l	99	78.060	Ictalurus_punctatus
ENSGAGG00000000589	PABPC1L	66	64.368	ENSIPUG00000006780	-	85	64.368	Ictalurus_punctatus
ENSGAGG00000000589	PABPC1L	98	74.240	ENSSTOG00000003739	PABPC1L	99	74.240	Ictidomys_tridecemlineatus
ENSGAGG00000000589	PABPC1L	98	58.053	ENSJJAG00000022406	Pabpc1l	99	55.943	Jaculus_jaculus
ENSGAGG00000000589	PABPC1L	98	73.003	ENSKMAG00000016847	pabpc1l	99	73.003	Kryptolebias_marmoratus
ENSGAGG00000000589	PABPC1L	98	72.397	ENSLBEG00000010084	pabpc1l	99	72.397	Labrus_bergylta
ENSGAGG00000000589	PABPC1L	97	80.728	ENSLACG00000005762	PABPC1L	98	80.334	Latimeria_chalumnae
ENSGAGG00000000589	PABPC1L	97	83.333	ENSLOCG00000007519	pabpc1l	98	79.904	Lepisosteus_oculatus
ENSGAGG00000000589	PABPC1L	98	76.592	ENSLAFG00000003553	PABPC1L	100	76.592	Loxodonta_africana
ENSGAGG00000000589	PABPC1L	98	76.206	ENSMFAG00000040365	PABPC1L	99	76.206	Macaca_fascicularis
ENSGAGG00000000589	PABPC1L	90	84.262	ENSMNEG00000032298	PABPC1L	99	74.759	Macaca_nemestrina
ENSGAGG00000000589	PABPC1L	98	76.045	ENSMLEG00000043139	PABPC1L	99	76.045	Mandrillus_leucophaeus
ENSGAGG00000000589	PABPC1L	91	80.000	ENSMAMG00000011854	pabpc1l	97	72.906	Mastacembelus_armatus
ENSGAGG00000000589	PABPC1L	98	73.492	ENSMZEG00005023713	pabpc1l	99	73.492	Maylandia_zebra
ENSGAGG00000000589	PABPC1L	99	89.100	ENSMGAG00000003674	PABPC1L	100	90.090	Meleagris_gallopavo
ENSGAGG00000000589	PABPC1L	98	71.834	ENSMOCG00000013186	Pabpc1l	99	66.190	Microtus_ochrogaster
ENSGAGG00000000589	PABPC1L	98	73.558	ENSMMOG00000020574	-	90	90.769	Mola_mola
ENSGAGG00000000589	PABPC1L	96	80.619	ENSMODG00000016198	PABPC1L	99	80.619	Monodelphis_domestica
ENSGAGG00000000589	PABPC1L	94	76.941	ENSMALG00000021622	pabpc1l	100	72.638	Monopterus_albus
ENSGAGG00000000589	PABPC1L	98	66.986	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	66.986	Mus_caroli
ENSGAGG00000000589	PABPC1L	98	67.412	ENSMUSG00000054582	Pabpc1l	99	67.412	Mus_musculus
ENSGAGG00000000589	PABPC1L	98	67.727	MGP_PahariEiJ_G0026071	Pabpc1l	99	67.727	Mus_pahari
ENSGAGG00000000589	PABPC1L	98	66.986	MGP_SPRETEiJ_G0025549	Pabpc1l	99	66.986	Mus_spretus
ENSGAGG00000000589	PABPC1L	90	85.956	ENSMPUG00000017646	PABPC1L	99	76.518	Mustela_putorius_furo
ENSGAGG00000000589	PABPC1L	97	77.108	ENSMLUG00000006324	PABPC1L	98	70.906	Myotis_lucifugus
ENSGAGG00000000589	PABPC1L	98	73.423	ENSNGAG00000010458	Pabpc1l	99	68.146	Nannospalax_galili
ENSGAGG00000000589	PABPC1L	93	79.775	ENSNBRG00000016633	pabpc1l	99	76.538	Neolamprologus_brichardi
ENSGAGG00000000589	PABPC1L	83	93.103	ENSMEUG00000007905	-	75	93.103	Notamacropus_eugenii
ENSGAGG00000000589	PABPC1L	98	74.759	ENSOPRG00000011846	PABPC1L	99	74.759	Ochotona_princeps
ENSGAGG00000000589	PABPC1L	98	69.069	ENSODEG00000015482	PABPC1L	99	69.069	Octodon_degus
ENSGAGG00000000589	PABPC1L	64	78.750	ENSODEG00000002920	-	97	78.750	Octodon_degus
ENSGAGG00000000589	PABPC1L	98	73.651	ENSONIG00000017314	pabpc1l	99	73.651	Oreochromis_niloticus
ENSGAGG00000000589	PABPC1L	87	71.366	ENSOANG00000015793	-	100	68.430	Ornithorhynchus_anatinus
ENSGAGG00000000589	PABPC1L	85	86.364	ENSOCUG00000003005	PABPC1L	94	86.364	Oryctolagus_cuniculus
ENSGAGG00000000589	PABPC1L	98	72.917	ENSORLG00000010322	pabpc1l	99	76.905	Oryzias_latipes
ENSGAGG00000000589	PABPC1L	94	77.551	ENSORLG00020021193	pabpc1l	99	76.905	Oryzias_latipes_hni
ENSGAGG00000000589	PABPC1L	98	72.756	ENSORLG00015017018	pabpc1l	99	76.905	Oryzias_latipes_hsok
ENSGAGG00000000589	PABPC1L	98	69.651	ENSOMEG00000010789	pabpc1l	99	69.651	Oryzias_melastigma
ENSGAGG00000000589	PABPC1L	98	74.921	ENSOGAG00000032999	PABPC1L	99	74.921	Otolemur_garnettii
ENSGAGG00000000589	PABPC1L	98	75.563	ENSOARG00000004578	PABPC1L	99	75.563	Ovis_aries
ENSGAGG00000000589	PABPC1L	95	84.262	ENSPPAG00000039677	PABPC1L	99	76.045	Pan_paniscus
ENSGAGG00000000589	PABPC1L	70	74.691	ENSPPRG00000019327	-	98	74.691	Panthera_pardus
ENSGAGG00000000589	PABPC1L	97	76.299	ENSPTIG00000006524	PABPC1L	99	76.299	Panthera_tigris_altaica
ENSGAGG00000000589	PABPC1L	70	82.716	ENSPTRG00000013531	PABPC1L	98	82.716	Pan_troglodytes
ENSGAGG00000000589	PABPC1L	90	86.364	ENSPANG00000018788	PABPC1L	99	84.262	Papio_anubis
ENSGAGG00000000589	PABPC1L	59	84.733	ENSPKIG00000016810	-	93	84.733	Paramormyrops_kingsleyae
ENSGAGG00000000589	PABPC1L	94	85.870	ENSPKIG00000007322	pabpc1l	99	77.671	Paramormyrops_kingsleyae
ENSGAGG00000000589	PABPC1L	75	98.063	ENSPSIG00000013289	PABPC1L	99	97.362	Pelodiscus_sinensis
ENSGAGG00000000589	PABPC1L	81	67.476	ENSPMGG00000023121	-	94	68.116	Periophthalmus_magnuspinnatus
ENSGAGG00000000589	PABPC1L	70	88.636	ENSPMGG00000023117	pabpc1l	97	84.186	Periophthalmus_magnuspinnatus
ENSGAGG00000000589	PABPC1L	98	65.710	ENSPEMG00000020671	Pabpc1l	99	66.083	Peromyscus_maniculatus_bairdii
ENSGAGG00000000589	PABPC1L	97	78.899	ENSPFOG00000013241	pabpc1l	99	74.092	Poecilia_formosa
ENSGAGG00000000589	PABPC1L	59	91.538	ENSPLAG00000023686	-	92	91.538	Poecilia_latipinna
ENSGAGG00000000589	PABPC1L	97	78.899	ENSPLAG00000017490	-	99	75.401	Poecilia_latipinna
ENSGAGG00000000589	PABPC1L	59	91.538	ENSPMEG00000009185	-	88	91.538	Poecilia_mexicana
ENSGAGG00000000589	PABPC1L	95	80.435	ENSPMEG00000007677	pabpc1l	99	73.726	Poecilia_mexicana
ENSGAGG00000000589	PABPC1L	75	81.643	ENSPREG00000015886	pabpc1l	100	81.643	Poecilia_reticulata
ENSGAGG00000000589	PABPC1L	90	87.500	ENSPPYG00000011042	PABPC1L	99	75.884	Pongo_abelii
ENSGAGG00000000589	PABPC1L	68	93.750	ENSPCAG00000011787	-	75	93.750	Procavia_capensis
ENSGAGG00000000589	PABPC1L	98	75.884	ENSPCOG00000020630	PABPC1L	99	75.884	Propithecus_coquereli
ENSGAGG00000000589	PABPC1L	98	73.609	ENSPVAG00000012663	PABPC1L	99	73.609	Pteropus_vampyrus
ENSGAGG00000000589	PABPC1L	97	74.383	ENSPNYG00000004101	pabpc1l	99	76.538	Pundamilia_nyererei
ENSGAGG00000000589	PABPC1L	98	76.238	ENSPNAG00000021248	pabpc1l	99	70.382	Pygocentrus_nattereri
ENSGAGG00000000589	PABPC1L	98	66.137	ENSRNOG00000012750	Pabpc1l	99	66.614	Rattus_norvegicus
ENSGAGG00000000589	PABPC1L	90	86.364	ENSRBIG00000035381	PABPC1L	99	75.884	Rhinopithecus_bieti
ENSGAGG00000000589	PABPC1L	90	86.364	ENSRROG00000044498	PABPC1L	99	75.723	Rhinopithecus_roxellana
ENSGAGG00000000589	PABPC1L	98	75.241	ENSSBOG00000009532	-	99	75.241	Saimiri_boliviensis_boliviensis
ENSGAGG00000000589	PABPC1L	97	74.747	ENSSHAG00000011446	PABPC1L	100	74.747	Sarcophilus_harrisii
ENSGAGG00000000589	PABPC1L	98	83.448	ENSSFOG00015017304	pabpc1l	99	83.448	Scleropages_formosus
ENSGAGG00000000589	PABPC1L	96	78.621	ENSSMAG00000010516	pabpc1l	98	87.500	Scophthalmus_maximus
ENSGAGG00000000589	PABPC1L	98	73.810	ENSSDUG00000014743	pabpc1l	99	73.810	Seriola_dumerili
ENSGAGG00000000589	PABPC1L	97	76.606	ENSSLDG00000006981	pabpc1l	98	88.038	Seriola_lalandi_dorsalis
ENSGAGG00000000589	PABPC1L	99	91.009	ENSSPUG00000004233	PABPC1L	99	91.009	Sphenodon_punctatus
ENSGAGG00000000589	PABPC1L	98	71.836	ENSSPAG00000017137	pabpc1l	99	71.836	Stegastes_partitus
ENSGAGG00000000589	PABPC1L	98	74.801	ENSSSCG00000007382	PABPC1L	99	74.801	Sus_scrofa
ENSGAGG00000000589	PABPC1L	98	87.281	ENSTGUG00000005114	PABPC1L	99	87.281	Taeniopygia_guttata
ENSGAGG00000000589	PABPC1L	96	72.727	ENSTRUG00000011085	pabpc1l	97	72.727	Takifugu_rubripes
ENSGAGG00000000589	PABPC1L	100	69.829	ENSTNIG00000017903	pabpc1l	100	69.829	Tetraodon_nigroviridis
ENSGAGG00000000589	PABPC1L	93	83.562	ENSTBEG00000002851	PABPC1L	79	83.562	Tupaia_belangeri
ENSGAGG00000000589	PABPC1L	93	73.154	ENSTTRG00000007618	PABPC1L	100	73.366	Tursiops_truncatus
ENSGAGG00000000589	PABPC1L	98	75.517	ENSUAMG00000017682	PABPC1L	99	75.517	Ursus_americanus
ENSGAGG00000000589	PABPC1L	74	82.451	ENSUMAG00000025436	PABPC1L	92	82.451	Ursus_maritimus
ENSGAGG00000000589	PABPC1L	97	88.372	ENSVVUG00000018939	PABPC1L	96	88.372	Vulpes_vulpes
ENSGAGG00000000589	PABPC1L	99	79.937	ENSXETG00000022831	pabpc1l	100	79.937	Xenopus_tropicalis
ENSGAGG00000000589	PABPC1L	98	76.430	ENSXCOG00000005459	pabpc1l	99	86.525	Xiphophorus_couchianus
ENSGAGG00000000589	PABPC1L	98	78.899	ENSXMAG00000017135	pabpc1l	99	74.690	Xiphophorus_maculatus