EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000001187 (Gene tree)
Gene ID: -
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 17483 bases
Position: chrPPEB01000004.1:752429-769911
Accession: 15818
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000001476	RRM_1	PF00076.22	3.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000001683	RBM38-201	1213	-	ENSGAGP00000001476	215 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000001187's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000001187's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000001187	RBM38	53	36.047	ENSGAGG00000016037	MSI1	64	36.047
ENSGAGG00000001187	RBM38	100	70.175	ENSGAGG00000016571	RBM24	100	75.652

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000001187	RBM38	100	82.110	ENSG00000132819	RBM38	94	92.241	Homo_sapiens
ENSGAGG00000001187	RBM38	100	59.244	ENSAPOG00000003301	rbm38	93	59.244	Acanthochromis_polyacanthus
ENSGAGG00000001187	RBM38	99	69.767	ENSAPOG00000009939	-	92	71.296	Acanthochromis_polyacanthus
ENSGAGG00000001187	RBM38	100	59.244	ENSACIG00000000010	rbm38	93	59.244	Amphilophus_citrinellus
ENSGAGG00000001187	RBM38	100	69.196	ENSACIG00000012502	-	100	87.179	Amphilophus_citrinellus
ENSGAGG00000001187	RBM38	98	68.224	ENSAOCG00000012559	RBM38	88	70.698	Amphiprion_ocellaris
ENSGAGG00000001187	RBM38	100	59.244	ENSAOCG00000013497	-	93	59.244	Amphiprion_ocellaris
ENSGAGG00000001187	RBM38	99	63.755	ENSAPEG00000023581	-	93	66.524	Amphiprion_percula
ENSGAGG00000001187	RBM38	100	61.883	ENSAPEG00000013137	rbm38	93	59.244	Amphiprion_percula
ENSGAGG00000001187	RBM38	100	59.821	ENSATEG00000016366	rbm38	94	59.821	Anabas_testudineus
ENSGAGG00000001187	RBM38	99	66.087	ENSATEG00000016710	-	93	68.240	Anabas_testudineus
ENSGAGG00000001187	RBM38	100	86.574	ENSACAG00000016238	RBM38	90	86.574	Anolis_carolinensis
ENSGAGG00000001187	RBM38	100	81.651	ENSANAG00000031959	RBM38	100	81.651	Aotus_nancymaae
ENSGAGG00000001187	RBM38	100	67.949	ENSACLG00000019514	-	95	69.787	Astatotilapia_calliptera
ENSGAGG00000001187	RBM38	99	68.142	ENSAMXG00000015601	-	92	71.171	Astyanax_mexicanus
ENSGAGG00000001187	RBM38	97	59.091	ENSAMXG00000038120	rbm38	92	59.545	Astyanax_mexicanus
ENSGAGG00000001187	RBM38	100	80.734	ENSBTAG00000008105	RBM38	90	80.734	Bos_taurus
ENSGAGG00000001187	RBM38	60	66.154	WBGene00006321	sup-12	59	85.393	Caenorhabditis_elegans
ENSGAGG00000001187	RBM38	100	82.569	ENSCJAG00000019139	RBM38	81	94.898	Callithrix_jacchus
ENSGAGG00000001187	RBM38	100	83.486	ENSCAFG00020021943	RBM38	90	83.486	Canis_lupus_dingo
ENSGAGG00000001187	RBM38	100	80.275	ENSCHIG00000002609	RBM38	90	80.275	Capra_hircus
ENSGAGG00000001187	RBM38	100	82.110	ENSCPOG00000012781	RBM38	90	82.110	Cavia_porcellus
ENSGAGG00000001187	RBM38	100	82.569	ENSCCAG00000036872	RBM38	81	94.898	Cebus_capucinus
ENSGAGG00000001187	RBM38	100	81.651	ENSCATG00000032133	RBM38	81	94.898	Cercocebus_atys
ENSGAGG00000001187	RBM38	100	81.193	ENSCLAG00000005906	RBM38	94	81.193	Chinchilla_lanigera
ENSGAGG00000001187	RBM38	100	81.651	ENSCSAG00000015503	RBM38	90	81.651	Chlorocebus_sabaeus
ENSGAGG00000001187	RBM38	100	99.070	ENSCPBG00000024059	RBM38	100	99.070	Chrysemys_picta_bellii
ENSGAGG00000001187	RBM38	69	63.057	ENSCING00000025102	-	68	63.057	Ciona_intestinalis
ENSGAGG00000001187	RBM38	72	63.125	ENSCSAVG00000001132	-	63	62.130	Ciona_savignyi
ENSGAGG00000001187	RBM38	100	62.385	ENSCANG00000030105	-	79	62.385	Colobus_angolensis_palliatus
ENSGAGG00000001187	RBM38	100	78.440	ENSCGRG00001012928	Rbm38	91	78.899	Cricetulus_griseus_chok1gshd
ENSGAGG00000001187	RBM38	71	65.161	ENSCSEG00000020943	rbm38	64	57.949	Cynoglossus_semilaevis
ENSGAGG00000001187	RBM38	100	68.807	ENSCSEG00000004701	-	94	71.041	Cynoglossus_semilaevis
ENSGAGG00000001187	RBM38	85	64.550	ENSCVAG00000015952	rbm38	92	57.265	Cyprinodon_variegatus
ENSGAGG00000001187	RBM38	99	69.565	ENSCVAG00000005472	-	93	68.670	Cyprinodon_variegatus
ENSGAGG00000001187	RBM38	99	65.471	ENSDARG00000058818	rbm38	93	65.471	Danio_rerio
ENSGAGG00000001187	RBM38	100	81.019	ENSDNOG00000032004	RBM38	100	81.019	Dasypus_novemcinctus
ENSGAGG00000001187	RBM38	100	81.651	ENSECAG00000007700	RBM38	90	81.651	Equus_caballus
ENSGAGG00000001187	RBM38	100	78.995	ENSEEUG00000013489	RBM38	91	80.365	Erinaceus_europaeus
ENSGAGG00000001187	RBM38	100	67.094	ENSELUG00000005849	-	95	67.094	Esox_lucius
ENSGAGG00000001187	RBM38	93	62.745	ENSELUG00000000585	-	88	62.745	Esox_lucius
ENSGAGG00000001187	RBM38	100	82.569	ENSFCAG00000042916	RBM38	81	93.878	Felis_catus
ENSGAGG00000001187	RBM38	80	93.023	ENSFALG00000010805	RBM38	90	93.023	Ficedula_albicollis
ENSGAGG00000001187	RBM38	99	71.759	ENSFHEG00000006160	-	92	71.759	Fundulus_heteroclitus
ENSGAGG00000001187	RBM38	99	56.356	ENSFHEG00000017748	rbm38	92	56.356	Fundulus_heteroclitus
ENSGAGG00000001187	RBM38	84	70.652	ENSGMOG00000016655	-	98	74.595	Gadus_morhua
ENSGAGG00000001187	RBM38	100	94.419	ENSGALG00000026081	RBM38	100	94.419	Gallus_gallus
ENSGAGG00000001187	RBM38	100	61.290	ENSGACG00000015224	rbm38	100	61.290	Gasterosteus_aculeatus
ENSGAGG00000001187	RBM38	98	68.056	ENSGACG00000009873	-	98	69.585	Gasterosteus_aculeatus
ENSGAGG00000001187	RBM38	100	70.270	ENSHBUG00000011778	-	94	72.197	Haplochromis_burtoni
ENSGAGG00000001187	RBM38	100	60.714	ENSHBUG00000012058	rbm38	93	60.084	Haplochromis_burtoni
ENSGAGG00000001187	RBM38	100	77.419	ENSHGLG00000015077	RBM38	90	80.645	Heterocephalus_glaber_female
ENSGAGG00000001187	RBM38	91	72.139	ENSHCOG00000005622	-	56	73.134	Hippocampus_comes
ENSGAGG00000001187	RBM38	60	72.868	ENSHCOG00000019040	rbm38	55	72.868	Hippocampus_comes
ENSGAGG00000001187	RBM38	99	69.333	ENSIPUG00000019349	-	92	69.333	Ictalurus_punctatus
ENSGAGG00000001187	RBM38	98	51.681	ENSKMAG00000012402	rbm38	98	51.250	Kryptolebias_marmoratus
ENSGAGG00000001187	RBM38	100	55.882	ENSLBEG00000018878	rbm38	93	55.882	Labrus_bergylta
ENSGAGG00000001187	RBM38	100	68.468	ENSLBEG00000016163	RBM38	94	70.852	Labrus_bergylta
ENSGAGG00000001187	RBM38	100	74.439	ENSLOCG00000003456	rbm38	94	74.439	Lepisosteus_oculatus
ENSGAGG00000001187	RBM38	100	81.651	ENSMFAG00000043808	RBM38	81	94.898	Macaca_fascicularis
ENSGAGG00000001187	RBM38	100	81.651	ENSMMUG00000031391	RBM38	81	94.898	Macaca_mulatta
ENSGAGG00000001187	RBM38	100	81.651	ENSMNEG00000034683	RBM38	81	94.898	Macaca_nemestrina
ENSGAGG00000001187	RBM38	52	76.577	ENSMLEG00000043261	-	90	76.577	Mandrillus_leucophaeus
ENSGAGG00000001187	RBM38	99	64.912	ENSMAMG00000020499	RBM38	93	67.672	Mastacembelus_armatus
ENSGAGG00000001187	RBM38	100	56.904	ENSMAMG00000024135	rbm38	93	56.904	Mastacembelus_armatus
ENSGAGG00000001187	RBM38	100	70.270	ENSMZEG00005000849	-	94	72.197	Maylandia_zebra
ENSGAGG00000001187	RBM38	100	60.084	ENSMZEG00005026036	rbm38	93	60.084	Maylandia_zebra
ENSGAGG00000001187	RBM38	100	78.899	ENSMAUG00000021211	Rbm38	91	79.358	Mesocricetus_auratus
ENSGAGG00000001187	RBM38	100	83.028	ENSMICG00000038011	RBM38	100	83.028	Microcebus_murinus
ENSGAGG00000001187	RBM38	100	79.358	ENSMOCG00000008715	Rbm38	91	79.817	Microtus_ochrogaster
ENSGAGG00000001187	RBM38	100	69.683	ENSMMOG00000020051	-	93	71.622	Mola_mola
ENSGAGG00000001187	RBM38	100	92.093	ENSMODG00000016458	RBM38	92	92.093	Monodelphis_domestica
ENSGAGG00000001187	RBM38	84	77.419	ENSMALG00000004680	RBM38	69	77.419	Monopterus_albus
ENSGAGG00000001187	RBM38	71	68.590	ENSMALG00000022327	rbm38	67	68.590	Monopterus_albus
ENSGAGG00000001187	RBM38	100	78.440	MGP_CAROLIEiJ_G0024745	Rbm38	91	81.651	Mus_caroli
ENSGAGG00000001187	RBM38	100	78.440	ENSMUSG00000027510	Rbm38	91	81.651	Mus_musculus
ENSGAGG00000001187	RBM38	100	77.982	MGP_PahariEiJ_G0026186	Rbm38	91	81.193	Mus_pahari
ENSGAGG00000001187	RBM38	100	77.982	MGP_SPRETEiJ_G0025665	Rbm38	91	81.193	Mus_spretus
ENSGAGG00000001187	RBM38	84	86.413	ENSMPUG00000006518	RBM38	93	85.561	Mustela_putorius_furo
ENSGAGG00000001187	RBM38	100	79.358	ENSMLUG00000011140	RBM38	100	79.358	Myotis_lucifugus
ENSGAGG00000001187	RBM38	100	67.949	ENSNBRG00000022545	-	95	69.787	Neolamprologus_brichardi
ENSGAGG00000001187	RBM38	100	61.233	ENSNBRG00000022685	rbm38	91	61.233	Neolamprologus_brichardi
ENSGAGG00000001187	RBM38	53	89.565	ENSMEUG00000005475	-	86	89.565	Notamacropus_eugenii
ENSGAGG00000001187	RBM38	100	81.193	ENSODEG00000007980	RBM38	90	81.193	Octodon_degus
ENSGAGG00000001187	RBM38	99	60.338	ENSONIG00000017073	rbm38	95	60.338	Oreochromis_niloticus
ENSGAGG00000001187	RBM38	99	67.811	ENSONIG00000020324	-	95	69.658	Oreochromis_niloticus
ENSGAGG00000001187	RBM38	100	92.558	ENSOANG00000009259	RBM38	83	92.558	Ornithorhynchus_anatinus
ENSGAGG00000001187	RBM38	100	62.343	ENSORLG00000027180	-	95	66.667	Oryzias_latipes
ENSGAGG00000001187	RBM38	100	54.393	ENSORLG00000012154	rbm38	93	55.649	Oryzias_latipes
ENSGAGG00000001187	RBM38	100	56.250	ENSORLG00020017871	rbm38	93	56.250	Oryzias_latipes_hni
ENSGAGG00000001187	RBM38	100	62.343	ENSORLG00020020751	-	95	66.667	Oryzias_latipes_hni
ENSGAGG00000001187	RBM38	100	62.605	ENSORLG00015017040	-	95	67.089	Oryzias_latipes_hsok
ENSGAGG00000001187	RBM38	98	58.333	ENSORLG00015012606	rbm38	93	56.067	Oryzias_latipes_hsok
ENSGAGG00000001187	RBM38	100	56.485	ENSOMEG00000006805	rbm38	93	56.485	Oryzias_melastigma
ENSGAGG00000001187	RBM38	100	63.713	ENSOMEG00000023912	-	95	67.647	Oryzias_melastigma
ENSGAGG00000001187	RBM38	100	81.651	ENSOGAG00000029136	RBM38	90	81.651	Otolemur_garnettii
ENSGAGG00000001187	RBM38	100	82.569	ENSPPRG00000009507	RBM38	81	93.878	Panthera_pardus
ENSGAGG00000001187	RBM38	94	82.524	ENSPTRG00000013661	RBM38	98	82.524	Pan_troglodytes
ENSGAGG00000001187	RBM38	58	92.742	ENSPTRG00000045845	-	68	92.742	Pan_troglodytes
ENSGAGG00000001187	RBM38	100	81.651	ENSPANG00000020919	-	81	94.898	Papio_anubis
ENSGAGG00000001187	RBM38	98	67.757	ENSPANG00000033127	-	91	66.822	Papio_anubis
ENSGAGG00000001187	RBM38	100	65.368	ENSPKIG00000025417	rbm38	95	65.801	Paramormyrops_kingsleyae
ENSGAGG00000001187	RBM38	99	69.725	ENSPKIG00000018122	-	95	88.288	Paramormyrops_kingsleyae
ENSGAGG00000001187	RBM38	100	97.209	ENSPSIG00000011649	RBM38	92	97.209	Pelodiscus_sinensis
ENSGAGG00000001187	RBM38	99	63.404	ENSPMGG00000017094	-	93	66.524	Periophthalmus_magnuspinnatus
ENSGAGG00000001187	RBM38	100	56.356	ENSPMGG00000011343	rbm38	94	56.780	Periophthalmus_magnuspinnatus
ENSGAGG00000001187	RBM38	100	91.163	ENSPCIG00000013648	RBM38	92	91.163	Phascolarctos_cinereus
ENSGAGG00000001187	RBM38	84	63.298	ENSPFOG00000011658	rbm38	92	56.962	Poecilia_formosa
ENSGAGG00000001187	RBM38	84	63.298	ENSPLAG00000005218	rbm38	92	56.962	Poecilia_latipinna
ENSGAGG00000001187	RBM38	99	67.660	ENSPLAG00000002500	-	93	69.362	Poecilia_latipinna
ENSGAGG00000001187	RBM38	84	62.567	ENSPMEG00000015770	rbm38	92	56.540	Poecilia_mexicana
ENSGAGG00000001187	RBM38	84	63.102	ENSPREG00000007398	rbm38	92	57.384	Poecilia_reticulata
ENSGAGG00000001187	RBM38	100	83.028	ENSPCOG00000026201	RBM38	80	94.898	Propithecus_coquereli
ENSGAGG00000001187	RBM38	100	53.670	ENSPVAG00000006457	RBM38	66	92.857	Pteropus_vampyrus
ENSGAGG00000001187	RBM38	100	70.270	ENSPNYG00000019727	-	100	86.325	Pundamilia_nyererei
ENSGAGG00000001187	RBM38	100	59.729	ENSPNYG00000021373	rbm38	93	59.664	Pundamilia_nyererei
ENSGAGG00000001187	RBM38	97	65.753	ENSPNAG00000010596	rbm38	91	65.753	Pygocentrus_nattereri
ENSGAGG00000001187	RBM38	99	68.018	ENSPNAG00000015123	-	96	75.000	Pygocentrus_nattereri
ENSGAGG00000001187	RBM38	100	80.275	ENSRNOG00000006420	Rbm38	91	80.275	Rattus_norvegicus
ENSGAGG00000001187	RBM38	100	66.514	ENSRROG00000036388	-	89	66.514	Rhinopithecus_roxellana
ENSGAGG00000001187	RBM38	100	81.651	ENSSBOG00000031053	RBM38	92	94.898	Saimiri_boliviensis_boliviensis
ENSGAGG00000001187	RBM38	98	65.297	ENSSFOG00015004453	rbm38	92	69.369	Scleropages_formosus
ENSGAGG00000001187	RBM38	99	67.826	ENSSDUG00000021082	RBM38	93	67.811	Seriola_dumerili
ENSGAGG00000001187	RBM38	100	60.338	ENSSDUG00000022611	rbm38	93	60.338	Seriola_dumerili
ENSGAGG00000001187	RBM38	99	67.826	ENSSLDG00000011778	RBM38	93	67.811	Seriola_lalandi_dorsalis
ENSGAGG00000001187	RBM38	100	62.332	ENSSLDG00000010845	rbm38	92	62.332	Seriola_lalandi_dorsalis
ENSGAGG00000001187	RBM38	99	68.224	ENSSPAG00000020989	RBM38	92	71.163	Stegastes_partitus
ENSGAGG00000001187	RBM38	100	58.996	ENSSPAG00000011113	rbm38	93	58.996	Stegastes_partitus
ENSGAGG00000001187	RBM38	100	83.028	ENSSSCG00000007504	RBM38	90	83.028	Sus_scrofa
ENSGAGG00000001187	RBM38	100	64.706	ENSTRUG00000019869	-	95	66.527	Takifugu_rubripes
ENSGAGG00000001187	RBM38	84	66.667	ENSTRUG00000024954	rbm38	80	64.039	Takifugu_rubripes
ENSGAGG00000001187	RBM38	100	67.111	ENSTNIG00000007093	-	100	69.027	Tetraodon_nigroviridis
ENSGAGG00000001187	RBM38	100	81.651	ENSUAMG00000019780	RBM38	90	82.110	Ursus_americanus
ENSGAGG00000001187	RBM38	100	83.486	ENSVVUG00000017246	RBM38	90	83.486	Vulpes_vulpes
ENSGAGG00000001187	RBM38	100	83.105	ENSXETG00000011268	rbm38	99	84.018	Xenopus_tropicalis
ENSGAGG00000001187	RBM38	62	76.087	ENSXCOG00000017324	-	60	76.087	Xiphophorus_couchianus
ENSGAGG00000001187	RBM38	84	64.706	ENSXMAG00000023662	rbm38	92	56.356	Xiphophorus_maculatus