EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000001387 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 31403 bases
Position: chrPPEB01006679.1:17684-49086
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	1	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	2	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	3	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	4	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	5	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	6	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	7	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	8	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	9	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	10	11
ENSGAGP00000001730	zf-C2H2	PF00096.26	1.1e-69	11	11
ENSGAGP00000001734	zf-CCHC	PF00098.23	2.4e-07	1	1
ENSGAGP00000001734	RRM_5	PF13893.6	1.1e-08	1	2
ENSGAGP00000001734	RRM_5	PF13893.6	1.1e-08	2	2
ENSGAGP00000001732	RRM_5	PF13893.6	6.2e-07	1	1
ENSGAGP00000001737	RRM_5	PF13893.6	9.1e-07	1	1
ENSGAGP00000001739	RRM_5	PF13893.6	9.7e-07	1	1
ENSGAGP00000001732	RRM_1	PF00076.22	4.8e-33	1	2
ENSGAGP00000001732	RRM_1	PF00076.22	4.8e-33	2	2
ENSGAGP00000001734	RRM_1	PF00076.22	6.4e-33	1	2
ENSGAGP00000001734	RRM_1	PF00076.22	6.4e-33	2	2
ENSGAGP00000001737	RRM_1	PF00076.22	7.2e-33	1	2
ENSGAGP00000001737	RRM_1	PF00076.22	7.2e-33	2	2
ENSGAGP00000001739	RRM_1	PF00076.22	7.7e-33	1	2
ENSGAGP00000001739	RRM_1	PF00076.22	7.7e-33	2	2
ENSGAGP00000001730	RRM_1	PF00076.22	4.4e-31	1	2
ENSGAGP00000001730	RRM_1	PF00076.22	4.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000001968	-	863	-	ENSGAGP00000001732	167 (aa)	-	-
ENSGAGT00000001970	-	1761	-	ENSGAGP00000001734	367 (aa)	-	-
ENSGAGT00000001975	-	804	-	ENSGAGP00000001739	188 (aa)	-	-
ENSGAGT00000001973	-	1062	-	ENSGAGP00000001737	186 (aa)	-	-
ENSGAGT00000001966	-	3826	-	ENSGAGP00000001730	583 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000001387's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000001387's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000001387	-	60	43.825	ENSGAGG00000003095	ZNF865	81	42.912
ENSGAGG00000001387	-	68	51.361	ENSGAGG00000018885	-	65	51.361
ENSGAGG00000001387	-	68	47.845	ENSGAGG00000005331	-	99	47.845
ENSGAGG00000001387	-	71	54.485	ENSGAGG00000010324	-	89	52.273
ENSGAGG00000001387	-	70	59.740	ENSGAGG00000017986	-	97	59.740
ENSGAGG00000001387	-	65	62.054	ENSGAGG00000009272	-	94	62.054
ENSGAGG00000001387	-	58	56.890	ENSGAGG00000007230	-	97	56.890
ENSGAGG00000001387	-	60	48.113	ENSGAGG00000017094	-	51	48.113
ENSGAGG00000001387	-	58	57.647	ENSGAGG00000009739	-	99	57.647
ENSGAGG00000001387	-	68	47.487	ENSGAGG00000011366	-	99	47.487
ENSGAGG00000001387	-	76	56.812	ENSGAGG00000002214	-	94	56.812
ENSGAGG00000001387	-	71	60.256	ENSGAGG00000012452	-	87	60.256
ENSGAGG00000001387	-	52	32.632	ENSGAGG00000003553	SRSF7	81	36.036
ENSGAGG00000001387	-	62	56.299	ENSGAGG00000014356	-	75	55.743
ENSGAGG00000001387	-	76	55.593	ENSGAGG00000020594	-	95	55.718
ENSGAGG00000001387	-	69	56.563	ENSGAGG00000001469	-	99	56.563
ENSGAGG00000001387	-	61	53.684	ENSGAGG00000015451	-	88	50.000
ENSGAGG00000001387	-	70	66.467	ENSGAGG00000006683	-	97	66.467
ENSGAGG00000001387	-	62	57.258	ENSGAGG00000000971	-	92	57.258
ENSGAGG00000001387	-	58	35.429	ENSGAGG00000020362	PRDM5	68	35.314
ENSGAGG00000001387	-	59	57.091	ENSGAGG00000001645	-	62	57.091
ENSGAGG00000001387	-	60	41.964	ENSGAGG00000003883	ZNF236	62	44.340
ENSGAGG00000001387	-	65	46.405	ENSGAGG00000022571	ZNF319	92	46.405
ENSGAGG00000001387	-	58	56.931	ENSGAGG00000011399	-	89	55.405
ENSGAGG00000001387	-	96	40.994	ENSGAGG00000014558	-	93	48.571
ENSGAGG00000001387	-	65	54.545	ENSGAGG00000006848	-	71	54.545
ENSGAGG00000001387	-	75	55.155	ENSGAGG00000006846	-	96	55.155
ENSGAGG00000001387	-	70	55.219	ENSGAGG00000002828	-	79	55.219
ENSGAGG00000001387	-	56	33.188	ENSGAGG00000022082	PRDM15	52	33.188
ENSGAGG00000001387	-	68	55.686	ENSGAGG00000011574	-	98	55.686
ENSGAGG00000001387	-	62	57.377	ENSGAGG00000019349	-	73	57.377
ENSGAGG00000001387	-	63	58.523	ENSGAGG00000010492	-	79	58.523
ENSGAGG00000001387	-	71	58.796	ENSGAGG00000004740	-	93	55.000
ENSGAGG00000001387	-	94	35.165	ENSGAGG00000016294	-	81	36.937
ENSGAGG00000001387	-	70	52.778	ENSGAGG00000010833	-	95	51.258
ENSGAGG00000001387	-	73	47.107	ENSGAGG00000013851	-	96	47.107
ENSGAGG00000001387	-	77	58.521	ENSGAGG00000002179	-	97	53.913
ENSGAGG00000001387	-	67	56.538	ENSGAGG00000006960	-	81	56.538
ENSGAGG00000001387	-	66	49.550	ENSGAGG00000001366	-	81	49.550
ENSGAGG00000001387	-	70	53.559	ENSGAGG00000014389	-	95	57.756
ENSGAGG00000001387	-	70	54.613	ENSGAGG00000018445	-	95	54.613
ENSGAGG00000001387	-	59	56.287	ENSGAGG00000013021	-	99	56.287
ENSGAGG00000001387	-	56	57.216	ENSGAGG00000016529	-	84	57.216
ENSGAGG00000001387	-	72	56.579	ENSGAGG00000006323	-	94	55.072
ENSGAGG00000001387	-	59	48.187	ENSGAGG00000004926	-	94	48.187
ENSGAGG00000001387	-	63	56.081	ENSGAGG00000011487	-	84	56.180
ENSGAGG00000001387	-	69	54.286	ENSGAGG00000008773	-	86	54.286
ENSGAGG00000001387	-	58	58.120	ENSGAGG00000005805	-	83	58.120
ENSGAGG00000001387	-	59	51.282	ENSGAGG00000015232	-	78	51.282
ENSGAGG00000001387	-	68	54.839	ENSGAGG00000020134	-	74	54.839
ENSGAGG00000001387	-	100	96.791	ENSGAGG00000008553	-	100	96.791
ENSGAGG00000001387	-	70	58.451	ENSGAGG00000020168	-	81	58.451

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000001387	-	74	51.111	ENSACLG00000020975	-	99	51.111	Astatotilapia_calliptera
ENSGAGG00000001387	-	59	60.573	ENSAMXG00000017609	-	73	60.573	Astyanax_mexicanus
ENSGAGG00000001387	-	78	49.346	ENSEBUG00000009208	-	78	49.346	Eptatretus_burgeri
ENSGAGG00000001387	-	61	48.684	ENSEBUG00000005258	-	97	48.684	Eptatretus_burgeri
ENSGAGG00000001387	-	54	49.505	ENSEBUG00000010952	-	72	49.505	Eptatretus_burgeri
ENSGAGG00000001387	-	56	57.616	ENSPCIG00000018955	-	70	57.616	Phascolarctos_cinereus
ENSGAGG00000001387	-	57	58.824	ENSSHAG00000014216	-	86	58.824	Sarcophilus_harrisii
ENSGAGG00000001387	-	65	65.241	ENSTGUG00000018385	-	100	65.241	Taeniopygia_guttata
ENSGAGG00000001387	-	62	55.517	ENSTGUG00000016220	-	100	55.517	Taeniopygia_guttata
ENSGAGG00000001387	-	62	61.304	ENSTGUG00000014292	-	99	61.304	Taeniopygia_guttata
ENSGAGG00000001387	-	56	53.795	ENSUMAG00000019336	-	97	53.795	Ursus_maritimus