EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000001952 (Gene tree)
Gene ID: -
Gene Symbol: UPF3A
Alias: HUPF3A|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 26953 bases
Position: chrPPEB01000005.1:45000-71952
Accession: 20332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000002408	Smg4_UPF3	PF03467.15	3.6e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000002761	UPF3A-201	531	-	ENSGAGP00000002408	176 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000001952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000001952's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000001952	UPF3A	81	73.944	ENSG00000125351	UPF3B	65	73.944	Homo_sapiens
ENSGAGG00000001952	UPF3A	81	84.507	ENSACIG00000020468	upf3a	70	86.538	Amphilophus_citrinellus
ENSGAGG00000001952	UPF3A	81	73.944	ENSANAG00000021894	-	66	73.944	Aotus_nancymaae
ENSGAGG00000001952	UPF3A	77	68.382	ENSANAG00000033169	-	58	63.816	Aotus_nancymaae
ENSGAGG00000001952	UPF3A	81	74.648	ENSBTAG00000035615	UPF3B	54	69.091	Bos_taurus
ENSGAGG00000001952	UPF3A	80	89.362	ENSBTAG00000047365	-	72	81.646	Bos_taurus
ENSGAGG00000001952	UPF3A	81	73.239	ENSCJAG00000004975	UPF3B	66	73.239	Callithrix_jacchus
ENSGAGG00000001952	UPF3A	81	74.648	ENSCHIG00000018011	-	54	69.091	Capra_hircus
ENSGAGG00000001952	UPF3A	81	73.239	ENSTSYG00000014690	UPF3B	67	66.443	Carlito_syrichta
ENSGAGG00000001952	UPF3A	81	73.944	ENSCATG00000017506	UPF3B	66	73.944	Cercocebus_atys
ENSGAGG00000001952	UPF3A	59	100.000	ENSCPBG00000022854	-	79	100.000	Chrysemys_picta_bellii
ENSGAGG00000001952	UPF3A	82	54.483	ENSCING00000008396	-	91	54.483	Ciona_intestinalis
ENSGAGG00000001952	UPF3A	81	73.944	ENSCANG00000029220	UPF3B	52	68.485	Colobus_angolensis_palliatus
ENSGAGG00000001952	UPF3A	69	68.613	ENSFHEG00000010418	upf3a	74	68.613	Fundulus_heteroclitus
ENSGAGG00000001952	UPF3A	82	98.621	ENSGALG00000016815	-	69	98.095	Gallus_gallus
ENSGAGG00000001952	UPF3A	81	69.014	ENSGACG00000017435	upf3b	66	59.116	Gasterosteus_aculeatus
ENSGAGG00000001952	UPF3A	81	73.944	ENSGGOG00000023995	UPF3B	54	73.333	Gorilla_gorilla
ENSGAGG00000001952	UPF3A	81	83.803	ENSHCOG00000013985	upf3a	65	79.355	Hippocampus_comes
ENSGAGG00000001952	UPF3A	82	84.028	ENSSTOG00000030282	-	61	84.028	Ictidomys_tridecemlineatus
ENSGAGG00000001952	UPF3A	82	84.028	ENSJJAG00000018099	-	76	76.543	Jaculus_jaculus
ENSGAGG00000001952	UPF3A	87	55.621	ENSMFAG00000045275	-	81	55.621	Macaca_fascicularis
ENSGAGG00000001952	UPF3A	81	73.944	ENSMFAG00000045414	UPF3B	66	73.944	Macaca_fascicularis
ENSGAGG00000001952	UPF3A	81	73.944	ENSMMUG00000020222	UPF3B	66	73.944	Macaca_mulatta
ENSGAGG00000001952	UPF3A	89	56.024	ENSMMUG00000046682	-	80	56.024	Macaca_mulatta
ENSGAGG00000001952	UPF3A	87	55.030	ENSMNEG00000040898	-	81	55.030	Macaca_nemestrina
ENSGAGG00000001952	UPF3A	81	73.944	ENSMNEG00000039794	UPF3B	66	73.944	Macaca_nemestrina
ENSGAGG00000001952	UPF3A	81	73.944	ENSMLEG00000010999	UPF3B	66	73.944	Mandrillus_leucophaeus
ENSGAGG00000001952	UPF3A	81	74.648	ENSMICG00000001743	UPF3B	52	69.091	Microcebus_murinus
ENSGAGG00000001952	UPF3A	59	85.577	ENSMALG00000002454	-	58	85.577	Monopterus_albus
ENSGAGG00000001952	UPF3A	82	68.750	ENSNBRG00000011560	upf3b	69	73.529	Neolamprologus_brichardi
ENSGAGG00000001952	UPF3A	81	73.944	ENSNLEG00000014897	UPF3B	56	73.333	Nomascus_leucogenys
ENSGAGG00000001952	UPF3A	81	61.972	ENSNLEG00000027516	-	66	61.972	Nomascus_leucogenys
ENSGAGG00000001952	UPF3A	82	81.944	ENSODEG00000009176	-	57	81.944	Octodon_degus
ENSGAGG00000001952	UPF3A	78	62.319	ENSODEG00000006064	-	70	62.319	Octodon_degus
ENSGAGG00000001952	UPF3A	89	61.111	ENSODEG00000007164	-	71	59.259	Octodon_degus
ENSGAGG00000001952	UPF3A	67	62.185	ENSODEG00000000596	-	59	61.345	Octodon_degus
ENSGAGG00000001952	UPF3A	82	64.828	ENSORLG00020003758	upf3b	50	64.828	Oryzias_latipes_hni
ENSGAGG00000001952	UPF3A	81	73.944	ENSPPAG00000040390	UPF3B	54	73.333	Pan_paniscus
ENSGAGG00000001952	UPF3A	81	74.648	ENSPTIG00000015264	UPF3B	52	69.091	Panthera_tigris_altaica
ENSGAGG00000001952	UPF3A	81	73.944	ENSPTRG00000022228	UPF3B	54	73.333	Pan_troglodytes
ENSGAGG00000001952	UPF3A	95	52.406	ENSPANG00000029350	-	91	52.406	Papio_anubis
ENSGAGG00000001952	UPF3A	81	73.944	ENSPANG00000000900	UPF3B	66	73.944	Papio_anubis
ENSGAGG00000001952	UPF3A	80	73.571	ENSPKIG00000019226	upf3b	68	76.190	Paramormyrops_kingsleyae
ENSGAGG00000001952	UPF3A	80	68.571	ENSPMGG00000016067	upf3b	66	58.889	Periophthalmus_magnuspinnatus
ENSGAGG00000001952	UPF3A	81	95.070	ENSPCIG00000019590	-	62	95.745	Phascolarctos_cinereus
ENSGAGG00000001952	UPF3A	81	83.803	ENSPLAG00000011960	upf3a	58	86.000	Poecilia_latipinna
ENSGAGG00000001952	UPF3A	60	84.762	ENSPREG00000005566	upf3a	61	84.762	Poecilia_reticulata
ENSGAGG00000001952	UPF3A	60	70.476	ENSPREG00000012214	upf3b	81	61.983	Poecilia_reticulata
ENSGAGG00000001952	UPF3A	81	73.944	ENSPPYG00000020675	-	50	68.485	Pongo_abelii
ENSGAGG00000001952	UPF3A	81	73.944	ENSPCOG00000021960	UPF3B	52	68.485	Propithecus_coquereli
ENSGAGG00000001952	UPF3A	81	70.423	ENSPNAG00000021528	upf3b	55	66.061	Pygocentrus_nattereri
ENSGAGG00000001952	UPF3A	81	73.944	ENSRROG00000041031	UPF3B	66	73.944	Rhinopithecus_roxellana
ENSGAGG00000001952	UPF3A	81	73.944	ENSSBOG00000019740	UPF3B	82	64.535	Saimiri_boliviensis_boliviensis
ENSGAGG00000001952	UPF3A	81	83.099	ENSSMAG00000003858	upf3a	70	83.810	Scophthalmus_maximus
ENSGAGG00000001952	UPF3A	81	71.127	ENSSMAG00000012913	upf3b	54	66.061	Scophthalmus_maximus
ENSGAGG00000001952	UPF3A	81	84.507	ENSSDUG00000009680	upf3a	62	87.129	Seriola_dumerili
ENSGAGG00000001952	UPF3A	81	84.507	ENSSPAG00000007938	upf3a	65	84.507	Stegastes_partitus
ENSGAGG00000001952	UPF3A	82	73.793	ENSVVUG00000011594	UPF3B	66	74.648	Vulpes_vulpes
ENSGAGG00000001952	UPF3A	81	73.944	ENSXETG00000007440	upf3b	68	67.089	Xenopus_tropicalis
ENSGAGG00000001952	UPF3A	80	67.143	ENSXCOG00000016586	upf3b	79	62.712	Xiphophorus_couchianus