EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000002179 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 16049 bases
Position: chrPPEB01004489.1:99100-115148
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	1	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	2	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	3	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	4	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	5	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	6	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	7	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	8	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	9	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	10	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	11	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	12	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	13	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	14	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	15	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	16	17
ENSGAGP00000002728	zf-C2H2	PF00096.26	6.9e-106	17	17
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	1	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	2	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	3	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	4	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	5	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	6	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	7	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	8	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	9	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	10	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	11	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	12	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	13	14
ENSGAGP00000002723	zf-C2H2	PF00096.26	1.6e-90	14	14
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	1	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	2	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	3	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	4	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	5	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	6	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	7	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	8	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	9	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	10	11
ENSGAGP00000002717	zf-C2H2	PF00096.26	1.6e-77	11	11
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	1	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	2	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	3	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	4	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	5	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	6	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	7	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	8	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	9	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	10	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	11	12
ENSGAGP00000002733	zf-C2H2	PF00096.26	4e-76	12	12
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	1	10
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	2	10
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	3	10
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	4	10
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	5	10
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	6	10
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	7	10
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	8	10
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	9	10
ENSGAGP00000002737	zf-C2H2	PF00096.26	1.5e-66	10	10
ENSGAGP00000002712	zf-C2H2	PF00096.26	3.9e-36	1	5
ENSGAGP00000002712	zf-C2H2	PF00096.26	3.9e-36	2	5
ENSGAGP00000002712	zf-C2H2	PF00096.26	3.9e-36	3	5
ENSGAGP00000002712	zf-C2H2	PF00096.26	3.9e-36	4	5
ENSGAGP00000002712	zf-C2H2	PF00096.26	3.9e-36	5	5
ENSGAGP00000002723	zf-met	PF12874.7	7.3e-15	1	1
ENSGAGP00000002728	zf-met	PF12874.7	4.5e-14	1	1
ENSGAGP00000002733	zf-met	PF12874.7	1.1e-12	1	2
ENSGAGP00000002733	zf-met	PF12874.7	1.1e-12	2	2
ENSGAGP00000002712	zf-met	PF12874.7	3.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000003124	-	1620	-	ENSGAGP00000002728	539 (aa)	-	-
ENSGAGT00000003129	-	1413	-	ENSGAGP00000002733	470 (aa)	-	-
ENSGAGT00000003118	-	1488	-	ENSGAGP00000002723	495 (aa)	-	-
ENSGAGT00000003112	-	1407	-	ENSGAGP00000002717	468 (aa)	-	-
ENSGAGT00000003107	-	735	-	ENSGAGP00000002712	244 (aa)	-	-
ENSGAGT00000003133	-	954	-	ENSGAGP00000002737	317 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000002179's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000002179's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000002179	-	98	62.016	ENSGAGG00000006323	-	99	61.942
ENSGAGG00000002179	-	98	33.333	ENSGAGG00000022082	PRDM15	54	33.058
ENSGAGG00000002179	-	92	85.034	ENSGAGG00000002214	-	98	85.034
ENSGAGG00000002179	-	99	60.965	ENSGAGG00000008773	-	98	58.042
ENSGAGG00000002179	-	99	62.733	ENSGAGG00000009272	-	97	62.838
ENSGAGG00000002179	-	96	63.194	ENSGAGG00000001469	-	100	60.697
ENSGAGG00000002179	-	98	62.411	ENSGAGG00000015232	-	93	53.333
ENSGAGG00000002179	-	99	61.610	ENSGAGG00000020134	-	97	61.468
ENSGAGG00000002179	-	99	58.703	ENSGAGG00000013851	-	99	58.065
ENSGAGG00000002179	-	98	54.737	ENSGAGG00000020168	-	84	54.737
ENSGAGG00000002179	-	89	76.087	ENSGAGG00000001645	-	92	58.519
ENSGAGG00000002179	-	97	53.913	ENSGAGG00000001387	-	77	58.521
ENSGAGG00000002179	-	64	46.457	ENSGAGG00000015899	GFI1	99	46.457
ENSGAGG00000002179	-	96	44.444	ENSGAGG00000003883	ZNF236	74	40.625
ENSGAGG00000002179	-	93	55.985	ENSGAGG00000011399	-	98	56.589
ENSGAGG00000002179	-	92	62.278	ENSGAGG00000007230	-	91	62.278
ENSGAGG00000002179	-	98	58.303	ENSGAGG00000018445	-	97	56.098
ENSGAGG00000002179	-	92	65.169	ENSGAGG00000010492	-	95	65.556
ENSGAGG00000002179	-	96	63.761	ENSGAGG00000004740	-	96	65.714
ENSGAGG00000002179	-	98	58.511	ENSGAGG00000011574	-	97	59.328
ENSGAGG00000002179	-	90	45.669	ENSGAGG00000014176	ZBTB16	58	38.136
ENSGAGG00000002179	-	98	64.372	ENSGAGG00000005805	-	100	64.372
ENSGAGG00000002179	-	98	58.065	ENSGAGG00000016529	-	96	58.065
ENSGAGG00000002179	-	95	63.386	ENSGAGG00000009739	-	99	63.478
ENSGAGG00000002179	-	100	62.025	ENSGAGG00000010833	-	98	62.898
ENSGAGG00000002179	-	99	60.616	ENSGAGG00000014356	-	95	58.769
ENSGAGG00000002179	-	99	62.369	ENSGAGG00000006960	-	98	60.588
ENSGAGG00000002179	-	100	39.070	ENSGAGG00000003095	ZNF865	85	46.853
ENSGAGG00000002179	-	99	65.517	ENSGAGG00000020594	-	99	64.474
ENSGAGG00000002179	-	97	54.167	ENSGAGG00000018885	-	83	54.167
ENSGAGG00000002179	-	99	46.552	ENSGAGG00000005331	-	86	56.923
ENSGAGG00000002179	-	97	78.571	ENSGAGG00000010324	-	94	65.248
ENSGAGG00000002179	-	94	50.595	ENSGAGG00000013021	-	100	51.765
ENSGAGG00000002179	-	100	58.099	ENSGAGG00000015451	-	97	60.664
ENSGAGG00000002179	-	97	65.868	ENSGAGG00000006683	-	97	66.467
ENSGAGG00000002179	-	90	55.000	ENSGAGG00000020362	PRDM5	69	55.000
ENSGAGG00000002179	-	92	51.562	ENSGAGG00000004926	-	98	53.191
ENSGAGG00000002179	-	100	63.487	ENSGAGG00000011487	-	98	63.487
ENSGAGG00000002179	-	99	61.724	ENSGAGG00000014389	-	99	62.437
ENSGAGG00000002179	-	96	57.544	ENSGAGG00000011366	-	97	60.000
ENSGAGG00000002179	-	93	46.528	ENSGAGG00000017094	-	53	47.059
ENSGAGG00000002179	-	96	57.672	ENSGAGG00000006848	-	73	57.672
ENSGAGG00000002179	-	100	53.169	ENSGAGG00000006846	-	92	56.575
ENSGAGG00000002179	-	99	62.343	ENSGAGG00000012452	-	93	62.343
ENSGAGG00000002179	-	98	55.319	ENSGAGG00000017640	-	88	55.319
ENSGAGG00000002179	-	98	61.088	ENSGAGG00000017986	-	96	63.514
ENSGAGG00000002179	-	93	61.069	ENSGAGG00000000971	-	93	61.660
ENSGAGG00000002179	-	93	41.137	ENSGAGG00000022571	ZNF319	99	41.137
ENSGAGG00000002179	-	98	60.900	ENSGAGG00000019349	-	99	59.752
ENSGAGG00000002179	-	90	47.368	ENSGAGG00000021327	GFI1B	52	50.000
ENSGAGG00000002179	-	99	61.932	ENSGAGG00000002828	-	88	61.932

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000002179	-	92	60.667	ENSAMXG00000029161	-	91	60.667	Astyanax_mexicanus
ENSGAGG00000002179	-	99	66.667	ENSCPBG00000012976	-	99	61.741	Chrysemys_picta_bellii
ENSGAGG00000002179	-	100	61.278	ENSCPBG00000021487	-	93	61.278	Chrysemys_picta_bellii
ENSGAGG00000002179	-	99	61.328	ENSCPBG00000021479	-	99	60.681	Chrysemys_picta_bellii
ENSGAGG00000002179	-	98	63.509	ENSCPBG00000016841	-	96	66.038	Chrysemys_picta_bellii
ENSGAGG00000002179	-	91	88.435	ENSCPBG00000001421	-	99	88.435	Chrysemys_picta_bellii
ENSGAGG00000002179	-	99	63.462	ENSCPBG00000001272	-	98	64.486	Chrysemys_picta_bellii
ENSGAGG00000002179	-	100	77.023	ENSCPBG00000004990	-	100	69.677	Chrysemys_picta_bellii
ENSGAGG00000002179	-	100	61.628	ENSCPBG00000004030	-	99	61.832	Chrysemys_picta_bellii
ENSGAGG00000002179	-	93	56.614	ENSPSIG00000000522	-	100	55.122	Pelodiscus_sinensis
ENSGAGG00000002179	-	100	58.654	ENSPSIG00000015465	-	99	58.654	Pelodiscus_sinensis
ENSGAGG00000002179	-	99	53.115	ENSPSIG00000001026	-	90	63.576	Pelodiscus_sinensis
ENSGAGG00000002179	-	98	62.400	ENSPSIG00000009893	-	99	62.400	Pelodiscus_sinensis
ENSGAGG00000002179	-	93	70.566	ENSPSIG00000012865	-	98	61.458	Pelodiscus_sinensis
ENSGAGG00000002179	-	93	63.396	ENSPSIG00000002569	-	95	63.740	Pelodiscus_sinensis
ENSGAGG00000002179	-	97	54.386	ENSPSIG00000015216	-	97	59.389	Pelodiscus_sinensis
ENSGAGG00000002179	-	93	64.706	ENSTGUG00000018542	-	100	64.706	Taeniopygia_guttata
ENSGAGG00000002179	-	93	58.397	ENSTGUG00000016850	-	99	60.156	Taeniopygia_guttata
ENSGAGG00000002179	-	98	57.209	ENSTGUG00000013736	-	99	62.000	Taeniopygia_guttata
ENSGAGG00000002179	-	94	58.883	ENSTGUG00000018445	-	98	58.883	Taeniopygia_guttata
ENSGAGG00000002179	-	93	55.556	ENSTGUG00000015260	-	100	57.037	Taeniopygia_guttata
ENSGAGG00000002179	-	98	56.504	ENSTGUG00000016781	-	99	58.736	Taeniopygia_guttata
ENSGAGG00000002179	-	98	57.676	ENSTGUG00000016516	-	99	60.000	Taeniopygia_guttata
ENSGAGG00000002179	-	98	57.746	ENSTGUG00000014888	-	99	61.261	Taeniopygia_guttata
ENSGAGG00000002179	-	98	55.399	ENSTGUG00000014614	-	100	59.500	Taeniopygia_guttata
ENSGAGG00000002179	-	92	57.962	ENSTGUG00000018374	-	99	59.140	Taeniopygia_guttata
ENSGAGG00000002179	-	93	62.037	ENSTGUG00000018349	-	100	62.963	Taeniopygia_guttata
ENSGAGG00000002179	-	93	61.905	ENSTGUG00000018518	-	100	62.727	Taeniopygia_guttata
ENSGAGG00000002179	-	93	62.000	ENSTGUG00000018327	-	100	65.101	Taeniopygia_guttata