EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000002700 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 133320 bases
Position: chrPPEB01004520.1:1616-134935
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000003344	Upf2	PF04050.14	1.7e-32	1	1
ENSGAGP00000003353	Upf2	PF04050.14	1.9e-32	1	1
ENSGAGP00000003353	MIF4G	PF02854.19	3.2e-78	1	3
ENSGAGP00000003353	MIF4G	PF02854.19	3.2e-78	2	3
ENSGAGP00000003353	MIF4G	PF02854.19	3.2e-78	3	3
ENSGAGP00000003344	MIF4G	PF02854.19	3.6e-78	1	3
ENSGAGP00000003344	MIF4G	PF02854.19	3.6e-78	2	3
ENSGAGP00000003344	MIF4G	PF02854.19	3.6e-78	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000003852	UPF2-201	4485	-	ENSGAGP00000003344	1295 (aa)	-	-
ENSGAGT00000003864	UPF2-202	4413	-	ENSGAGP00000003353	1271 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000002700's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000002700's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000002700	UPF2	100	92.767	ENSG00000151461	UPF2	100	92.767	Homo_sapiens
ENSGAGG00000002700	UPF2	99	78.387	ENSAPOG00000015837	UPF2	100	78.230	Acanthochromis_polyacanthus
ENSGAGG00000002700	UPF2	100	93.548	ENSAMEG00000004586	UPF2	100	93.548	Ailuropoda_melanoleuca
ENSGAGG00000002700	UPF2	99	82.279	ENSACIG00000018078	UPF2	100	82.592	Amphilophus_citrinellus
ENSGAGG00000002700	UPF2	100	82.449	ENSAOCG00000016766	UPF2	100	82.605	Amphiprion_ocellaris
ENSGAGG00000002700	UPF2	100	82.527	ENSAPEG00000019084	UPF2	100	82.683	Amphiprion_percula
ENSGAGG00000002700	UPF2	100	82.271	ENSATEG00000021677	UPF2	99	82.399	Anabas_testudineus
ENSGAGG00000002700	UPF2	100	88.758	ENSAPLG00000010287	UPF2	90	92.528	Anas_platyrhynchos
ENSGAGG00000002700	UPF2	100	93.548	ENSACAG00000009259	UPF2	100	93.548	Anolis_carolinensis
ENSGAGG00000002700	UPF2	99	82.691	ENSANAG00000028451	UPF2	99	82.533	Aotus_nancymaae
ENSGAGG00000002700	UPF2	100	80.841	ENSACLG00000012696	UPF2	100	82.619	Astatotilapia_calliptera
ENSGAGG00000002700	UPF2	99	82.864	ENSAMXG00000013700	UPF2	99	83.020	Astyanax_mexicanus
ENSGAGG00000002700	UPF2	100	93.784	ENSBTAG00000000288	UPF2	100	100.000	Bos_taurus
ENSGAGG00000002700	UPF2	63	30.230	WBGene00004881	smg-3	69	30.351	Caenorhabditis_elegans
ENSGAGG00000002700	UPF2	100	92.211	ENSCJAG00000020685	UPF2	100	92.211	Callithrix_jacchus
ENSGAGG00000002700	UPF2	100	93.627	ENSCAFG00000004839	UPF2	100	93.627	Canis_familiaris
ENSGAGG00000002700	UPF2	97	97.537	ENSCAFG00020005882	UPF2	100	97.449	Canis_lupus_dingo
ENSGAGG00000002700	UPF2	100	93.706	ENSCHIG00000020359	UPF2	100	93.706	Capra_hircus
ENSGAGG00000002700	UPF2	100	93.076	ENSTSYG00000000935	UPF2	97	97.740	Carlito_syrichta
ENSGAGG00000002700	UPF2	91	83.821	ENSCAPG00000016658	UPF2	94	83.506	Cavia_aperea
ENSGAGG00000002700	UPF2	99	91.284	ENSCPOG00000008809	UPF2	100	90.887	Cavia_porcellus
ENSGAGG00000002700	UPF2	100	85.445	ENSCCAG00000035991	UPF2	100	85.445	Cebus_capucinus
ENSGAGG00000002700	UPF2	100	92.925	ENSCATG00000032679	UPF2	100	92.925	Cercocebus_atys
ENSGAGG00000002700	UPF2	100	92.604	ENSCLAG00000011434	UPF2	100	92.211	Chinchilla_lanigera
ENSGAGG00000002700	UPF2	100	92.925	ENSCSAG00000013372	UPF2	100	92.925	Chlorocebus_sabaeus
ENSGAGG00000002700	UPF2	87	94.208	ENSCHOG00000000422	UPF2	89	93.527	Choloepus_hoffmanni
ENSGAGG00000002700	UPF2	99	97.951	ENSCPBG00000027823	UPF2	100	97.951	Chrysemys_picta_bellii
ENSGAGG00000002700	UPF2	79	48.869	ENSCSAVG00000007772	-	99	48.470	Ciona_savignyi
ENSGAGG00000002700	UPF2	99	86.797	ENSCANG00000040396	UPF2	100	86.641	Colobus_angolensis_palliatus
ENSGAGG00000002700	UPF2	100	93.627	ENSCGRG00001019347	Upf2	100	93.784	Cricetulus_griseus_chok1gshd
ENSGAGG00000002700	UPF2	100	93.627	ENSCGRG00000017993	Upf2	100	93.784	Cricetulus_griseus_crigri
ENSGAGG00000002700	UPF2	91	81.417	ENSCSEG00000003520	UPF2	91	80.895	Cynoglossus_semilaevis
ENSGAGG00000002700	UPF2	92	84.394	ENSCVAG00000006167	UPF2	93	85.424	Cyprinodon_variegatus
ENSGAGG00000002700	UPF2	100	93.470	ENSDNOG00000018160	UPF2	100	93.470	Dasypus_novemcinctus
ENSGAGG00000002700	UPF2	100	92.526	ENSDORG00000002478	Upf2	100	92.683	Dipodomys_ordii
ENSGAGG00000002700	UPF2	72	98.529	ENSETEG00000011583	-	67	98.529	Echinops_telfairi
ENSGAGG00000002700	UPF2	69	68.750	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSGAGG00000002700	UPF2	100	91.424	ENSEASG00005019274	UPF2	100	96.296	Equus_asinus_asinus
ENSGAGG00000002700	UPF2	100	93.076	ENSECAG00000017022	UPF2	100	92.683	Equus_caballus
ENSGAGG00000002700	UPF2	82	92.652	ENSEEUG00000007819	UPF2	82	92.652	Erinaceus_europaeus
ENSGAGG00000002700	UPF2	99	81.719	ENSELUG00000012014	UPF2	100	82.207	Esox_lucius
ENSGAGG00000002700	UPF2	100	97.238	ENSFCAG00000005785	UPF2	100	93.784	Felis_catus
ENSGAGG00000002700	UPF2	100	95.358	ENSFALG00000001889	UPF2	98	95.358	Ficedula_albicollis
ENSGAGG00000002700	UPF2	100	92.447	ENSFDAG00000014348	UPF2	100	92.211	Fukomys_damarensis
ENSGAGG00000002700	UPF2	92	84.915	ENSFHEG00000009826	UPF2	92	84.919	Fundulus_heteroclitus
ENSGAGG00000002700	UPF2	91	83.592	ENSGMOG00000005557	UPF2	100	80.986	Gadus_morhua
ENSGAGG00000002700	UPF2	100	95.440	ENSGALG00000033772	UPF2	100	95.440	Gallus_gallus
ENSGAGG00000002700	UPF2	100	81.981	ENSGAFG00000020867	UPF2	100	81.747	Gambusia_affinis
ENSGAGG00000002700	UPF2	90	84.297	ENSGACG00000001080	UPF2	100	81.967	Gasterosteus_aculeatus
ENSGAGG00000002700	UPF2	100	92.767	ENSGGOG00000001479	UPF2	100	92.767	Gorilla_gorilla
ENSGAGG00000002700	UPF2	100	80.685	ENSHBUG00000004249	UPF2	100	82.592	Haplochromis_burtoni
ENSGAGG00000002700	UPF2	100	92.604	ENSHGLG00000015176	-	100	92.211	Heterocephalus_glaber_female
ENSGAGG00000002700	UPF2	99	82.126	ENSHGLG00000003822	-	99	81.181	Heterocephalus_glaber_female
ENSGAGG00000002700	UPF2	88	94.160	ENSHGLG00100010036	UPF2	94	90.077	Heterocephalus_glaber_male
ENSGAGG00000002700	UPF2	100	79.891	ENSHCOG00000004025	UPF2	99	79.891	Hippocampus_comes
ENSGAGG00000002700	UPF2	100	82.215	ENSIPUG00000015524	UPF2	100	82.279	Ictalurus_punctatus
ENSGAGG00000002700	UPF2	100	93.312	ENSSTOG00000013075	UPF2	100	93.470	Ictidomys_tridecemlineatus
ENSGAGG00000002700	UPF2	100	91.896	ENSJJAG00000004913	Upf2	100	91.739	Jaculus_jaculus
ENSGAGG00000002700	UPF2	98	79.876	ENSKMAG00000001071	UPF2	92	84.773	Kryptolebias_marmoratus
ENSGAGG00000002700	UPF2	80	81.827	ENSLBEG00000000728	-	93	81.925	Labrus_bergylta
ENSGAGG00000002700	UPF2	99	78.834	ENSLBEG00000016394	-	99	82.568	Labrus_bergylta
ENSGAGG00000002700	UPF2	99	80.172	ENSLACG00000015945	UPF2	100	79.859	Latimeria_chalumnae
ENSGAGG00000002700	UPF2	99	86.604	ENSLOCG00000015698	UPF2	100	86.682	Lepisosteus_oculatus
ENSGAGG00000002700	UPF2	100	92.846	ENSMFAG00000043865	UPF2	100	92.846	Macaca_fascicularis
ENSGAGG00000002700	UPF2	100	92.846	ENSMMUG00000008241	UPF2	100	92.846	Macaca_mulatta
ENSGAGG00000002700	UPF2	81	91.610	ENSMNEG00000008062	UPF2	99	91.871	Macaca_nemestrina
ENSGAGG00000002700	UPF2	95	96.627	ENSMLEG00000036120	UPF2	100	96.860	Mandrillus_leucophaeus
ENSGAGG00000002700	UPF2	100	82.037	ENSMAMG00000018276	UPF2	100	82.243	Mastacembelus_armatus
ENSGAGG00000002700	UPF2	100	80.841	ENSMZEG00005021595	UPF2	100	82.619	Maylandia_zebra
ENSGAGG00000002700	UPF2	99	94.099	ENSMGAG00000004573	UPF2	99	94.099	Meleagris_gallopavo
ENSGAGG00000002700	UPF2	100	91.424	ENSMAUG00000016512	Upf2	100	91.581	Mesocricetus_auratus
ENSGAGG00000002700	UPF2	95	96.939	ENSMICG00000001716	UPF2	99	96.939	Microcebus_murinus
ENSGAGG00000002700	UPF2	100	92.840	ENSMOCG00000008263	Upf2	100	92.604	Microtus_ochrogaster
ENSGAGG00000002700	UPF2	90	82.450	ENSMMOG00000006528	UPF2	100	78.326	Mola_mola
ENSGAGG00000002700	UPF2	100	94.178	ENSMODG00000016794	UPF2	100	94.178	Monodelphis_domestica
ENSGAGG00000002700	UPF2	99	80.547	ENSMALG00000002663	UPF2	100	82.238	Monopterus_albus
ENSGAGG00000002700	UPF2	100	92.998	MGP_CAROLIEiJ_G0023157	Upf2	100	95.810	Mus_caroli
ENSGAGG00000002700	UPF2	100	93.234	ENSMUSG00000043241	Upf2	99	95.810	Mus_musculus
ENSGAGG00000002700	UPF2	100	92.762	MGP_PahariEiJ_G0019217	Upf2	100	95.429	Mus_pahari
ENSGAGG00000002700	UPF2	100	93.470	MGP_SPRETEiJ_G0024075	Upf2	100	95.810	Mus_spretus
ENSGAGG00000002700	UPF2	100	93.548	ENSMPUG00000001064	UPF2	100	93.548	Mustela_putorius_furo
ENSGAGG00000002700	UPF2	99	92.537	ENSMLUG00000000228	UPF2	100	92.459	Myotis_lucifugus
ENSGAGG00000002700	UPF2	100	80.841	ENSNBRG00000013629	UPF2	100	82.619	Neolamprologus_brichardi
ENSGAGG00000002700	UPF2	100	92.846	ENSNLEG00000012058	UPF2	100	92.846	Nomascus_leucogenys
ENSGAGG00000002700	UPF2	56	98.964	ENSMEUG00000002180	-	54	98.964	Notamacropus_eugenii
ENSGAGG00000002700	UPF2	77	97.887	ENSOPRG00000006801	-	77	97.887	Ochotona_princeps
ENSGAGG00000002700	UPF2	100	92.447	ENSODEG00000001290	UPF2	100	92.054	Octodon_degus
ENSGAGG00000002700	UPF2	100	80.841	ENSONIG00000017991	UPF2	100	82.619	Oreochromis_niloticus
ENSGAGG00000002700	UPF2	99	92.476	ENSOCUG00000006230	UPF2	100	92.163	Oryctolagus_cuniculus
ENSGAGG00000002700	UPF2	100	81.854	ENSORLG00000017189	UPF2	100	82.358	Oryzias_latipes
ENSGAGG00000002700	UPF2	100	81.854	ENSORLG00020005969	UPF2	100	82.358	Oryzias_latipes_hni
ENSGAGG00000002700	UPF2	100	81.854	ENSORLG00015005713	UPF2	100	82.358	Oryzias_latipes_hsok
ENSGAGG00000002700	UPF2	99	78.108	ENSOMEG00000023420	UPF2	98	79.186	Oryzias_melastigma
ENSGAGG00000002700	UPF2	100	93.076	ENSOGAG00000005796	UPF2	100	93.076	Otolemur_garnettii
ENSGAGG00000002700	UPF2	100	93.559	ENSOARG00000014587	UPF2	100	93.559	Ovis_aries
ENSGAGG00000002700	UPF2	99	89.210	ENSPPAG00000037953	UPF2	100	89.445	Pan_paniscus
ENSGAGG00000002700	UPF2	100	93.784	ENSPPRG00000000690	UPF2	100	93.784	Panthera_pardus
ENSGAGG00000002700	UPF2	100	93.784	ENSPTIG00000008867	UPF2	100	93.784	Panthera_tigris_altaica
ENSGAGG00000002700	UPF2	100	92.767	ENSPTRG00000002291	UPF2	100	92.767	Pan_troglodytes
ENSGAGG00000002700	UPF2	100	92.925	ENSPANG00000023399	UPF2	100	92.925	Papio_anubis
ENSGAGG00000002700	UPF2	100	82.215	ENSPKIG00000025502	UPF2	100	81.279	Paramormyrops_kingsleyae
ENSGAGG00000002700	UPF2	59	97.344	ENSPSIG00000015158	UPF2	95	97.344	Pelodiscus_sinensis
ENSGAGG00000002700	UPF2	99	80.549	ENSPMGG00000005259	UPF2	100	81.461	Periophthalmus_magnuspinnatus
ENSGAGG00000002700	UPF2	93	90.379	ENSPEMG00000015731	Upf2	99	90.379	Peromyscus_maniculatus_bairdii
ENSGAGG00000002700	UPF2	100	93.863	ENSPCIG00000006656	UPF2	100	93.863	Phascolarctos_cinereus
ENSGAGG00000002700	UPF2	100	82.293	ENSPFOG00000017118	UPF2	100	82.059	Poecilia_formosa
ENSGAGG00000002700	UPF2	100	82.293	ENSPLAG00000005094	UPF2	100	82.059	Poecilia_latipinna
ENSGAGG00000002700	UPF2	100	82.293	ENSPMEG00000017009	UPF2	100	82.059	Poecilia_mexicana
ENSGAGG00000002700	UPF2	99	82.381	ENSPREG00000021880	UPF2	100	82.381	Poecilia_reticulata
ENSGAGG00000002700	UPF2	66	94.258	ENSPPYG00000002089	-	100	94.258	Pongo_abelii
ENSGAGG00000002700	UPF2	100	79.544	ENSPCAG00000000684	UPF2	90	84.573	Procavia_capensis
ENSGAGG00000002700	UPF2	99	89.835	ENSPCOG00000021656	UPF2	100	89.835	Propithecus_coquereli
ENSGAGG00000002700	UPF2	100	85.928	ENSPVAG00000017286	UPF2	100	85.928	Pteropus_vampyrus
ENSGAGG00000002700	UPF2	99	78.393	ENSPNYG00000017096	UPF2	100	80.172	Pundamilia_nyererei
ENSGAGG00000002700	UPF2	100	83.697	ENSPNAG00000009357	UPF2	100	83.853	Pygocentrus_nattereri
ENSGAGG00000002700	UPF2	99	88.428	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSGAGG00000002700	UPF2	99	91.726	ENSRBIG00000037780	UPF2	100	91.805	Rhinopithecus_bieti
ENSGAGG00000002700	UPF2	100	92.610	ENSRROG00000043547	UPF2	100	92.767	Rhinopithecus_roxellana
ENSGAGG00000002700	UPF2	100	91.896	ENSSBOG00000020012	UPF2	100	92.054	Saimiri_boliviensis_boliviensis
ENSGAGG00000002700	UPF2	100	83.866	ENSSFOG00015023788	upf2	100	83.242	Scleropages_formosus
ENSGAGG00000002700	UPF2	90	82.944	ENSSMAG00000007637	UPF2	100	79.225	Scophthalmus_maximus
ENSGAGG00000002700	UPF2	100	82.229	ENSSDUG00000017244	UPF2	99	82.527	Seriola_dumerili
ENSGAGG00000002700	UPF2	99	80.595	ENSSLDG00000016866	UPF2	100	80.893	Seriola_lalandi_dorsalis
ENSGAGG00000002700	UPF2	100	91.424	ENSSARG00000008615	UPF2	100	91.424	Sorex_araneus
ENSGAGG00000002700	UPF2	99	92.520	ENSSPUG00000014544	UPF2	99	92.520	Sphenodon_punctatus
ENSGAGG00000002700	UPF2	68	94.361	ENSSSCG00000011117	-	100	100.000	Sus_scrofa
ENSGAGG00000002700	UPF2	99	95.189	ENSTGUG00000002163	-	100	95.189	Taeniopygia_guttata
ENSGAGG00000002700	UPF2	100	81.620	ENSTRUG00000007519	UPF2	99	81.903	Takifugu_rubripes
ENSGAGG00000002700	UPF2	100	79.471	ENSTNIG00000004453	UPF2	100	79.517	Tetraodon_nigroviridis
ENSGAGG00000002700	UPF2	93	85.690	ENSTBEG00000012679	UPF2	93	85.859	Tupaia_belangeri
ENSGAGG00000002700	UPF2	100	93.076	ENSTTRG00000016388	UPF2	100	92.762	Tursiops_truncatus
ENSGAGG00000002700	UPF2	92	97.222	ENSUAMG00000023560	UPF2	98	100.000	Ursus_americanus
ENSGAGG00000002700	UPF2	100	93.627	ENSUMAG00000012953	UPF2	95	93.627	Ursus_maritimus
ENSGAGG00000002700	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSGAGG00000002700	UPF2	100	93.627	ENSVVUG00000006166	UPF2	100	93.627	Vulpes_vulpes
ENSGAGG00000002700	UPF2	100	84.091	ENSXETG00000033103	UPF2	91	88.678	Xenopus_tropicalis
ENSGAGG00000002700	UPF2	92	84.786	ENSXCOG00000011604	UPF2	100	81.719	Xiphophorus_couchianus
ENSGAGG00000002700	UPF2	92	84.983	ENSXMAG00000017209	UPF2	100	81.747	Xiphophorus_maculatus