EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000002763 (Gene tree)
Gene ID: -
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 23942 bases
Position: chrPPEB01001566.1:13104-37045
Accession: 9348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000003416	zf-C2H2	PF00096.26	2.2e-19	1	3
ENSGAGP00000003416	zf-C2H2	PF00096.26	2.2e-19	2	3
ENSGAGP00000003416	zf-C2H2	PF00096.26	2.2e-19	3	3
ENSGAGP00000003416	zf-met	PF12874.7	5.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000003939	PRDM4-201	2740	-	ENSGAGP00000003416	839 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000002763's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000002763's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000002763	PRDM4	51	34.979	ENSGAGG00000022082	PRDM15	71	34.568

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000002763	PRDM4	95	87.469	ENSG00000110851	PRDM4	96	94.444	Homo_sapiens
ENSGAGG00000002763	PRDM4	95	87.905	ENSAMEG00000016174	PRDM4	100	88.030	Ailuropoda_melanoleuca
ENSGAGG00000002763	PRDM4	95	90.113	ENSAPLG00000009846	PRDM4	100	90.113	Anas_platyrhynchos
ENSGAGG00000002763	PRDM4	95	87.469	ENSANAG00000024800	PRDM4	99	87.093	Aotus_nancymaae
ENSGAGG00000002763	PRDM4	95	87.970	ENSBTAG00000012999	PRDM4	99	87.970	Bos_taurus
ENSGAGG00000002763	PRDM4	95	86.967	ENSCJAG00000015261	PRDM4	99	87.343	Callithrix_jacchus
ENSGAGG00000002763	PRDM4	95	87.970	ENSCAFG00000001788	PRDM4	100	87.890	Canis_familiaris
ENSGAGG00000002763	PRDM4	95	87.970	ENSCAFG00020004916	PRDM4	99	88.471	Canis_lupus_dingo
ENSGAGG00000002763	PRDM4	95	87.719	ENSCHIG00000019409	PRDM4	99	88.221	Capra_hircus
ENSGAGG00000002763	PRDM4	95	87.469	ENSTSYG00000009248	PRDM4	99	87.469	Carlito_syrichta
ENSGAGG00000002763	PRDM4	95	83.730	ENSCAPG00000013937	PRDM4	99	83.730	Cavia_aperea
ENSGAGG00000002763	PRDM4	95	83.230	ENSCPOG00000022385	PRDM4	100	83.230	Cavia_porcellus
ENSGAGG00000002763	PRDM4	95	87.594	ENSCCAG00000036033	PRDM4	99	87.970	Cebus_capucinus
ENSGAGG00000002763	PRDM4	95	87.469	ENSCATG00000044797	PRDM4	99	87.845	Cercocebus_atys
ENSGAGG00000002763	PRDM4	95	84.701	ENSCLAG00000007545	PRDM4	100	84.950	Chinchilla_lanigera
ENSGAGG00000002763	PRDM4	95	87.594	ENSCSAG00000002896	PRDM4	99	87.970	Chlorocebus_sabaeus
ENSGAGG00000002763	PRDM4	67	92.523	ENSCHOG00000001744	PRDM4	85	92.523	Choloepus_hoffmanni
ENSGAGG00000002763	PRDM4	95	98.615	ENSCPBG00000023187	PRDM4	100	98.615	Chrysemys_picta_bellii
ENSGAGG00000002763	PRDM4	95	87.594	ENSCANG00000021804	PRDM4	99	87.970	Colobus_angolensis_palliatus
ENSGAGG00000002763	PRDM4	95	84.913	ENSCGRG00001015102	-	100	85.037	Cricetulus_griseus_chok1gshd
ENSGAGG00000002763	PRDM4	91	84.864	ENSCGRG00000004044	-	100	84.864	Cricetulus_griseus_crigri
ENSGAGG00000002763	PRDM4	95	86.466	ENSDNOG00000032478	PRDM4	99	87.626	Dasypus_novemcinctus
ENSGAGG00000002763	PRDM4	95	74.153	ENSDORG00000015081	-	100	74.279	Dipodomys_ordii
ENSGAGG00000002763	PRDM4	90	46.025	ENSEBUG00000003775	prdm4	99	46.006	Eptatretus_burgeri
ENSGAGG00000002763	PRDM4	95	87.970	ENSECAG00000015423	PRDM4	99	88.471	Equus_caballus
ENSGAGG00000002763	PRDM4	89	86.382	ENSEEUG00000006569	PRDM4	99	86.515	Erinaceus_europaeus
ENSGAGG00000002763	PRDM4	95	59.903	ENSELUG00000015265	prdm4	94	61.647	Esox_lucius
ENSGAGG00000002763	PRDM4	95	87.845	ENSFCAG00000022478	PRDM4	99	88.346	Felis_catus
ENSGAGG00000002763	PRDM4	95	91.834	ENSFALG00000013342	PRDM4	100	91.834	Ficedula_albicollis
ENSGAGG00000002763	PRDM4	95	90.637	ENSGALG00000012619	PRDM4	100	90.637	Gallus_gallus
ENSGAGG00000002763	PRDM4	95	87.594	ENSGGOG00000001244	PRDM4	99	87.970	Gorilla_gorilla
ENSGAGG00000002763	PRDM4	95	86.055	ENSHGLG00000004590	PRDM4	98	86.055	Heterocephalus_glaber_female
ENSGAGG00000002763	PRDM4	95	85.199	ENSHGLG00100007464	PRDM4	100	85.199	Heterocephalus_glaber_male
ENSGAGG00000002763	PRDM4	90	61.578	ENSIPUG00000024162	prdm4	94	61.320	Ictalurus_punctatus
ENSGAGG00000002763	PRDM4	95	87.266	ENSSTOG00000016168	PRDM4	100	87.266	Ictidomys_tridecemlineatus
ENSGAGG00000002763	PRDM4	75	86.792	ENSJJAG00000022448	-	95	84.595	Jaculus_jaculus
ENSGAGG00000002763	PRDM4	95	74.381	ENSLACG00000007452	PRDM4	99	74.505	Latimeria_chalumnae
ENSGAGG00000002763	PRDM4	74	41.995	ENSLOCG00000017092	prdm4	93	55.411	Lepisosteus_oculatus
ENSGAGG00000002763	PRDM4	93	87.563	ENSLAFG00000001483	PRDM4	100	87.563	Loxodonta_africana
ENSGAGG00000002763	PRDM4	95	87.719	ENSMFAG00000041862	PRDM4	99	88.095	Macaca_fascicularis
ENSGAGG00000002763	PRDM4	95	87.719	ENSMMUG00000015550	PRDM4	99	88.095	Macaca_mulatta
ENSGAGG00000002763	PRDM4	95	87.719	ENSMNEG00000032319	PRDM4	99	88.095	Macaca_nemestrina
ENSGAGG00000002763	PRDM4	95	87.594	ENSMLEG00000039607	PRDM4	99	87.970	Mandrillus_leucophaeus
ENSGAGG00000002763	PRDM4	95	82.456	ENSMGAG00000012815	PRDM4	100	82.456	Meleagris_gallopavo
ENSGAGG00000002763	PRDM4	95	86.341	ENSMICG00000007807	PRDM4	99	86.341	Microcebus_murinus
ENSGAGG00000002763	PRDM4	95	85.375	ENSMOCG00000000753	Prdm4	99	85.750	Microtus_ochrogaster
ENSGAGG00000002763	PRDM4	95	86.683	ENSMUSG00000035529	Prdm4	100	86.809	Mus_musculus
ENSGAGG00000002763	PRDM4	95	85.696	MGP_PahariEiJ_G0031398	Prdm4	100	86.277	Mus_pahari
ENSGAGG00000002763	PRDM4	95	86.575	MGP_SPRETEiJ_G0016505	Prdm4	100	87.039	Mus_spretus
ENSGAGG00000002763	PRDM4	95	81.615	ENSMPUG00000012238	PRDM4	100	81.796	Mustela_putorius_furo
ENSGAGG00000002763	PRDM4	95	87.016	ENSMLUG00000000767	PRDM4	100	87.516	Myotis_lucifugus
ENSGAGG00000002763	PRDM4	95	86.198	ENSNGAG00000018627	Prdm4	100	86.198	Nannospalax_galili
ENSGAGG00000002763	PRDM4	95	87.343	ENSNLEG00000006748	PRDM4	99	87.719	Nomascus_leucogenys
ENSGAGG00000002763	PRDM4	85	85.681	ENSMEUG00000004495	PRDM4	89	85.681	Notamacropus_eugenii
ENSGAGG00000002763	PRDM4	84	86.905	ENSOPRG00000010192	PRDM4	89	86.905	Ochotona_princeps
ENSGAGG00000002763	PRDM4	95	85.050	ENSODEG00000014750	PRDM4	99	84.296	Octodon_degus
ENSGAGG00000002763	PRDM4	95	87.970	ENSOANG00000005526	PRDM4	99	88.095	Ornithorhynchus_anatinus
ENSGAGG00000002763	PRDM4	89	88.841	ENSOCUG00000012859	PRDM4	96	88.841	Oryctolagus_cuniculus
ENSGAGG00000002763	PRDM4	95	87.202	ENSOGAG00000011945	PRDM4	100	86.951	Otolemur_garnettii
ENSGAGG00000002763	PRDM4	95	87.343	ENSOARG00000017955	PRDM4	99	87.845	Ovis_aries
ENSGAGG00000002763	PRDM4	95	87.594	ENSPPAG00000038438	PRDM4	99	87.970	Pan_paniscus
ENSGAGG00000002763	PRDM4	95	87.845	ENSPPRG00000004144	PRDM4	99	88.346	Panthera_pardus
ENSGAGG00000002763	PRDM4	95	87.845	ENSPTIG00000005847	PRDM4	99	88.346	Panthera_tigris_altaica
ENSGAGG00000002763	PRDM4	95	87.594	ENSPTRG00000005400	PRDM4	99	87.970	Pan_troglodytes
ENSGAGG00000002763	PRDM4	95	87.719	ENSPANG00000022084	PRDM4	99	88.095	Papio_anubis
ENSGAGG00000002763	PRDM4	94	59.264	ENSPKIG00000000875	prdm4	99	59.857	Paramormyrops_kingsleyae
ENSGAGG00000002763	PRDM4	84	98.343	ENSPSIG00000012066	PRDM4	100	98.343	Pelodiscus_sinensis
ENSGAGG00000002763	PRDM4	95	86.575	ENSPEMG00000014598	Prdm4	100	86.073	Peromyscus_maniculatus_bairdii
ENSGAGG00000002763	PRDM4	95	85.268	ENSPCIG00000009471	PRDM4	99	85.268	Phascolarctos_cinereus
ENSGAGG00000002763	PRDM4	95	87.594	ENSPPYG00000004913	PRDM4	99	87.970	Pongo_abelii
ENSGAGG00000002763	PRDM4	79	91.111	ENSPCAG00000009987	PRDM4	83	91.111	Procavia_capensis
ENSGAGG00000002763	PRDM4	95	86.591	ENSPCOG00000021060	PRDM4	99	86.591	Propithecus_coquereli
ENSGAGG00000002763	PRDM4	95	87.359	ENSPVAG00000001596	PRDM4	99	87.985	Pteropus_vampyrus
ENSGAGG00000002763	PRDM4	95	86.090	ENSRNOG00000004962	Prdm4	100	85.714	Rattus_norvegicus
ENSGAGG00000002763	PRDM4	95	87.845	ENSRBIG00000035488	PRDM4	99	88.221	Rhinopithecus_bieti
ENSGAGG00000002763	PRDM4	95	87.719	ENSRROG00000012779	PRDM4	99	88.095	Rhinopithecus_roxellana
ENSGAGG00000002763	PRDM4	95	87.469	ENSSBOG00000000403	PRDM4	99	87.845	Saimiri_boliviensis_boliviensis
ENSGAGG00000002763	PRDM4	95	63.715	ENSSFOG00015023358	prdm4	99	63.838	Scleropages_formosus
ENSGAGG00000002763	PRDM4	95	87.719	ENSSSCG00000000160	PRDM4	99	88.346	Sus_scrofa
ENSGAGG00000002763	PRDM4	95	91.970	ENSTGUG00000010962	-	100	91.625	Taeniopygia_guttata
ENSGAGG00000002763	PRDM4	70	81.399	ENSTBEG00000001732	PRDM4	84	81.399	Tupaia_belangeri
ENSGAGG00000002763	PRDM4	95	86.967	ENSTTRG00000011056	PRDM4	99	87.469	Tursiops_truncatus
ENSGAGG00000002763	PRDM4	95	87.970	ENSUAMG00000022796	PRDM4	99	88.471	Ursus_americanus
ENSGAGG00000002763	PRDM4	95	87.970	ENSUMAG00000017231	PRDM4	99	88.471	Ursus_maritimus
ENSGAGG00000002763	PRDM4	95	87.955	ENSVPAG00000002215	PRDM4	100	87.955	Vicugna_pacos
ENSGAGG00000002763	PRDM4	95	87.970	ENSVVUG00000023397	PRDM4	99	88.471	Vulpes_vulpes