EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000003214 (Gene tree)
Gene ID: -
Gene Symbol: PATZ1
Alias: MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23
Full Name: POZ/BTB and AT hook containing zinc finger 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 22780 bases
Position: chrPPEB01001423.1:238101-260880
Accession: 13071
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000003926	zf-C2H2	PF00096.26	3.8e-28	1	5
ENSGAGP00000003926	zf-C2H2	PF00096.26	3.8e-28	2	5
ENSGAGP00000003926	zf-C2H2	PF00096.26	3.8e-28	3	5
ENSGAGP00000003926	zf-C2H2	PF00096.26	3.8e-28	4	5
ENSGAGP00000003926	zf-C2H2	PF00096.26	3.8e-28	5	5
ENSGAGP00000003924	zf-C2H2	PF00096.26	3.8e-27	1	5
ENSGAGP00000003924	zf-C2H2	PF00096.26	3.8e-27	2	5
ENSGAGP00000003924	zf-C2H2	PF00096.26	3.8e-27	3	5
ENSGAGP00000003924	zf-C2H2	PF00096.26	3.8e-27	4	5
ENSGAGP00000003924	zf-C2H2	PF00096.26	3.8e-27	5	5
ENSGAGP00000003927	zf-C2H2	PF00096.26	8.7e-21	1	4
ENSGAGP00000003927	zf-C2H2	PF00096.26	8.7e-21	2	4
ENSGAGP00000003927	zf-C2H2	PF00096.26	8.7e-21	3	4
ENSGAGP00000003927	zf-C2H2	PF00096.26	8.7e-21	4	4
ENSGAGP00000003926	zf-met	PF12874.7	4.2e-12	1	1
ENSGAGP00000003924	zf-met	PF12874.7	1.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000004566	PATZ1-202	2074	-	ENSGAGP00000003926	578 (aa)	-	-
ENSGAGT00000004564	PATZ1-201	2146	-	ENSGAGP00000003924	602 (aa)	-	-
ENSGAGT00000004568	PATZ1-203	1715	-	ENSGAGP00000003927	556 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000003214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000003214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000003214	PATZ1	64	35.882	ENSGAGG00000020362	PRDM5	53	37.126
ENSGAGG00000003214	PATZ1	69	32.727	ENSGAGG00000022082	PRDM15	54	32.727

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000003214	PATZ1	100	91.767	ENSG00000100105	PATZ1	85	91.938	Homo_sapiens
ENSGAGG00000003214	PATZ1	100	58.371	ENSAPOG00000018447	patz1	89	60.338	Acanthochromis_polyacanthus
ENSGAGG00000003214	PATZ1	100	91.081	ENSAMEG00000007074	PATZ1	85	92.110	Ailuropoda_melanoleuca
ENSGAGG00000003214	PATZ1	100	57.355	ENSACIG00000016779	patz1	87	57.355	Amphilophus_citrinellus
ENSGAGG00000003214	PATZ1	100	58.525	ENSAPEG00000013354	patz1	88	58.525	Amphiprion_percula
ENSGAGG00000003214	PATZ1	100	62.419	ENSATEG00000011260	patz1	88	58.251	Anabas_testudineus
ENSGAGG00000003214	PATZ1	100	97.059	ENSAPLG00000003934	PATZ1	99	97.059	Anas_platyrhynchos
ENSGAGG00000003214	PATZ1	100	91.767	ENSANAG00000029603	PATZ1	85	91.938	Aotus_nancymaae
ENSGAGG00000003214	PATZ1	99	62.156	ENSAMXG00000002273	patz1	87	53.981	Astyanax_mexicanus
ENSGAGG00000003214	PATZ1	100	90.909	ENSBTAG00000005478	PATZ1	85	91.938	Bos_taurus
ENSGAGG00000003214	PATZ1	100	91.767	ENSCJAG00000010978	PATZ1	85	91.938	Callithrix_jacchus
ENSGAGG00000003214	PATZ1	100	91.081	ENSCAFG00000013087	PATZ1	85	92.110	Canis_familiaris
ENSGAGG00000003214	PATZ1	100	90.566	ENSCHIG00000020203	PATZ1	85	91.595	Capra_hircus
ENSGAGG00000003214	PATZ1	100	91.767	ENSTSYG00000033183	PATZ1	85	91.938	Carlito_syrichta
ENSGAGG00000003214	PATZ1	100	91.767	ENSCCAG00000028772	PATZ1	85	91.938	Cebus_capucinus
ENSGAGG00000003214	PATZ1	100	91.938	ENSCATG00000006101	PATZ1	85	92.110	Cercocebus_atys
ENSGAGG00000003214	PATZ1	100	99.502	ENSCPBG00000011277	PATZ1	85	99.502	Chrysemys_picta_bellii
ENSGAGG00000003214	PATZ1	100	91.938	ENSCANG00000024972	PATZ1	85	92.110	Colobus_angolensis_palliatus
ENSGAGG00000003214	PATZ1	100	89.708	ENSCGRG00001004071	Patz1	84	89.880	Cricetulus_griseus_chok1gshd
ENSGAGG00000003214	PATZ1	100	91.424	ENSCGRG00000004814	Patz1	91	91.595	Cricetulus_griseus_crigri
ENSGAGG00000003214	PATZ1	100	54.886	ENSCSEG00000001385	patz1	88	55.267	Cynoglossus_semilaevis
ENSGAGG00000003214	PATZ1	100	57.990	ENSCVAG00000007684	patz1	88	58.320	Cyprinodon_variegatus
ENSGAGG00000003214	PATZ1	99	58.531	ENSDARG00000076584	patz1	86	57.118	Danio_rerio
ENSGAGG00000003214	PATZ1	88	89.903	ENSDNOG00000003183	PATZ1	83	91.068	Dasypus_novemcinctus
ENSGAGG00000003214	PATZ1	100	91.252	ENSDORG00000023834	Patz1	85	92.281	Dipodomys_ordii
ENSGAGG00000003214	PATZ1	100	91.767	ENSECAG00000025030	PATZ1	85	91.938	Equus_caballus
ENSGAGG00000003214	PATZ1	99	59.821	ENSELUG00000002333	patz1	90	60.625	Esox_lucius
ENSGAGG00000003214	PATZ1	100	91.081	ENSFCAG00000030253	PATZ1	85	92.110	Felis_catus
ENSGAGG00000003214	PATZ1	100	97.578	ENSFALG00000007450	PATZ1	99	97.578	Ficedula_albicollis
ENSGAGG00000003214	PATZ1	100	86.473	ENSFDAG00000005614	PATZ1	88	87.671	Fukomys_damarensis
ENSGAGG00000003214	PATZ1	100	57.259	ENSFHEG00000014755	patz1	87	57.259	Fundulus_heteroclitus
ENSGAGG00000003214	PATZ1	98	54.976	ENSGMOG00000001062	patz1	87	54.839	Gadus_morhua
ENSGAGG00000003214	PATZ1	100	97.232	ENSGALG00000006934	PATZ1	84	97.232	Gallus_gallus
ENSGAGG00000003214	PATZ1	100	56.944	ENSGAFG00000010053	patz1	87	55.408	Gambusia_affinis
ENSGAGG00000003214	PATZ1	100	91.938	ENSGGOG00000017171	PATZ1	85	92.110	Gorilla_gorilla
ENSGAGG00000003214	PATZ1	100	58.486	ENSHCOG00000017644	patz1	89	58.945	Hippocampus_comes
ENSGAGG00000003214	PATZ1	99	57.210	ENSIPUG00000017653	patz1	87	53.181	Ictalurus_punctatus
ENSGAGG00000003214	PATZ1	100	90.909	ENSSTOG00000020707	PATZ1	85	91.938	Ictidomys_tridecemlineatus
ENSGAGG00000003214	PATZ1	100	90.068	ENSJJAG00000015259	Patz1	85	90.411	Jaculus_jaculus
ENSGAGG00000003214	PATZ1	100	57.550	ENSKMAG00000008157	patz1	87	57.667	Kryptolebias_marmoratus
ENSGAGG00000003214	PATZ1	100	90.909	ENSLAFG00000002317	PATZ1	86	91.938	Loxodonta_africana
ENSGAGG00000003214	PATZ1	100	91.938	ENSMFAG00000040968	PATZ1	85	92.110	Macaca_fascicularis
ENSGAGG00000003214	PATZ1	100	91.938	ENSMNEG00000037588	PATZ1	85	92.110	Macaca_nemestrina
ENSGAGG00000003214	PATZ1	100	91.938	ENSMLEG00000030938	PATZ1	85	92.110	Mandrillus_leucophaeus
ENSGAGG00000003214	PATZ1	100	57.302	ENSMAMG00000023652	patz1	89	57.302	Mastacembelus_armatus
ENSGAGG00000003214	PATZ1	100	93.253	ENSMGAG00000008439	PATZ1	99	93.253	Meleagris_gallopavo
ENSGAGG00000003214	PATZ1	100	91.595	ENSMAUG00000004129	Patz1	85	91.767	Mesocricetus_auratus
ENSGAGG00000003214	PATZ1	100	92.110	ENSMICG00000005430	PATZ1	85	92.281	Microcebus_murinus
ENSGAGG00000003214	PATZ1	100	91.595	ENSMOCG00000014488	Patz1	85	91.767	Microtus_ochrogaster
ENSGAGG00000003214	PATZ1	77	54.605	ENSMMOG00000021679	patz1	57	54.605	Mola_mola
ENSGAGG00000003214	PATZ1	100	56.977	ENSMALG00000021172	patz1	88	56.977	Monopterus_albus
ENSGAGG00000003214	PATZ1	100	91.252	MGP_CAROLIEiJ_G0016007	Patz1	85	91.424	Mus_caroli
ENSGAGG00000003214	PATZ1	100	91.424	ENSMUSG00000020453	Patz1	85	91.595	Mus_musculus
ENSGAGG00000003214	PATZ1	100	91.424	MGP_PahariEiJ_G0016884	Patz1	85	91.595	Mus_pahari
ENSGAGG00000003214	PATZ1	100	91.424	MGP_SPRETEiJ_G0016846	Patz1	85	91.595	Mus_spretus
ENSGAGG00000003214	PATZ1	100	90.909	ENSMLUG00000009942	PATZ1	85	91.938	Myotis_lucifugus
ENSGAGG00000003214	PATZ1	100	91.767	ENSNGAG00000010268	Patz1	85	91.938	Nannospalax_galili
ENSGAGG00000003214	PATZ1	100	58.581	ENSNBRG00000016032	patz1	88	58.581	Neolamprologus_brichardi
ENSGAGG00000003214	PATZ1	80	93.548	ENSMEUG00000016293	PATZ1	100	93.548	Notamacropus_eugenii
ENSGAGG00000003214	PATZ1	100	91.767	ENSODEG00000003589	PATZ1	85	91.767	Octodon_degus
ENSGAGG00000003214	PATZ1	100	55.829	ENSONIG00000004248	patz1	87	55.829	Oreochromis_niloticus
ENSGAGG00000003214	PATZ1	100	92.466	ENSOANG00000014654	PATZ1	85	92.637	Ornithorhynchus_anatinus
ENSGAGG00000003214	PATZ1	100	56.034	ENSORLG00020010937	patz1	88	55.660	Oryzias_latipes_hni
ENSGAGG00000003214	PATZ1	100	55.591	ENSORLG00015007396	patz1	88	55.591	Oryzias_latipes_hsok
ENSGAGG00000003214	PATZ1	100	55.760	ENSOMEG00000006636	patz1	87	55.760	Oryzias_melastigma
ENSGAGG00000003214	PATZ1	100	91.767	ENSOGAG00000027905	PATZ1	85	91.938	Otolemur_garnettii
ENSGAGG00000003214	PATZ1	100	91.938	ENSPPAG00000033227	PATZ1	85	92.110	Pan_paniscus
ENSGAGG00000003214	PATZ1	100	91.081	ENSPPRG00000001573	PATZ1	85	92.110	Panthera_pardus
ENSGAGG00000003214	PATZ1	100	91.081	ENSPTIG00000007937	PATZ1	89	92.110	Panthera_tigris_altaica
ENSGAGG00000003214	PATZ1	100	91.938	ENSPTRG00000014268	PATZ1	85	92.110	Pan_troglodytes
ENSGAGG00000003214	PATZ1	100	91.938	ENSPANG00000006821	PATZ1	85	92.110	Papio_anubis
ENSGAGG00000003214	PATZ1	100	63.182	ENSPKIG00000019584	patz1	90	63.182	Paramormyrops_kingsleyae
ENSGAGG00000003214	PATZ1	69	99.242	ENSPSIG00000011562	-	100	99.242	Pelodiscus_sinensis
ENSGAGG00000003214	PATZ1	70	90.686	ENSPSIG00000016553	-	91	90.686	Pelodiscus_sinensis
ENSGAGG00000003214	PATZ1	100	57.380	ENSPMGG00000010196	patz1	88	57.380	Periophthalmus_magnuspinnatus
ENSGAGG00000003214	PATZ1	100	91.595	ENSPEMG00000005321	Patz1	85	91.595	Peromyscus_maniculatus_bairdii
ENSGAGG00000003214	PATZ1	100	57.541	ENSPLAG00000010425	patz1	100	57.800	Poecilia_latipinna
ENSGAGG00000003214	PATZ1	100	56.645	ENSPMEG00000000255	patz1	87	56.240	Poecilia_mexicana
ENSGAGG00000003214	PATZ1	100	57.327	ENSPREG00000002440	patz1	88	56.935	Poecilia_reticulata
ENSGAGG00000003214	PATZ1	100	91.767	ENSPPYG00000011732	PATZ1	85	91.938	Pongo_abelii
ENSGAGG00000003214	PATZ1	100	91.938	ENSPCOG00000019729	PATZ1	85	92.110	Propithecus_coquereli
ENSGAGG00000003214	PATZ1	100	91.081	ENSPVAG00000001749	PATZ1	85	92.110	Pteropus_vampyrus
ENSGAGG00000003214	PATZ1	100	59.187	ENSPNYG00000013542	patz1	88	59.187	Pundamilia_nyererei
ENSGAGG00000003214	PATZ1	99	58.891	ENSPNAG00000017222	patz1	99	58.891	Pygocentrus_nattereri
ENSGAGG00000003214	PATZ1	100	91.938	ENSRBIG00000044231	PATZ1	85	92.110	Rhinopithecus_bieti
ENSGAGG00000003214	PATZ1	100	91.938	ENSRROG00000037155	PATZ1	85	92.110	Rhinopithecus_roxellana
ENSGAGG00000003214	PATZ1	100	91.767	ENSSBOG00000003894	PATZ1	85	91.938	Saimiri_boliviensis_boliviensis
ENSGAGG00000003214	PATZ1	77	92.857	ENSSFOG00015013244	patz1	67	92.857	Scleropages_formosus
ENSGAGG00000003214	PATZ1	100	97.074	ENSSPUG00000015298	PATZ1	84	96.694	Sphenodon_punctatus
ENSGAGG00000003214	PATZ1	100	90.566	ENSSSCG00000010027	PATZ1	100	91.595	Sus_scrofa
ENSGAGG00000003214	PATZ1	100	58.080	ENSTRUG00000015366	patz1	88	58.080	Takifugu_rubripes
ENSGAGG00000003214	PATZ1	100	91.081	ENSTTRG00000010279	PATZ1	85	92.110	Tursiops_truncatus
ENSGAGG00000003214	PATZ1	100	86.809	ENSUAMG00000015014	PATZ1	84	87.879	Ursus_americanus
ENSGAGG00000003214	PATZ1	100	75.601	ENSXETG00000004190	patz1	88	75.601	Xenopus_tropicalis
ENSGAGG00000003214	PATZ1	100	56.739	ENSXMAG00000015531	patz1	87	56.240	Xiphophorus_maculatus