EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000004276 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 42029 bases
Position: chrPPEB01009706.1:10837-52865
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000011521	CPSF_A	PF03178.15	5.1e-72	1	1
ENSGAGP00000011536	CPSF_A	PF03178.15	1.4e-70	1	1
ENSGAGP00000011688	CPSF_A	PF03178.15	1.9e-68	1	2
ENSGAGP00000011688	CPSF_A	PF03178.15	1.9e-68	2	2
ENSGAGP00000012152	CPSF_A	PF03178.15	3.1e-57	1	2
ENSGAGP00000012152	CPSF_A	PF03178.15	3.1e-57	2	2
ENSGAGP00000012192	CPSF_A	PF03178.15	2.5e-55	1	1
ENSGAGP00000011308	CPSF_A	PF03178.15	2.6e-52	1	1
ENSGAGP00000011728	CPSF_A	PF03178.15	3.6e-47	1	2
ENSGAGP00000011728	CPSF_A	PF03178.15	3.6e-47	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000013918	CPSF1-206	3594	-	ENSGAGP00000012152	1197 (aa)	-	-
ENSGAGT00000012951	CPSF1-201	4308	-	ENSGAGP00000011308	1435 (aa)	-	-
ENSGAGT00000013966	CPSF1-207	3871	-	ENSGAGP00000012192	1214 (aa)	-	-
ENSGAGT00000013209	CPSF1-203	4260	-	ENSGAGP00000011536	1419 (aa)	-	-
ENSGAGT00000013434	CPSF1-205	4101	-	ENSGAGP00000011728	1366 (aa)	-	-
ENSGAGT00000013390	CPSF1-204	4146	-	ENSGAGP00000011688	1381 (aa)	-	-
ENSGAGT00000013193	CPSF1-202	4296	-	ENSGAGP00000011521	1431 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000004276's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000004276's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000004276	CPSF1	98	87.259	ENSG00000071894	CPSF1	100	83.621	Homo_sapiens
ENSGAGG00000004276	CPSF1	98	80.212	ENSAPOG00000019621	cpsf1	100	76.939	Acanthochromis_polyacanthus
ENSGAGG00000004276	CPSF1	98	88.087	ENSAMEG00000005557	CPSF1	100	82.349	Ailuropoda_melanoleuca
ENSGAGG00000004276	CPSF1	98	80.570	ENSACIG00000006112	cpsf1	100	77.066	Amphilophus_citrinellus
ENSGAGG00000004276	CPSF1	98	81.364	ENSAOCG00000007120	cpsf1	100	78.369	Amphiprion_ocellaris
ENSGAGG00000004276	CPSF1	98	82.377	ENSAPEG00000005755	cpsf1	100	78.326	Amphiprion_percula
ENSGAGG00000004276	CPSF1	98	80.569	ENSATEG00000011097	cpsf1	100	77.172	Anabas_testudineus
ENSGAGG00000004276	CPSF1	89	97.163	ENSACAG00000009655	CPSF1	85	97.163	Anolis_carolinensis
ENSGAGG00000004276	CPSF1	98	87.500	ENSANAG00000036514	CPSF1	100	83.748	Aotus_nancymaae
ENSGAGG00000004276	CPSF1	98	80.750	ENSACLG00000012231	cpsf1	99	77.474	Astatotilapia_calliptera
ENSGAGG00000004276	CPSF1	100	73.380	ENSAMXG00000008485	cpsf1	100	73.451	Astyanax_mexicanus
ENSGAGG00000004276	CPSF1	98	87.573	ENSBTAG00000008355	CPSF1	100	82.721	Bos_taurus
ENSGAGG00000004276	CPSF1	100	30.982	WBGene00022301	cpsf-1	99	36.620	Caenorhabditis_elegans
ENSGAGG00000004276	CPSF1	98	87.332	ENSCJAG00000021421	CPSF1	95	90.196	Callithrix_jacchus
ENSGAGG00000004276	CPSF1	98	88.245	ENSCAFG00000001600	CPSF1	100	84.046	Canis_familiaris
ENSGAGG00000004276	CPSF1	98	88.245	ENSCAFG00020020821	CPSF1	100	84.207	Canis_lupus_dingo
ENSGAGG00000004276	CPSF1	98	85.726	ENSCHIG00000015833	CPSF1	100	82.424	Capra_hircus
ENSGAGG00000004276	CPSF1	98	88.087	ENSTSYG00000028560	CPSF1	100	84.440	Carlito_syrichta
ENSGAGG00000004276	CPSF1	97	86.746	ENSCAPG00000014921	CPSF1	99	82.771	Cavia_aperea
ENSGAGG00000004276	CPSF1	97	86.746	ENSCPOG00000011448	CPSF1	100	82.089	Cavia_porcellus
ENSGAGG00000004276	CPSF1	98	87.500	ENSCCAG00000037658	CPSF1	100	83.817	Cebus_capucinus
ENSGAGG00000004276	CPSF1	98	87.332	ENSCATG00000037234	CPSF1	99	88.657	Cercocebus_atys
ENSGAGG00000004276	CPSF1	98	87.573	ENSCLAG00000012166	CPSF1	100	83.945	Chinchilla_lanigera
ENSGAGG00000004276	CPSF1	98	87.332	ENSCSAG00000008502	CPSF1	100	83.610	Chlorocebus_sabaeus
ENSGAGG00000004276	CPSF1	98	98.908	ENSCPBG00000018910	CPSF1	96	93.510	Chrysemys_picta_bellii
ENSGAGG00000004276	CPSF1	98	48.213	ENSCING00000000514	-	100	47.143	Ciona_intestinalis
ENSGAGG00000004276	CPSF1	98	49.046	ENSCSAVG00000002293	-	99	51.540	Ciona_savignyi
ENSGAGG00000004276	CPSF1	97	85.000	ENSCANG00000032760	CPSF1	99	80.788	Colobus_angolensis_palliatus
ENSGAGG00000004276	CPSF1	98	87.741	ENSCGRG00001016344	Cpsf1	100	84.083	Cricetulus_griseus_chok1gshd
ENSGAGG00000004276	CPSF1	98	85.306	ENSCGRG00000003118	Cpsf1	100	82.076	Cricetulus_griseus_crigri
ENSGAGG00000004276	CPSF1	98	81.391	ENSCSEG00000013464	cpsf1	100	77.024	Cynoglossus_semilaevis
ENSGAGG00000004276	CPSF1	87	79.896	ENSCVAG00000014059	cpsf1	89	75.832	Cyprinodon_variegatus
ENSGAGG00000004276	CPSF1	98	81.667	ENSDARG00000034178	cpsf1	100	77.816	Danio_rerio
ENSGAGG00000004276	CPSF1	60	89.565	ENSDNOG00000043654	CPSF1	94	89.565	Dasypus_novemcinctus
ENSGAGG00000004276	CPSF1	98	87.657	ENSDORG00000006278	Cpsf1	99	83.931	Dipodomys_ordii
ENSGAGG00000004276	CPSF1	99	45.192	FBgn0024698	Cpsf160	100	42.971	Drosophila_melanogaster
ENSGAGG00000004276	CPSF1	82	80.157	ENSETEG00000006022	CPSF1	82	80.845	Echinops_telfairi
ENSGAGG00000004276	CPSF1	98	88.077	ENSEASG00005010774	CPSF1	100	84.323	Equus_asinus_asinus
ENSGAGG00000004276	CPSF1	98	88.161	ENSECAG00000022209	CPSF1	100	84.392	Equus_caballus
ENSGAGG00000004276	CPSF1	98	87.668	ENSEEUG00000000471	CPSF1	100	83.610	Erinaceus_europaeus
ENSGAGG00000004276	CPSF1	98	79.604	ENSELUG00000012271	cpsf1	100	77.413	Esox_lucius
ENSGAGG00000004276	CPSF1	98	87.825	ENSFDAG00000016060	CPSF1	100	84.083	Fukomys_damarensis
ENSGAGG00000004276	CPSF1	98	81.182	ENSFHEG00000016801	cpsf1	100	77.135	Fundulus_heteroclitus
ENSGAGG00000004276	CPSF1	92	88.235	ENSGMOG00000000796	cpsf1	100	77.050	Gadus_morhua
ENSGAGG00000004276	CPSF1	98	81.636	ENSGAFG00000018890	cpsf1	97	86.275	Gambusia_affinis
ENSGAGG00000004276	CPSF1	98	81.115	ENSGACG00000008703	cpsf1	100	77.213	Gasterosteus_aculeatus
ENSGAGG00000004276	CPSF1	98	87.406	ENSGGOG00000016185	CPSF1	100	83.668	Gorilla_gorilla
ENSGAGG00000004276	CPSF1	98	82.245	ENSHBUG00000018900	cpsf1	100	78.547	Haplochromis_burtoni
ENSGAGG00000004276	CPSF1	98	87.573	ENSHGLG00000016139	CPSF1	100	83.945	Heterocephalus_glaber_female
ENSGAGG00000004276	CPSF1	98	87.490	ENSHGLG00100009750	CPSF1	100	83.875	Heterocephalus_glaber_male
ENSGAGG00000004276	CPSF1	98	79.167	ENSHCOG00000018509	cpsf1	100	75.289	Hippocampus_comes
ENSGAGG00000004276	CPSF1	98	78.304	ENSIPUG00000011259	cpsf1	100	75.463	Ictalurus_punctatus
ENSGAGG00000004276	CPSF1	98	87.040	ENSSTOG00000009957	CPSF1	99	83.619	Ictidomys_tridecemlineatus
ENSGAGG00000004276	CPSF1	99	87.250	ENSJJAG00000023002	Cpsf1	100	84.152	Jaculus_jaculus
ENSGAGG00000004276	CPSF1	87	92.466	ENSKMAG00000001940	cpsf1	100	75.319	Kryptolebias_marmoratus
ENSGAGG00000004276	CPSF1	98	79.163	ENSLBEG00000003601	cpsf1	100	76.300	Labrus_bergylta
ENSGAGG00000004276	CPSF1	88	77.419	ENSLACG00000000233	CPSF1	100	67.579	Latimeria_chalumnae
ENSGAGG00000004276	CPSF1	98	80.853	ENSLOCG00000008484	cpsf1	100	77.160	Lepisosteus_oculatus
ENSGAGG00000004276	CPSF1	98	88.161	ENSLAFG00000022601	CPSF1	99	83.883	Loxodonta_africana
ENSGAGG00000004276	CPSF1	98	87.332	ENSMFAG00000037013	CPSF1	99	88.358	Macaca_fascicularis
ENSGAGG00000004276	CPSF1	98	87.416	ENSMMUG00000007380	CPSF1	97	89.137	Macaca_mulatta
ENSGAGG00000004276	CPSF1	98	87.416	ENSMNEG00000043564	CPSF1	99	83.859	Macaca_nemestrina
ENSGAGG00000004276	CPSF1	98	87.416	ENSMLEG00000043010	CPSF1	99	88.358	Mandrillus_leucophaeus
ENSGAGG00000004276	CPSF1	98	80.456	ENSMAMG00000003803	cpsf1	100	77.208	Mastacembelus_armatus
ENSGAGG00000004276	CPSF1	98	80.067	ENSMZEG00005001168	cpsf1	100	76.125	Maylandia_zebra
ENSGAGG00000004276	CPSF1	98	87.825	ENSMAUG00000003601	Cpsf1	100	84.152	Mesocricetus_auratus
ENSGAGG00000004276	CPSF1	98	87.825	ENSMICG00000015767	CPSF1	100	83.829	Microcebus_murinus
ENSGAGG00000004276	CPSF1	98	87.657	ENSMOCG00000022758	Cpsf1	100	83.945	Microtus_ochrogaster
ENSGAGG00000004276	CPSF1	98	82.206	ENSMMOG00000021245	cpsf1	100	78.285	Mola_mola
ENSGAGG00000004276	CPSF1	98	89.958	ENSMODG00000010755	CPSF1	100	86.314	Monodelphis_domestica
ENSGAGG00000004276	CPSF1	98	79.690	ENSMALG00000020545	cpsf1	100	76.502	Monopterus_albus
ENSGAGG00000004276	CPSF1	98	88.077	MGP_CAROLIEiJ_G0019936	Cpsf1	100	84.360	Mus_caroli
ENSGAGG00000004276	CPSF1	98	88.077	ENSMUSG00000034022	Cpsf1	100	84.360	Mus_musculus
ENSGAGG00000004276	CPSF1	98	88.161	MGP_PahariEiJ_G0019946	Cpsf1	100	84.291	Mus_pahari
ENSGAGG00000004276	CPSF1	98	88.077	MGP_SPRETEiJ_G0020839	Cpsf1	100	84.360	Mus_spretus
ENSGAGG00000004276	CPSF1	98	87.657	ENSMPUG00000006419	CPSF1	93	83.988	Mustela_putorius_furo
ENSGAGG00000004276	CPSF1	98	88.161	ENSNGAG00000022460	Cpsf1	100	84.429	Nannospalax_galili
ENSGAGG00000004276	CPSF1	98	76.692	ENSNBRG00000000813	cpsf1	100	73.550	Neolamprologus_brichardi
ENSGAGG00000004276	CPSF1	81	93.750	ENSNLEG00000010633	-	99	74.213	Nomascus_leucogenys
ENSGAGG00000004276	CPSF1	83	86.373	ENSMEUG00000014922	CPSF1	83	86.667	Notamacropus_eugenii
ENSGAGG00000004276	CPSF1	63	92.063	ENSOPRG00000004693	-	70	92.063	Ochotona_princeps
ENSGAGG00000004276	CPSF1	98	87.825	ENSODEG00000013995	CPSF1	100	84.152	Octodon_degus
ENSGAGG00000004276	CPSF1	98	82.831	ENSONIG00000007676	cpsf1	100	78.690	Oreochromis_niloticus
ENSGAGG00000004276	CPSF1	63	87.176	ENSOANG00000010716	CPSF1	81	87.176	Ornithorhynchus_anatinus
ENSGAGG00000004276	CPSF1	98	80.640	ENSORLG00000013544	cpsf1	100	76.949	Oryzias_latipes
ENSGAGG00000004276	CPSF1	98	80.804	ENSORLG00020021693	cpsf1	100	77.085	Oryzias_latipes_hni
ENSGAGG00000004276	CPSF1	98	80.722	ENSORLG00015009979	cpsf1	100	77.017	Oryzias_latipes_hsok
ENSGAGG00000004276	CPSF1	98	81.445	ENSOMEG00000011849	cpsf1	100	77.461	Oryzias_melastigma
ENSGAGG00000004276	CPSF1	98	87.836	ENSOGAG00000000315	CPSF1	100	83.909	Otolemur_garnettii
ENSGAGG00000004276	CPSF1	50	80.952	ENSOARG00000013594	-	89	80.952	Ovis_aries
ENSGAGG00000004276	CPSF1	98	87.500	ENSPPAG00000019280	CPSF1	100	83.748	Pan_paniscus
ENSGAGG00000004276	CPSF1	98	87.500	ENSPTRG00000051253	-	100	82.325	Pan_troglodytes
ENSGAGG00000004276	CPSF1	98	87.500	ENSPTRG00000049288	-	100	83.748	Pan_troglodytes
ENSGAGG00000004276	CPSF1	98	87.500	ENSPANG00000015005	CPSF1	99	83.931	Papio_anubis
ENSGAGG00000004276	CPSF1	98	82.845	ENSPKIG00000002582	cpsf1	100	78.852	Paramormyrops_kingsleyae
ENSGAGG00000004276	CPSF1	98	90.042	ENSPCIG00000009035	CPSF1	100	86.382	Phascolarctos_cinereus
ENSGAGG00000004276	CPSF1	98	80.098	ENSPFOG00000012870	cpsf1	100	76.165	Poecilia_formosa
ENSGAGG00000004276	CPSF1	98	79.870	ENSPREG00000016307	cpsf1	100	76.534	Poecilia_reticulata
ENSGAGG00000004276	CPSF1	100	77.037	ENSPPYG00000018973	CPSF1	100	77.598	Pongo_abelii
ENSGAGG00000004276	CPSF1	91	92.179	ENSPCAG00000011541	CPSF1	94	82.310	Procavia_capensis
ENSGAGG00000004276	CPSF1	98	87.248	ENSPCOG00000020001	CPSF1	100	80.756	Propithecus_coquereli
ENSGAGG00000004276	CPSF1	88	92.473	ENSPVAG00000006761	CPSF1	91	80.685	Pteropus_vampyrus
ENSGAGG00000004276	CPSF1	98	80.791	ENSPNYG00000004906	cpsf1	100	77.391	Pundamilia_nyererei
ENSGAGG00000004276	CPSF1	98	79.800	ENSPNAG00000024395	cpsf1	100	74.586	Pygocentrus_nattereri
ENSGAGG00000004276	CPSF1	98	87.741	ENSRNOG00000030705	Cpsf1	100	84.083	Rattus_norvegicus
ENSGAGG00000004276	CPSF1	98	87.416	ENSRBIG00000044907	CPSF1	99	88.657	Rhinopithecus_bieti
ENSGAGG00000004276	CPSF1	98	87.500	ENSRROG00000044861	CPSF1	99	88.657	Rhinopithecus_roxellana
ENSGAGG00000004276	CPSF1	98	87.248	ENSSBOG00000027177	CPSF1	99	83.788	Saimiri_boliviensis_boliviensis
ENSGAGG00000004276	CPSF1	98	89.707	ENSSHAG00000006500	CPSF1	100	86.107	Sarcophilus_harrisii
ENSGAGG00000004276	CPSF1	98	82.696	ENSSFOG00015004606	cpsf1	100	79.273	Scleropages_formosus
ENSGAGG00000004276	CPSF1	98	79.853	ENSSMAG00000020547	cpsf1	100	76.232	Scophthalmus_maximus
ENSGAGG00000004276	CPSF1	98	81.940	ENSSDUG00000001100	cpsf1	100	78.153	Seriola_dumerili
ENSGAGG00000004276	CPSF1	98	82.176	ENSSLDG00000003619	cpsf1	100	78.138	Seriola_lalandi_dorsalis
ENSGAGG00000004276	CPSF1	91	83.888	ENSSARG00000003643	CPSF1	92	85.417	Sorex_araneus
ENSGAGG00000004276	CPSF1	98	94.221	ENSSPUG00000014396	CPSF1	100	89.009	Sphenodon_punctatus
ENSGAGG00000004276	CPSF1	98	80.603	ENSSPAG00000005349	cpsf1	100	77.395	Stegastes_partitus
ENSGAGG00000004276	CPSF1	98	87.322	ENSSSCG00000005906	CPSF1	100	84.008	Sus_scrofa
ENSGAGG00000004276	CPSF1	98	80.000	ENSTRUG00000013134	cpsf1	99	76.487	Takifugu_rubripes
ENSGAGG00000004276	CPSF1	98	81.442	ENSTNIG00000014027	cpsf1	100	77.276	Tetraodon_nigroviridis
ENSGAGG00000004276	CPSF1	86	85.771	ENSTBEG00000001756	CPSF1	88	85.771	Tupaia_belangeri
ENSGAGG00000004276	CPSF1	86	89.409	ENSTTRG00000001937	CPSF1	90	83.218	Tursiops_truncatus
ENSGAGG00000004276	CPSF1	98	88.161	ENSUAMG00000006476	CPSF1	98	84.516	Ursus_americanus
ENSGAGG00000004276	CPSF1	98	81.506	ENSXCOG00000003608	cpsf1	100	77.188	Xiphophorus_couchianus
ENSGAGG00000004276	CPSF1	98	80.602	ENSXMAG00000005798	cpsf1	100	76.487	Xiphophorus_maculatus