EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000004740 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 6947 bases
Position: chrPPEB01011736.1:25993-32939
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	1	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	2	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	3	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	4	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	5	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	6	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	7	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	8	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	9	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	10	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	11	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	12	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	13	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	14	15
ENSGAGP00000005824	zf-C2H2	PF00096.26	9.4e-81	15	15
ENSGAGP00000005836	zf-C2H2	PF00096.26	1.2e-42	1	7
ENSGAGP00000005836	zf-C2H2	PF00096.26	1.2e-42	2	7
ENSGAGP00000005836	zf-C2H2	PF00096.26	1.2e-42	3	7
ENSGAGP00000005836	zf-C2H2	PF00096.26	1.2e-42	4	7
ENSGAGP00000005836	zf-C2H2	PF00096.26	1.2e-42	5	7
ENSGAGP00000005836	zf-C2H2	PF00096.26	1.2e-42	6	7
ENSGAGP00000005836	zf-C2H2	PF00096.26	1.2e-42	7	7
ENSGAGP00000005839	zf-C2H2	PF00096.26	4.2e-41	1	6
ENSGAGP00000005839	zf-C2H2	PF00096.26	4.2e-41	2	6
ENSGAGP00000005839	zf-C2H2	PF00096.26	4.2e-41	3	6
ENSGAGP00000005839	zf-C2H2	PF00096.26	4.2e-41	4	6
ENSGAGP00000005839	zf-C2H2	PF00096.26	4.2e-41	5	6
ENSGAGP00000005839	zf-C2H2	PF00096.26	4.2e-41	6	6
ENSGAGP00000005829	zf-C2H2	PF00096.26	5.5e-40	1	7
ENSGAGP00000005829	zf-C2H2	PF00096.26	5.5e-40	2	7
ENSGAGP00000005829	zf-C2H2	PF00096.26	5.5e-40	3	7
ENSGAGP00000005829	zf-C2H2	PF00096.26	5.5e-40	4	7
ENSGAGP00000005829	zf-C2H2	PF00096.26	5.5e-40	5	7
ENSGAGP00000005829	zf-C2H2	PF00096.26	5.5e-40	6	7
ENSGAGP00000005829	zf-C2H2	PF00096.26	5.5e-40	7	7
ENSGAGP00000005824	zf-met	PF12874.7	1.8e-17	1	1
ENSGAGP00000005829	zf-met	PF12874.7	3.4e-08	1	1
ENSGAGP00000005839	zf-met	PF12874.7	2e-07	1	1
ENSGAGP00000005836	zf-met	PF12874.7	4.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000006799	-	1086	-	ENSGAGP00000005829	361 (aa)	-	-
ENSGAGT00000006807	-	747	-	ENSGAGP00000005836	248 (aa)	-	-
ENSGAGT00000006812	-	666	-	ENSGAGP00000005839	221 (aa)	-	-
ENSGAGT00000006794	-	1596	-	ENSGAGP00000005824	531 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000004740's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000004740's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000004740	-	96	62.752	ENSGAGG00000002828	-	88	60.287
ENSGAGG00000004740	-	98	67.992	ENSGAGG00000010833	-	92	73.026
ENSGAGG00000004740	-	90	67.416	ENSGAGG00000001645	-	73	60.766
ENSGAGG00000004740	-	86	39.881	ENSGAGG00000020362	PRDM5	80	33.090
ENSGAGG00000004740	-	99	65.054	ENSGAGG00000006323	-	90	65.946
ENSGAGG00000004740	-	91	60.000	ENSGAGG00000017640	-	94	60.000
ENSGAGG00000004740	-	95	61.722	ENSGAGG00000016529	-	91	64.000
ENSGAGG00000004740	-	96	66.667	ENSGAGG00000009272	-	97	67.105
ENSGAGG00000004740	-	91	63.784	ENSGAGG00000020134	-	67	63.784
ENSGAGG00000004740	-	92	67.429	ENSGAGG00000001469	-	100	62.100
ENSGAGG00000004740	-	98	74.054	ENSGAGG00000006683	-	100	69.565
ENSGAGG00000004740	-	84	63.889	ENSGAGG00000005331	-	81	63.889
ENSGAGG00000004740	-	86	44.134	ENSGAGG00000003095	ZNF865	85	52.273
ENSGAGG00000004740	-	96	55.488	ENSGAGG00000006848	-	62	57.237
ENSGAGG00000004740	-	90	47.101	ENSGAGG00000021327	GFI1B	52	47.101
ENSGAGG00000004740	-	92	69.189	ENSGAGG00000007230	-	91	71.747
ENSGAGG00000004740	-	90	45.946	ENSGAGG00000017239	ZBTB14	58	42.143
ENSGAGG00000004740	-	92	55.806	ENSGAGG00000018885	-	81	55.806
ENSGAGG00000004740	-	88	53.459	ENSGAGG00000013021	-	95	53.254
ENSGAGG00000004740	-	92	73.171	ENSGAGG00000008773	-	94	66.822
ENSGAGG00000004740	-	93	53.448	ENSGAGG00000017094	-	50	53.448
ENSGAGG00000004740	-	87	69.189	ENSGAGG00000019349	-	77	70.370
ENSGAGG00000004740	-	96	65.714	ENSGAGG00000002179	-	96	63.761
ENSGAGG00000004740	-	80	51.786	ENSGAGG00000021631	ZNF652	56	37.295
ENSGAGG00000004740	-	81	46.154	ENSGAGG00000003883	ZNF236	68	46.154
ENSGAGG00000004740	-	95	64.234	ENSGAGG00000010324	-	89	64.234
ENSGAGG00000004740	-	92	45.361	ENSGAGG00000022571	ZNF319	93	45.361
ENSGAGG00000004740	-	94	69.375	ENSGAGG00000006960	-	84	74.806
ENSGAGG00000004740	-	87	55.376	ENSGAGG00000004926	-	90	55.556
ENSGAGG00000004740	-	90	58.784	ENSGAGG00000006846	-	97	58.721
ENSGAGG00000004740	-	95	59.908	ENSGAGG00000005805	-	100	59.908
ENSGAGG00000004740	-	86	69.828	ENSGAGG00000015232	-	68	65.248
ENSGAGG00000004740	-	95	70.286	ENSGAGG00000002214	-	93	68.571
ENSGAGG00000004740	-	96	67.797	ENSGAGG00000011487	-	97	63.235
ENSGAGG00000004740	-	96	55.702	ENSGAGG00000018445	-	99	56.452
ENSGAGG00000004740	-	87	70.811	ENSGAGG00000015451	-	90	70.811
ENSGAGG00000004740	-	90	59.091	ENSGAGG00000020168	-	76	59.091
ENSGAGG00000004740	-	95	70.270	ENSGAGG00000014389	-	99	69.767
ENSGAGG00000004740	-	92	72.571	ENSGAGG00000009739	-	99	72.571
ENSGAGG00000004740	-	98	73.125	ENSGAGG00000020594	-	98	70.118
ENSGAGG00000004740	-	89	68.108	ENSGAGG00000000971	-	91	68.108
ENSGAGG00000004740	-	94	74.251	ENSGAGG00000017986	-	97	70.565
ENSGAGG00000004740	-	97	69.486	ENSGAGG00000014356	-	86	69.486
ENSGAGG00000004740	-	90	70.988	ENSGAGG00000010492	-	85	70.988
ENSGAGG00000004740	-	92	58.659	ENSGAGG00000011366	-	97	58.659
ENSGAGG00000004740	-	88	48.485	ENSGAGG00000015899	GFI1	100	48.052
ENSGAGG00000004740	-	98	69.892	ENSGAGG00000011574	-	97	68.254
ENSGAGG00000004740	-	96	62.460	ENSGAGG00000013851	-	92	66.782
ENSGAGG00000004740	-	90	56.647	ENSGAGG00000011399	-	88	56.164
ENSGAGG00000004740	-	98	71.121	ENSGAGG00000012452	-	82	77.027
ENSGAGG00000004740	-	93	55.000	ENSGAGG00000001387	-	71	58.796
ENSGAGG00000004740	-	80	30.337	ENSGAGG00000022082	PRDM15	50	36.170

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000004740	-	90	60.753	ENSAPLG00000012660	-	81	60.753	Anas_platyrhynchos
ENSGAGG00000004740	-	87	61.957	ENSAMXG00000041725	-	93	63.100	Astyanax_mexicanus
ENSGAGG00000004740	-	86	62.745	ENSAMXG00000039752	-	97	62.745	Astyanax_mexicanus
ENSGAGG00000004740	-	80	60.889	ENSAMXG00000004610	-	96	62.733	Astyanax_mexicanus
ENSGAGG00000004740	-	88	59.829	ENSAMXG00000039881	-	50	63.158	Astyanax_mexicanus
ENSGAGG00000004740	-	83	64.539	ENSAMXG00000031489	-	91	70.455	Astyanax_mexicanus
ENSGAGG00000004740	-	90	58.115	ENSAMXG00000001626	-	96	59.922	Astyanax_mexicanus
ENSGAGG00000004740	-	83	59.429	ENSAMXG00000003002	-	98	57.706	Astyanax_mexicanus
ENSGAGG00000004740	-	92	63.043	ENSAMXG00000026142	-	92	63.043	Astyanax_mexicanus
ENSGAGG00000004740	-	86	62.651	ENSAMXG00000026144	-	94	62.651	Astyanax_mexicanus
ENSGAGG00000004740	-	86	61.364	ENSAMXG00000033124	-	63	60.952	Astyanax_mexicanus
ENSGAGG00000004740	-	92	56.489	ENSAMXG00000019489	-	93	60.000	Astyanax_mexicanus
ENSGAGG00000004740	-	90	63.043	ENSAMXG00000025455	-	98	69.271	Astyanax_mexicanus
ENSGAGG00000004740	-	90	58.824	ENSAMXG00000029878	-	94	67.133	Astyanax_mexicanus
ENSGAGG00000004740	-	89	62.712	ENSAMXG00000038453	-	97	60.563	Astyanax_mexicanus
ENSGAGG00000004740	-	91	58.919	ENSAMXG00000043978	-	86	58.919	Astyanax_mexicanus
ENSGAGG00000004740	-	95	62.500	ENSAMXG00000011804	-	94	63.087	Astyanax_mexicanus
ENSGAGG00000004740	-	86	65.584	ENSAMXG00000037703	-	88	65.254	Astyanax_mexicanus
ENSGAGG00000004740	-	94	58.696	ENSAMXG00000032619	-	97	59.722	Astyanax_mexicanus
ENSGAGG00000004740	-	93	56.701	ENSAMXG00000037326	-	98	60.345	Astyanax_mexicanus
ENSGAGG00000004740	-	92	63.816	ENSAMXG00000040212	-	87	59.654	Astyanax_mexicanus
ENSGAGG00000004740	-	87	62.857	ENSAMXG00000035690	-	93	57.009	Astyanax_mexicanus
ENSGAGG00000004740	-	90	59.756	ENSAMXG00000037143	-	94	59.756	Astyanax_mexicanus
ENSGAGG00000004740	-	94	60.000	ENSCPBG00000002014	-	68	58.289	Chrysemys_picta_bellii
ENSGAGG00000004740	-	99	63.725	ENSEASG00005020341	-	94	65.728	Equus_asinus_asinus
ENSGAGG00000004740	-	99	63.725	ENSECAG00000017293	-	95	65.728	Equus_caballus
ENSGAGG00000004740	-	100	65.143	ENSECAG00000039445	-	92	65.143	Equus_caballus
ENSGAGG00000004740	-	97	55.660	ENSIPUG00000015177	-	68	58.000	Ictalurus_punctatus
ENSGAGG00000004740	-	87	68.992	ENSIPUG00000015400	-	95	68.992	Ictalurus_punctatus
ENSGAGG00000004740	-	93	68.493	ENSMPUG00000008437	-	89	63.850	Mustela_putorius_furo
ENSGAGG00000004740	-	95	65.946	ENSPTIG00000009259	-	95	65.946	Panthera_tigris_altaica
ENSGAGG00000004740	-	86	60.251	ENSPSIG00000016247	-	58	63.636	Pelodiscus_sinensis
ENSGAGG00000004740	-	89	64.439	ENSPNAG00000003526	-	87	64.439	Pygocentrus_nattereri
ENSGAGG00000004740	-	96	60.870	ENSPNAG00000024704	-	92	58.794	Pygocentrus_nattereri
ENSGAGG00000004740	-	93	65.341	ENSPNAG00000018437	-	85	64.055	Pygocentrus_nattereri
ENSGAGG00000004740	-	90	56.085	ENSPNAG00000021942	-	98	56.471	Pygocentrus_nattereri
ENSGAGG00000004740	-	95	55.072	ENSPNAG00000000783	-	93	58.099	Pygocentrus_nattereri
ENSGAGG00000004740	-	90	63.291	ENSPNAG00000012138	-	93	63.426	Pygocentrus_nattereri
ENSGAGG00000004740	-	82	62.921	ENSPNAG00000008653	-	99	62.887	Pygocentrus_nattereri
ENSGAGG00000004740	-	96	54.857	ENSPNAG00000029386	-	83	58.065	Pygocentrus_nattereri
ENSGAGG00000004740	-	86	64.000	ENSPNAG00000016025	-	90	64.516	Pygocentrus_nattereri
ENSGAGG00000004740	-	93	58.879	ENSPNAG00000016045	-	79	65.217	Pygocentrus_nattereri
ENSGAGG00000004740	-	98	60.847	ENSPNAG00000017479	-	92	58.527	Pygocentrus_nattereri
ENSGAGG00000004740	-	95	59.846	ENSPNAG00000002287	-	99	64.186	Pygocentrus_nattereri
ENSGAGG00000004740	-	94	60.326	ENSPNAG00000028765	-	86	60.465	Pygocentrus_nattereri
ENSGAGG00000004740	-	95	62.054	ENSPNAG00000007072	-	97	62.054	Pygocentrus_nattereri
ENSGAGG00000004740	-	83	60.870	ENSPNAG00000012366	-	90	58.958	Pygocentrus_nattereri
ENSGAGG00000004740	-	89	59.259	ENSPNAG00000003919	-	98	60.317	Pygocentrus_nattereri
ENSGAGG00000004740	-	86	65.714	ENSPNAG00000018471	-	82	65.287	Pygocentrus_nattereri
ENSGAGG00000004740	-	96	62.963	ENSPNAG00000005914	-	87	62.581	Pygocentrus_nattereri
ENSGAGG00000004740	-	88	59.259	ENSPNAG00000017455	-	85	61.326	Pygocentrus_nattereri
ENSGAGG00000004740	-	88	65.714	ENSUAMG00000027415	-	85	65.714	Ursus_americanus
ENSGAGG00000004740	-	96	63.243	ENSUAMG00000027384	-	87	63.084	Ursus_americanus
ENSGAGG00000004740	-	89	63.243	ENSVPAG00000002698	-	99	63.243	Vicugna_pacos