EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000004921 (Gene tree)
Gene ID: -
Gene Symbol: RAB42
Alias: MGC45806
Full Name: RAB42%2C member RAS oncogene family
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 7995 bases
Position: chrPPEB01003278.1:164621-172615
Accession: 28702
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000006063	MMR_HSR1	PF01926.23	5.8e-05	1	1
ENSGAGP00000006068	MMR_HSR1	PF01926.23	6.1e-05	1	1
ENSGAGP00000006061	MMR_HSR1	PF01926.23	6.2e-05	1	1
ENSGAGP00000006065	MMR_HSR1	PF01926.23	6.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000007067	RAB42-204	630	-	ENSGAGP00000006068	209 (aa)	-	-
ENSGAGT00000007064	RAB42-203	636	-	ENSGAGP00000006065	211 (aa)	-	-
ENSGAGT00000007062	RAB42-202	621	-	ENSGAGP00000006063	206 (aa)	-	-
ENSGAGT00000007060	RAB42-201	633	-	ENSGAGP00000006061	210 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000004921's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000004921's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000004921	RAB42	79	44.172	ENSGAGG00000023956	RAB1B	81	43.636
ENSGAGG00000004921	RAB42	59	35.385	ENSGAGG00000020394	RAB7B	77	35.385
ENSGAGG00000004921	RAB42	89	42.623	ENSGAGG00000023041	RAB2B	85	42.162
ENSGAGG00000004921	RAB42	80	34.146	ENSGAGG00000011790	-	87	34.146
ENSGAGG00000004921	RAB42	77	37.975	ENSGAGG00000012709	RAB23	73	36.000
ENSGAGG00000004921	RAB42	90	43.085	ENSGAGG00000005606	RAB2A	88	43.085
ENSGAGG00000004921	RAB42	99	37.255	ENSGAGG00000020703	RAB25	94	37.864
ENSGAGG00000004921	RAB42	85	38.636	ENSGAGG00000020702	-	81	38.636
ENSGAGG00000004921	RAB42	97	52.709	ENSGAGG00000004918	-	100	52.709
ENSGAGG00000004921	RAB42	80	45.665	ENSGAGG00000000742	-	84	45.665
ENSGAGG00000004921	RAB42	78	41.317	ENSGAGG00000017981	RAB9A	82	41.317
ENSGAGG00000004921	RAB42	80	32.927	ENSGAGG00000019886	-	85	32.927
ENSGAGG00000004921	RAB42	65	32.090	ENSGAGG00000024365	ARL3	75	32.090
ENSGAGG00000004921	RAB42	75	32.051	ENSGAGG00000020094	MRAS	82	32.164
ENSGAGG00000004921	RAB42	79	44.785	ENSGAGG00000006802	RAB1A	80	44.242
ENSGAGG00000004921	RAB42	91	34.225	ENSGAGG00000011057	KRAS	97	34.225
ENSGAGG00000004921	RAB42	82	44.048	ENSGAGG00000017207	RAB35	96	41.414
ENSGAGG00000004921	RAB42	76	43.312	ENSGAGG00000013139	RAB19	71	42.767
ENSGAGG00000004921	RAB42	80	39.024	ENSGAGG00000022371	-	78	39.024
ENSGAGG00000004921	RAB42	73	30.573	ENSGAGG00000015067	RASL11A	65	30.769
ENSGAGG00000004921	RAB42	72	31.788	ENSGAGG00000021838	RERG	74	31.788
ENSGAGG00000004921	RAB42	87	34.574	ENSGAGG00000009488	RAB33A	83	34.574
ENSGAGG00000004921	RAB42	78	37.725	ENSGAGG00000012234	RAB7A	80	37.725
ENSGAGG00000004921	RAB42	89	52.459	ENSGAGG00000008447	RAB39B	86	52.459
ENSGAGG00000004921	RAB42	79	33.129	ENSGAGG00000025053	RRAS2	84	32.948
ENSGAGG00000004921	RAB42	77	41.566	ENSGAGG00000012314	RAB9B	82	41.566
ENSGAGG00000004921	RAB42	76	40.764	ENSGAGG00000021701	RAB6A	75	40.764
ENSGAGG00000004921	RAB42	80	32.317	ENSGAGG00000017673	NRAS	94	31.667
ENSGAGG00000004921	RAB42	98	37.681	ENSGAGG00000014814	RAB11A	94	37.321
ENSGAGG00000004921	RAB42	99	37.198	ENSGAGG00000012557	-	94	36.842
ENSGAGG00000004921	RAB42	84	41.954	ENSGAGG00000004474	RAB30	86	42.045
ENSGAGG00000004921	RAB42	99	36.408	ENSGAGG00000002936	RAB33B	89	36.019
ENSGAGG00000004921	RAB42	80	32.934	ENSGAGG00000012473	RAB34	71	32.934
ENSGAGG00000004921	RAB42	80	39.394	ENSGAGG00000015642	-	79	39.394
ENSGAGG00000004921	RAB42	76	36.943	ENSGAGG00000005319	RAB5A	73	37.342
ENSGAGG00000004921	RAB42	82	39.053	ENSGAGG00000007278	RAB12	71	39.106
ENSGAGG00000004921	RAB42	99	41.905	ENSGAGG00000004988	RAB14	96	41.509
ENSGAGG00000004921	RAB42	80	33.537	ENSGAGG00000018569	RAB22A	86	32.738
ENSGAGG00000004921	RAB42	85	30.899	ENSGAGG00000025340	RAB36	67	30.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000004921	RAB42	99	59.135	ENSANAG00000035487	-	98	59.434	Aotus_nancymaae
ENSGAGG00000004921	RAB42	99	61.321	ENSBTAG00000021525	-	98	61.574	Bos_taurus
ENSGAGG00000004921	RAB42	100	96.117	ENSCPBG00000011245	RAB42	99	97.059	Chrysemys_picta_bellii
ENSGAGG00000004921	RAB42	100	61.215	ENSCGRG00001019426	Rab42	98	62.441	Cricetulus_griseus_chok1gshd
ENSGAGG00000004921	RAB42	100	58.411	ENSDORG00000023607	Rab42	99	58.411	Dipodomys_ordii
ENSGAGG00000004921	RAB42	99	60.952	ENSFCAG00000037124	-	97	60.664	Felis_catus
ENSGAGG00000004921	RAB42	99	59.809	ENSSTOG00000000084	-	98	60.094	Ictidomys_tridecemlineatus
ENSGAGG00000004921	RAB42	100	60.930	ENSMAUG00000020223	Rab42	99	60.930	Mesocricetus_auratus
ENSGAGG00000004921	RAB42	99	60.476	ENSMICG00000029915	-	98	61.682	Microcebus_murinus
ENSGAGG00000004921	RAB42	100	61.682	ENSMOCG00000021639	Rab42	99	61.682	Microtus_ochrogaster
ENSGAGG00000004921	RAB42	100	57.547	ENSMODG00000023873	-	97	57.547	Monodelphis_domestica
ENSGAGG00000004921	RAB42	100	60.648	ENSNGAG00000015676	Rab42	99	60.648	Nannospalax_galili
ENSGAGG00000004921	RAB42	99	60.476	ENSOGAG00000006951	-	98	60.280	Otolemur_garnettii
ENSGAGG00000004921	RAB42	99	94.146	ENSPSIG00000006831	RAB42	92	94.146	Pelodiscus_sinensis
ENSGAGG00000004921	RAB42	99	59.048	ENSPCOG00000008605	-	98	60.748	Propithecus_coquereli
ENSGAGG00000004921	RAB42	99	60.680	ENSSARG00000007565	-	100	60.680	Sorex_araneus
ENSGAGG00000004921	RAB42	100	85.990	ENSSPUG00000010337	RAB42	98	85.714	Sphenodon_punctatus
ENSGAGG00000004921	RAB42	99	58.962	ENSSSCG00000030432	-	97	58.879	Sus_scrofa