EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000004947 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 5763 bases
Position: chrPPEB01011801.1:20731-26493
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000006115	APOBEC_N	PF08210.11	1.9e-22	1	1
ENSGAGP00000006109	APOBEC_N	PF08210.11	7.9e-20	1	1
ENSGAGP00000006121	APOBEC_N	PF08210.11	2.6e-18	1	1
ENSGAGP00000006115	APOBEC_C	PF05240.14	4.6e-13	1	1
ENSGAGP00000006109	APOBEC_C	PF05240.14	7.3e-08	1	1
ENSGAGP00000006121	APOBEC_C	PF05240.14	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000007115	-	486	-	ENSGAGP00000006109	161 (aa)	-	-
ENSGAGT00000007129	-	471	-	ENSGAGP00000006121	156 (aa)	-	-
ENSGAGT00000007121	-	606	-	ENSGAGP00000006115	201 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000004947's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000004947's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000004947	-	87	53.143	ENSGAGG00000006624	-	63	53.143
ENSGAGG00000004947	-	72	33.333	ENSGAGG00000011839	-	64	36.434
ENSGAGG00000004947	-	72	33.333	ENSGAGG00000011838	-	64	36.434
ENSGAGG00000004947	-	85	56.069	ENSGAGG00000011837	-	87	57.059
ENSGAGG00000004947	-	82	49.697	ENSGAGG00000021744	-	64	49.697
ENSGAGG00000004947	-	84	49.419	ENSGAGG00000021745	-	63	49.419

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000004947	-	83	53.383	ENSG00000111701	APOBEC1	68	51.852	Homo_sapiens
ENSGAGG00000004947	-	75	55.556	ENSAMEG00000007098	APOBEC1	68	49.689	Ailuropoda_melanoleuca
ENSGAGG00000004947	-	81	44.785	ENSACAG00000028578	-	88	44.785	Anolis_carolinensis
ENSGAGG00000004947	-	76	58.197	ENSANAG00000027743	APOBEC1	65	53.086	Aotus_nancymaae
ENSGAGG00000004947	-	88	42.162	ENSBTAG00000014683	APOBEC1	78	42.162	Bos_taurus
ENSGAGG00000004947	-	85	51.701	ENSCJAG00000005398	APOBEC1	72	53.086	Callithrix_jacchus
ENSGAGG00000004947	-	82	51.515	ENSCAFG00000013901	APOBEC1	68	49.383	Canis_familiaris
ENSGAGG00000004947	-	86	50.746	ENSCAFG00020003511	APOBEC1	74	46.369	Canis_lupus_dingo
ENSGAGG00000004947	-	82	47.287	ENSCHIG00000011898	APOBEC1	74	45.087	Capra_hircus
ENSGAGG00000004947	-	76	58.475	ENSTSYG00000029141	APOBEC1	84	58.333	Carlito_syrichta
ENSGAGG00000004947	-	83	46.617	ENSCAPG00000015882	-	74	46.296	Cavia_aperea
ENSGAGG00000004947	-	83	45.522	ENSCPOG00000033068	APOBEC1	68	45.679	Cavia_porcellus
ENSGAGG00000004947	-	80	53.704	ENSCCAG00000022258	APOBEC1	68	53.704	Cebus_capucinus
ENSGAGG00000004947	-	76	56.557	ENSCATG00000021613	APOBEC1	65	51.852	Cercocebus_atys
ENSGAGG00000004947	-	80	46.914	ENSCLAG00000014645	APOBEC1	70	46.914	Chinchilla_lanigera
ENSGAGG00000004947	-	70	50.000	ENSCSAG00000009817	APOBEC1	73	50.000	Chlorocebus_sabaeus
ENSGAGG00000004947	-	82	51.807	ENSCPBG00000014327	-	62	51.807	Chrysemys_picta_bellii
ENSGAGG00000004947	-	84	53.631	ENSCPBG00000014328	-	78	53.631	Chrysemys_picta_bellii
ENSGAGG00000004947	-	90	51.366	ENSCPBG00000014331	-	75	51.366	Chrysemys_picta_bellii
ENSGAGG00000004947	-	93	52.660	ENSCPBG00000014335	-	76	52.660	Chrysemys_picta_bellii
ENSGAGG00000004947	-	85	51.744	ENSCPBG00000017398	-	75	51.744	Chrysemys_picta_bellii
ENSGAGG00000004947	-	83	53.383	ENSCANG00000038359	APOBEC1	70	51.235	Colobus_angolensis_palliatus
ENSGAGG00000004947	-	86	47.977	ENSCGRG00001011130	Apobec1	75	47.977	Cricetulus_griseus_chok1gshd
ENSGAGG00000004947	-	86	47.977	ENSCGRG00000008644	Apobec1	75	47.977	Cricetulus_griseus_crigri
ENSGAGG00000004947	-	75	57.265	ENSDNOG00000010926	APOBEC1	68	50.617	Dasypus_novemcinctus
ENSGAGG00000004947	-	76	47.458	ENSDORG00000023717	Apobec1	75	42.593	Dipodomys_ordii
ENSGAGG00000004947	-	80	48.466	ENSETEG00000004867	APOBEC1	68	48.466	Echinops_telfairi
ENSGAGG00000004947	-	76	54.918	ENSEASG00005015951	APOBEC1	67	50.000	Equus_asinus_asinus
ENSGAGG00000004947	-	70	49.296	ENSECAG00000017163	APOBEC1	73	49.296	Equus_caballus
ENSGAGG00000004947	-	84	51.111	ENSEEUG00000009112	-	77	46.286	Erinaceus_europaeus
ENSGAGG00000004947	-	83	50.388	ENSEEUG00000007530	-	61	51.538	Erinaceus_europaeus
ENSGAGG00000004947	-	82	53.906	ENSFCAG00000009350	APOBEC1	72	48.555	Felis_catus
ENSGAGG00000004947	-	87	55.147	ENSFALG00000007257	-	79	55.147	Ficedula_albicollis
ENSGAGG00000004947	-	79	41.875	ENSFDAG00000018470	APOBEC1	76	41.875	Fukomys_damarensis
ENSGAGG00000004947	-	80	42.593	ENSHGLG00000001495	APOBEC1	68	42.593	Heterocephalus_glaber_female
ENSGAGG00000004947	-	80	42.593	ENSHGLG00100002187	APOBEC1	68	42.593	Heterocephalus_glaber_male
ENSGAGG00000004947	-	75	54.701	ENSSTOG00000021971	APOBEC1	99	52.041	Ictidomys_tridecemlineatus
ENSGAGG00000004947	-	75	52.991	ENSJJAG00000022108	Apobec1	69	47.826	Jaculus_jaculus
ENSGAGG00000004947	-	78	53.600	ENSLAFG00000030837	APOBEC1	72	49.383	Loxodonta_africana
ENSGAGG00000004947	-	83	53.383	ENSMFAG00000000277	APOBEC1	73	50.704	Macaca_fascicularis
ENSGAGG00000004947	-	83	53.383	ENSMNEG00000029670	APOBEC1	68	52.469	Macaca_nemestrina
ENSGAGG00000004947	-	76	56.557	ENSMLEG00000036301	APOBEC1	68	51.852	Mandrillus_leucophaeus
ENSGAGG00000004947	-	87	48.148	ENSMAUG00000022167	Apobec1	78	45.810	Mesocricetus_auratus
ENSGAGG00000004947	-	85	50.365	ENSMICG00000043645	APOBEC1	76	45.198	Microcebus_murinus
ENSGAGG00000004947	-	63	51.020	ENSMOCG00000016170	-	86	51.020	Microtus_ochrogaster
ENSGAGG00000004947	-	80	51.852	ENSMODG00000018004	APOBEC1	68	51.852	Monodelphis_domestica
ENSGAGG00000004947	-	86	47.399	ENSMUSG00000040613	Apobec1	86	52.041	Mus_musculus
ENSGAGG00000004947	-	94	46.316	MGP_PahariEiJ_G0022580	-	88	51.402	Mus_pahari
ENSGAGG00000004947	-	86	47.399	MGP_SPRETEiJ_G0029857	Apobec1	86	52.041	Mus_spretus
ENSGAGG00000004947	-	80	51.200	ENSMPUG00000017532	APOBEC1	68	47.531	Mustela_putorius_furo
ENSGAGG00000004947	-	90	45.856	ENSNGAG00000022607	Apobec1	76	45.856	Nannospalax_galili
ENSGAGG00000004947	-	76	54.918	ENSNLEG00000005342	APOBEC1	68	50.617	Nomascus_leucogenys
ENSGAGG00000004947	-	80	48.148	ENSMEUG00000013406	APOBEC1	68	48.148	Notamacropus_eugenii
ENSGAGG00000004947	-	76	56.303	ENSOPRG00000009508	-	88	50.000	Ochotona_princeps
ENSGAGG00000004947	-	63	47.959	ENSODEG00000001157	-	99	47.959	Octodon_degus
ENSGAGG00000004947	-	76	56.557	ENSOCUG00000025736	APOBEC1	60	50.000	Oryctolagus_cuniculus
ENSGAGG00000004947	-	76	54.098	ENSOGAG00000026415	APOBEC1	68	48.765	Otolemur_garnettii
ENSGAGG00000004947	-	82	46.821	ENSOARG00000002072	APOBEC1	72	46.821	Ovis_aries
ENSGAGG00000004947	-	83	48.120	ENSPPAG00000027657	APOBEC1	65	47.531	Pan_paniscus
ENSGAGG00000004947	-	82	53.125	ENSPPRG00000012182	APOBEC1	72	47.977	Panthera_pardus
ENSGAGG00000004947	-	82	53.125	ENSPTIG00000020280	APOBEC1	72	47.977	Panthera_tigris_altaica
ENSGAGG00000004947	-	83	53.383	ENSPTRG00000004614	APOBEC1	68	51.852	Pan_troglodytes
ENSGAGG00000004947	-	83	53.383	ENSPANG00000021027	APOBEC1	68	51.852	Papio_anubis
ENSGAGG00000004947	-	92	51.075	ENSPSIG00000012568	-	80	51.075	Pelodiscus_sinensis
ENSGAGG00000004947	-	65	76.000	ENSPSIG00000012791	-	69	76.000	Pelodiscus_sinensis
ENSGAGG00000004947	-	86	45.665	ENSPEMG00000023841	Apobec1	75	45.665	Peromyscus_maniculatus_bairdii
ENSGAGG00000004947	-	85	51.064	ENSPCIG00000023973	APOBEC1	68	51.852	Phascolarctos_cinereus
ENSGAGG00000004947	-	83	53.383	ENSPPYG00000004228	APOBEC1	65	51.852	Pongo_abelii
ENSGAGG00000004947	-	80	50.000	ENSPCAG00000008733	APOBEC1	86	50.000	Procavia_capensis
ENSGAGG00000004947	-	83	50.746	ENSPCOG00000013957	APOBEC1	71	48.148	Propithecus_coquereli
ENSGAGG00000004947	-	76	53.279	ENSPVAG00000010709	APOBEC1	52	53.279	Pteropus_vampyrus
ENSGAGG00000004947	-	86	45.087	ENSRNOG00000015411	Apobec1	75	45.087	Rattus_norvegicus
ENSGAGG00000004947	-	83	52.632	ENSRBIG00000031161	APOBEC1	68	50.617	Rhinopithecus_bieti
ENSGAGG00000004947	-	83	52.632	ENSRROG00000033576	APOBEC1	72	49.286	Rhinopithecus_roxellana
ENSGAGG00000004947	-	76	56.557	ENSSBOG00000030587	APOBEC1	90	52.469	Saimiri_boliviensis_boliviensis
ENSGAGG00000004947	-	80	51.852	ENSSHAG00000008925	APOBEC1	70	51.852	Sarcophilus_harrisii
ENSGAGG00000004947	-	81	53.543	ENSSARG00000000032	-	99	46.821	Sorex_araneus
ENSGAGG00000004947	-	83	50.388	ENSSARG00000011972	-	98	50.769	Sorex_araneus
ENSGAGG00000004947	-	86	43.262	ENSSPUG00000009044	-	67	43.103	Sphenodon_punctatus
ENSGAGG00000004947	-	75	54.701	ENSSSCG00000000668	APOBEC1	68	49.383	Sus_scrofa
ENSGAGG00000004947	-	81	54.762	ENSTGUG00000013118	-	96	53.521	Taeniopygia_guttata
ENSGAGG00000004947	-	81	50.769	ENSTBEG00000010043	APOBEC1	68	47.531	Tupaia_belangeri
ENSGAGG00000004947	-	75	54.701	ENSTTRG00000014015	APOBEC1	86	48.765	Tursiops_truncatus
ENSGAGG00000004947	-	75	53.846	ENSUAMG00000011636	APOBEC1	66	48.765	Ursus_americanus
ENSGAGG00000004947	-	75	53.846	ENSUMAG00000016552	APOBEC1	66	48.765	Ursus_maritimus
ENSGAGG00000004947	-	80	47.826	ENSVPAG00000001343	APOBEC1	67	47.826	Vicugna_pacos
ENSGAGG00000004947	-	82	52.273	ENSVVUG00000010522	APOBEC1	68	50.000	Vulpes_vulpes