EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000004984 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 53949 bases
Position: chrPPEB01002668.1:178452-232400
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000008437	RNA_pol_Rpb1_5	PF04998.17	3.2e-101	1	1
ENSGAGP00000008089	RNA_pol_Rpb1_5	PF04998.17	4.3e-101	1	1
ENSGAGP00000008396	RNA_pol_Rpb1_5	PF04998.17	4.5e-101	1	1
ENSGAGP00000008399	RNA_pol_Rpb1_5	PF04998.17	4.5e-101	1	1
ENSGAGP00000008383	RNA_pol_Rpb1_5	PF04998.17	4.5e-101	1	1
ENSGAGP00000008448	RNA_pol_Rpb1_4	PF05000.17	1.4e-24	1	1
ENSGAGP00000008089	RNA_pol_Rpb1_4	PF05000.17	2e-24	1	1
ENSGAGP00000008437	RNA_pol_Rpb1_4	PF05000.17	2.1e-24	1	1
ENSGAGP00000008396	RNA_pol_Rpb1_4	PF05000.17	2.1e-24	1	1
ENSGAGP00000008399	RNA_pol_Rpb1_4	PF05000.17	2.1e-24	1	1
ENSGAGP00000008383	RNA_pol_Rpb1_4	PF05000.17	2.1e-24	1	1
ENSGAGP00000008448	RNA_pol_Rpb1_2	PF00623.20	3.7e-71	1	1
ENSGAGP00000008437	RNA_pol_Rpb1_2	PF00623.20	4.5e-71	1	1
ENSGAGP00000008089	RNA_pol_Rpb1_2	PF00623.20	4.8e-71	1	1
ENSGAGP00000008383	RNA_pol_Rpb1_2	PF00623.20	4.9e-71	1	1
ENSGAGP00000008396	RNA_pol_Rpb1_2	PF00623.20	4.9e-71	1	1
ENSGAGP00000008399	RNA_pol_Rpb1_2	PF00623.20	4.9e-71	1	1
ENSGAGP00000008396	RNA_pol_Rpb1_3	PF04983.18	7.6e-37	1	1
ENSGAGP00000008399	RNA_pol_Rpb1_3	PF04983.18	7.6e-37	1	1
ENSGAGP00000008383	RNA_pol_Rpb1_3	PF04983.18	7.6e-37	1	1
ENSGAGP00000008437	RNA_pol_Rpb1_3	PF04983.18	7.7e-37	1	1
ENSGAGP00000008089	RNA_pol_Rpb1_3	PF04983.18	8.4e-37	1	1
ENSGAGP00000008448	RNA_pol_Rpb1_3	PF04983.18	8.9e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000009317	-	4587	-	ENSGAGP00000008089	1528 (aa)	-	-
ENSGAGT00000009671	-	4593	-	ENSGAGP00000008399	1530 (aa)	-	-
ENSGAGT00000009724	-	2448	-	ENSGAGP00000008448	815 (aa)	-	-
ENSGAGT00000009652	-	4602	-	ENSGAGP00000008383	1533 (aa)	-	-
ENSGAGT00000009668	-	4596	-	ENSGAGP00000008396	1531 (aa)	-	-
ENSGAGT00000009713	-	4464	-	ENSGAGP00000008437	1487 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000004984's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000004984's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000004984	-	56	59.701	ENSGAGG00000010386	POLR3A	60	59.701

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000004984	-	96	81.163	ENSG00000068654	POLR1A	89	75.442	Homo_sapiens
ENSGAGG00000004984	-	96	72.519	ENSAPOG00000017945	polr1a	94	72.126	Acanthochromis_polyacanthus
ENSGAGG00000004984	-	96	82.174	ENSAMEG00000005807	POLR1A	89	76.234	Ailuropoda_melanoleuca
ENSGAGG00000004984	-	94	69.258	ENSACIG00000022147	polr1a	88	69.784	Amphilophus_citrinellus
ENSGAGG00000004984	-	96	71.883	ENSAOCG00000017336	polr1a	88	69.844	Amphiprion_ocellaris
ENSGAGG00000004984	-	96	72.010	ENSAPEG00000016105	polr1a	89	68.483	Amphiprion_percula
ENSGAGG00000004984	-	95	73.171	ENSATEG00000016773	polr1a	89	67.911	Anabas_testudineus
ENSGAGG00000004984	-	95	81.305	ENSAPLG00000013871	POLR1A	100	81.305	Anas_platyrhynchos
ENSGAGG00000004984	-	95	80.382	ENSACAG00000012141	POLR1A	90	75.736	Anolis_carolinensis
ENSGAGG00000004984	-	96	80.657	ENSANAG00000033927	POLR1A	89	74.855	Aotus_nancymaae
ENSGAGG00000004984	-	99	64.136	ENSACLG00000020541	polr1a	91	64.032	Astatotilapia_calliptera
ENSGAGG00000004984	-	95	81.934	ENSBTAG00000006481	POLR1A	90	75.097	Bos_taurus
ENSGAGG00000004984	-	99	38.861	WBGene00012999	rpoa-1	77	60.870	Caenorhabditis_elegans
ENSGAGG00000004984	-	96	80.405	ENSCJAG00000019547	POLR1A	89	74.790	Callithrix_jacchus
ENSGAGG00000004984	-	95	82.188	ENSCAFG00000007613	POLR1A	89	76.558	Canis_familiaris
ENSGAGG00000004984	-	96	81.589	ENSCAFG00020014752	POLR1A	90	75.887	Canis_lupus_dingo
ENSGAGG00000004984	-	96	81.795	ENSCHIG00000018204	POLR1A	89	75.049	Capra_hircus
ENSGAGG00000004984	-	96	79.950	ENSTSYG00000002761	POLR1A	89	74.225	Carlito_syrichta
ENSGAGG00000004984	-	95	79.416	ENSCAPG00000010132	POLR1A	92	71.822	Cavia_aperea
ENSGAGG00000004984	-	95	80.637	ENSCPOG00000012350	POLR1A	89	75.277	Cavia_porcellus
ENSGAGG00000004984	-	96	80.405	ENSCCAG00000019839	POLR1A	89	74.984	Cebus_capucinus
ENSGAGG00000004984	-	96	80.531	ENSCATG00000029786	POLR1A	89	74.984	Cercocebus_atys
ENSGAGG00000004984	-	95	80.482	ENSCLAG00000005187	POLR1A	89	74.432	Chinchilla_lanigera
ENSGAGG00000004984	-	96	80.405	ENSCSAG00000016251	POLR1A	89	75.130	Chlorocebus_sabaeus
ENSGAGG00000004984	-	76	84.500	ENSCHOG00000003766	-	66	85.294	Choloepus_hoffmanni
ENSGAGG00000004984	-	99	97.438	ENSCPBG00000001115	POLR1A	89	97.448	Chrysemys_picta_bellii
ENSGAGG00000004984	-	99	46.930	ENSCSAVG00000007184	-	90	46.431	Ciona_savignyi
ENSGAGG00000004984	-	99	72.280	ENSCANG00000031785	POLR1A	89	72.409	Colobus_angolensis_palliatus
ENSGAGG00000004984	-	99	70.059	ENSCGRG00001006651	Polr1a	89	70.059	Cricetulus_griseus_chok1gshd
ENSGAGG00000004984	-	67	73.171	ENSCGRG00000010834	Polr1a	99	73.171	Cricetulus_griseus_crigri
ENSGAGG00000004984	-	99	65.079	ENSCSEG00000020190	polr1a	89	64.815	Cynoglossus_semilaevis
ENSGAGG00000004984	-	94	73.057	ENSCVAG00000020941	polr1a	89	66.798	Cyprinodon_variegatus
ENSGAGG00000004984	-	95	72.866	ENSDARG00000098375	polr1a	89	68.442	Danio_rerio
ENSGAGG00000004984	-	94	79.253	ENSDNOG00000010829	POLR1A	89	71.298	Dasypus_novemcinctus
ENSGAGG00000004984	-	96	78.947	ENSDORG00000008298	Polr1a	89	75.537	Dipodomys_ordii
ENSGAGG00000004984	-	96	47.541	FBgn0019938	RpI1	88	45.641	Drosophila_melanogaster
ENSGAGG00000004984	-	68	90.323	ENSETEG00000000412	-	61	90.323	Echinops_telfairi
ENSGAGG00000004984	-	91	65.385	ENSEBUG00000005667	-	99	48.170	Eptatretus_burgeri
ENSGAGG00000004984	-	96	81.669	ENSEASG00005001625	POLR1A	89	75.693	Equus_asinus_asinus
ENSGAGG00000004984	-	96	81.542	ENSECAG00000010092	POLR1A	89	81.969	Equus_caballus
ENSGAGG00000004984	-	96	81.542	ENSECAG00000030510	-	89	81.969	Equus_caballus
ENSGAGG00000004984	-	96	81.542	ENSECAG00000036306	-	89	81.969	Equus_caballus
ENSGAGG00000004984	-	84	87.302	ENSEEUG00000000676	POLR1A	75	87.302	Erinaceus_europaeus
ENSGAGG00000004984	-	95	73.563	ENSELUG00000012769	polr1a	88	68.877	Esox_lucius
ENSGAGG00000004984	-	96	81.542	ENSFCAG00000008966	POLR1A	89	76.055	Felis_catus
ENSGAGG00000004984	-	96	84.351	ENSFALG00000010082	POLR1A	90	79.804	Ficedula_albicollis
ENSGAGG00000004984	-	95	80.789	ENSFDAG00000013726	POLR1A	89	75.228	Fukomys_damarensis
ENSGAGG00000004984	-	99	64.970	ENSFHEG00000005996	polr1a	89	65.379	Fundulus_heteroclitus
ENSGAGG00000004984	-	99	62.467	ENSGMOG00000002230	polr1a	91	62.213	Gadus_morhua
ENSGAGG00000004984	-	96	84.111	ENSGALG00000038160	-	88	78.587	Gallus_gallus
ENSGAGG00000004984	-	99	67.015	ENSGAFG00000015266	polr1a	90	67.439	Gambusia_affinis
ENSGAGG00000004984	-	95	71.338	ENSGACG00000018791	polr1a	89	65.589	Gasterosteus_aculeatus
ENSGAGG00000004984	-	96	81.163	ENSGGOG00000001788	POLR1A	89	75.324	Gorilla_gorilla
ENSGAGG00000004984	-	84	76.197	ENSHBUG00000020021	polr1a	85	71.604	Haplochromis_burtoni
ENSGAGG00000004984	-	95	81.599	ENSHGLG00000006334	POLR1A	89	75.583	Heterocephalus_glaber_female
ENSGAGG00000004984	-	95	81.084	ENSHGLG00100006614	POLR1A	89	75.339	Heterocephalus_glaber_male
ENSGAGG00000004984	-	99	64.656	ENSHCOG00000003345	polr1a	91	64.314	Hippocampus_comes
ENSGAGG00000004984	-	99	70.118	ENSIPUG00000013174	polr1a	89	69.836	Ictalurus_punctatus
ENSGAGG00000004984	-	96	82.084	ENSSTOG00000012580	POLR1A	89	75.506	Ictidomys_tridecemlineatus
ENSGAGG00000004984	-	96	81.864	ENSJJAG00000013113	Polr1a	89	75.408	Jaculus_jaculus
ENSGAGG00000004984	-	99	68.095	ENSKMAG00000007399	polr1a	89	67.543	Kryptolebias_marmoratus
ENSGAGG00000004984	-	92	69.809	ENSLBEG00000015401	polr1a	87	69.915	Labrus_bergylta
ENSGAGG00000004984	-	89	80.135	ENSLACG00000003218	polr1a	81	80.135	Latimeria_chalumnae
ENSGAGG00000004984	-	95	78.046	ENSLOCG00000010881	polr1a	90	73.420	Lepisosteus_oculatus
ENSGAGG00000004984	-	95	81.061	ENSLAFG00000014948	POLR1A	90	75.599	Loxodonta_africana
ENSGAGG00000004984	-	96	80.405	ENSMFAG00000046097	POLR1A	89	74.919	Macaca_fascicularis
ENSGAGG00000004984	-	96	80.531	ENSMMUG00000015815	POLR1A	89	74.919	Macaca_mulatta
ENSGAGG00000004984	-	96	80.405	ENSMNEG00000043313	POLR1A	89	74.919	Macaca_nemestrina
ENSGAGG00000004984	-	96	80.405	ENSMLEG00000042428	POLR1A	89	74.337	Mandrillus_leucophaeus
ENSGAGG00000004984	-	95	73.454	ENSMAMG00000016565	polr1a	89	69.226	Mastacembelus_armatus
ENSGAGG00000004984	-	95	72.215	ENSMZEG00005004915	polr1a	89	67.874	Maylandia_zebra
ENSGAGG00000004984	-	96	83.459	ENSMGAG00000013111	POLR1A	89	77.344	Meleagris_gallopavo
ENSGAGG00000004984	-	96	80.678	ENSMAUG00000008497	Polr1a	98	75.519	Mesocricetus_auratus
ENSGAGG00000004984	-	96	80.784	ENSMICG00000000757	POLR1A	89	75.469	Microcebus_murinus
ENSGAGG00000004984	-	96	80.552	ENSMOCG00000000122	Polr1a	89	75.538	Microtus_ochrogaster
ENSGAGG00000004984	-	95	72.165	ENSMMOG00000010216	polr1a	89	67.041	Mola_mola
ENSGAGG00000004984	-	95	79.975	ENSMODG00000009335	POLR1A	90	70.777	Monodelphis_domestica
ENSGAGG00000004984	-	95	73.290	ENSMALG00000013363	polr1a	95	67.911	Monopterus_albus
ENSGAGG00000004984	-	95	79.798	MGP_CAROLIEiJ_G0028494	Polr1a	99	68.139	Mus_caroli
ENSGAGG00000004984	-	96	80.176	ENSMUSG00000049553	Polr1a	99	68.407	Mus_musculus
ENSGAGG00000004984	-	96	80.402	MGP_PahariEiJ_G0022230	Polr1a	99	68.365	Mus_pahari
ENSGAGG00000004984	-	96	80.176	MGP_SPRETEiJ_G0029499	Polr1a	99	69.717	Mus_spretus
ENSGAGG00000004984	-	96	82.301	ENSMPUG00000009135	POLR1A	89	76.410	Mustela_putorius_furo
ENSGAGG00000004984	-	96	81.477	ENSMLUG00000015723	POLR1A	90	75.355	Myotis_lucifugus
ENSGAGG00000004984	-	96	80.176	ENSNGAG00000017907	Polr1a	89	75.082	Nannospalax_galili
ENSGAGG00000004984	-	95	72.087	ENSNBRG00000000519	polr1a	89	67.874	Neolamprologus_brichardi
ENSGAGG00000004984	-	96	79.772	ENSNLEG00000002264	POLR1A	89	73.260	Nomascus_leucogenys
ENSGAGG00000004984	-	74	94.444	ENSMEUG00000011665	-	65	94.444	Notamacropus_eugenii
ENSGAGG00000004984	-	96	79.393	ENSOPRG00000008269	POLR1A	89	72.402	Ochotona_princeps
ENSGAGG00000004984	-	95	80.534	ENSODEG00000003542	POLR1A	89	74.967	Octodon_degus
ENSGAGG00000004984	-	99	67.913	ENSONIG00000015895	polr1a	89	68.087	Oreochromis_niloticus
ENSGAGG00000004984	-	69	68.359	ENSOANG00000012384	-	80	69.454	Ornithorhynchus_anatinus
ENSGAGG00000004984	-	96	81.795	ENSOCUG00000010138	POLR1A	89	76.743	Oryctolagus_cuniculus
ENSGAGG00000004984	-	95	71.959	ENSORLG00000008753	polr1a	89	67.390	Oryzias_latipes
ENSGAGG00000004984	-	95	70.205	ENSORLG00020020726	polr1a	90	65.420	Oryzias_latipes_hni
ENSGAGG00000004984	-	99	64.902	ENSORLG00015016071	polr1a	93	64.997	Oryzias_latipes_hsok
ENSGAGG00000004984	-	96	80.580	ENSOGAG00000004031	POLR1A	89	75.777	Otolemur_garnettii
ENSGAGG00000004984	-	96	81.337	ENSOARG00000020601	POLR1A	90	75.097	Ovis_aries
ENSGAGG00000004984	-	96	81.416	ENSPPAG00000042450	POLR1A	89	75.194	Pan_paniscus
ENSGAGG00000004984	-	96	81.416	ENSPPRG00000006702	POLR1A	89	75.990	Panthera_pardus
ENSGAGG00000004984	-	96	80.427	ENSPTIG00000018783	POLR1A	90	75.469	Panthera_tigris_altaica
ENSGAGG00000004984	-	96	81.163	ENSPTRG00000012147	POLR1A	89	75.521	Pan_troglodytes
ENSGAGG00000004984	-	96	80.278	ENSPANG00000025908	POLR1A	89	74.725	Papio_anubis
ENSGAGG00000004984	-	95	74.936	ENSPKIG00000005468	polr1a	90	69.127	Paramormyrops_kingsleyae
ENSGAGG00000004984	-	70	91.713	ENSPSIG00000009321	-	100	91.713	Pelodiscus_sinensis
ENSGAGG00000004984	-	95	71.245	ENSPMGG00000009718	polr1a	81	72.490	Periophthalmus_magnuspinnatus
ENSGAGG00000004984	-	96	80.050	ENSPEMG00000022224	Polr1a	89	75.473	Peromyscus_maniculatus_bairdii
ENSGAGG00000004984	-	95	80.653	ENSPCIG00000004222	POLR1A	88	75.086	Phascolarctos_cinereus
ENSGAGG00000004984	-	95	71.009	ENSPFOG00000005025	polr1a	89	67.257	Poecilia_formosa
ENSGAGG00000004984	-	99	67.408	ENSPLAG00000021389	polr1a	89	67.521	Poecilia_latipinna
ENSGAGG00000004984	-	99	65.206	ENSPMEG00000006463	polr1a	89	65.705	Poecilia_mexicana
ENSGAGG00000004984	-	96	70.886	ENSPREG00000002389	polr1a	93	65.528	Poecilia_reticulata
ENSGAGG00000004984	-	96	80.025	ENSPPYG00000012217	POLR1A	89	74.467	Pongo_abelii
ENSGAGG00000004984	-	88	84.663	ENSPCAG00000011582	POLR1A	82	75.045	Procavia_capensis
ENSGAGG00000004984	-	96	80.657	ENSPCOG00000026987	POLR1A	89	75.423	Propithecus_coquereli
ENSGAGG00000004984	-	93	72.754	ENSPVAG00000012674	POLR1A	85	73.289	Pteropus_vampyrus
ENSGAGG00000004984	-	95	72.215	ENSPNYG00000000026	polr1a	89	67.808	Pundamilia_nyererei
ENSGAGG00000004984	-	95	74.362	ENSPNAG00000019223	polr1a	92	67.079	Pygocentrus_nattereri
ENSGAGG00000004984	-	96	80.779	ENSRNOG00000009545	Polr1a	89	75.882	Rattus_norvegicus
ENSGAGG00000004984	-	96	80.657	ENSRBIG00000028335	POLR1A	89	75.586	Rhinopithecus_bieti
ENSGAGG00000004984	-	96	80.657	ENSRROG00000031473	POLR1A	99	74.005	Rhinopithecus_roxellana
ENSGAGG00000004984	-	99	38.477	YOR341W	RPA190	87	38.462	Saccharomyces_cerevisiae
ENSGAGG00000004984	-	96	80.278	ENSSBOG00000030262	POLR1A	90	74.564	Saimiri_boliviensis_boliviensis
ENSGAGG00000004984	-	99	68.431	ENSSHAG00000014739	POLR1A	90	68.782	Sarcophilus_harrisii
ENSGAGG00000004984	-	95	77.436	ENSSFOG00015019716	polr1a	89	70.125	Scleropages_formosus
ENSGAGG00000004984	-	95	72.144	ENSSMAG00000014342	polr1a	91	65.800	Scophthalmus_maximus
ENSGAGG00000004984	-	95	72.983	ENSSDUG00000014631	polr1a	89	69.226	Seriola_dumerili
ENSGAGG00000004984	-	99	66.776	ENSSLDG00000024095	polr1a	90	66.972	Seriola_lalandi_dorsalis
ENSGAGG00000004984	-	73	97.561	ENSSARG00000003136	-	66	97.561	Sorex_araneus
ENSGAGG00000004984	-	96	85.223	ENSSPUG00000004215	POLR1A	88	83.232	Sphenodon_punctatus
ENSGAGG00000004984	-	92	71.561	ENSSPAG00000016341	polr1a	80	73.000	Stegastes_partitus
ENSGAGG00000004984	-	96	81.795	ENSSSCG00000008226	POLR1A	87	78.749	Sus_scrofa
ENSGAGG00000004984	-	96	84.625	ENSTGUG00000010704	POLR1A	91	79.306	Taeniopygia_guttata
ENSGAGG00000004984	-	95	70.566	ENSTRUG00000002210	polr1a	89	65.658	Takifugu_rubripes
ENSGAGG00000004984	-	95	65.820	ENSTNIG00000010116	polr1a	89	60.479	Tetraodon_nigroviridis
ENSGAGG00000004984	-	65	92.308	ENSTBEG00000008646	POLR1A	59	92.308	Tupaia_belangeri
ENSGAGG00000004984	-	95	78.372	ENSTTRG00000008597	POLR1A	90	72.403	Tursiops_truncatus
ENSGAGG00000004984	-	76	76.271	ENSUAMG00000012158	-	94	76.271	Ursus_americanus
ENSGAGG00000004984	-	97	80.328	ENSUMAG00000006700	POLR1A	89	75.893	Ursus_maritimus
ENSGAGG00000004984	-	95	82.061	ENSVVUG00000001245	POLR1A	89	76.623	Vulpes_vulpes
ENSGAGG00000004984	-	99	68.896	ENSXETG00000001952	polr1a	87	70.513	Xenopus_tropicalis
ENSGAGG00000004984	-	66	75.370	ENSXCOG00000013384	polr1a	72	75.370	Xiphophorus_couchianus
ENSGAGG00000004984	-	99	67.479	ENSXMAG00000004032	polr1a	89	67.566	Xiphophorus_maculatus