EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000006166 (Gene tree)
Gene ID: -
Gene Symbol: SRBD1
Alias: FLJ10379
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 227596 bases
Position: chrPPEB01002490.1:1996-229591
Accession: 25521
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000010524	S1	PF00575.23	1.5e-09	1	1
ENSGAGP00000010627	S1	PF00575.23	1.6e-09	1	1
ENSGAGP00000010624	S1	PF00575.23	1.6e-09	1	1
ENSGAGP00000010371	S1	PF00575.23	1.6e-09	1	1
ENSGAGP00000010386	S1	PF00575.23	1.7e-09	1	1
ENSGAGP00000010379	S1	PF00575.23	1.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000012191	SRBD1-207	2511	-	ENSGAGP00000010627	836 (aa)	-	-
ENSGAGT00000012084	SRBD1-204	2427	-	ENSGAGP00000010524	808 (aa)	-	-
ENSGAGT00000012187	SRBD1-206	2529	-	ENSGAGP00000010624	842 (aa)	-	-
ENSGAGT00000011907	SRBD1-201	3751	-	ENSGAGP00000010371	833 (aa)	-	-
ENSGAGT00000011923	SRBD1-203	2619	-	ENSGAGP00000010386	872 (aa)	-	-
ENSGAGT00000011915	SRBD1-202	2712	-	ENSGAGP00000010379	903 (aa)	-	-
ENSGAGT00000012163	SRBD1-205	2514	-	ENSGAGP00000010601	837 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000006166's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000006166's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000006166	SRBD1	99	81.205	ENSG00000068784	SRBD1	83	81.205	Homo_sapiens
ENSGAGG00000006166	SRBD1	99	58.983	ENSAPOG00000005103	si:ch211-117n7.8	83	59.456	Acanthochromis_polyacanthus
ENSGAGG00000006166	SRBD1	99	81.273	ENSAMEG00000005993	SRBD1	84	81.273	Ailuropoda_melanoleuca
ENSGAGG00000006166	SRBD1	99	57.788	ENSACIG00000009875	si:ch211-117n7.8	85	57.477	Amphilophus_citrinellus
ENSGAGG00000006166	SRBD1	99	59.107	ENSAOCG00000024718	si:ch211-117n7.8	84	59.342	Amphiprion_ocellaris
ENSGAGG00000006166	SRBD1	99	59.459	ENSAPEG00000002645	si:ch211-117n7.8	87	59.459	Amphiprion_percula
ENSGAGG00000006166	SRBD1	99	58.977	ENSATEG00000010844	si:ch211-117n7.8	83	58.977	Anabas_testudineus
ENSGAGG00000006166	SRBD1	99	86.571	ENSAPLG00000006313	SRBD1	84	86.571	Anas_platyrhynchos
ENSGAGG00000006166	SRBD1	99	80.505	ENSANAG00000025573	SRBD1	84	80.505	Aotus_nancymaae
ENSGAGG00000006166	SRBD1	99	58.706	ENSACLG00000024219	si:ch211-117n7.8	82	59.059	Astatotilapia_calliptera
ENSGAGG00000006166	SRBD1	99	61.356	ENSAMXG00000004294	SRBD1	83	61.684	Astyanax_mexicanus
ENSGAGG00000006166	SRBD1	99	81.055	ENSBTAG00000007508	SRBD1	81	81.055	Bos_taurus
ENSGAGG00000006166	SRBD1	87	30.464	WBGene00022830	ZK973.1	91	30.464	Caenorhabditis_elegans
ENSGAGG00000006166	SRBD1	99	80.505	ENSCJAG00000000727	SRBD1	84	80.505	Callithrix_jacchus
ENSGAGG00000006166	SRBD1	99	81.459	ENSCAFG00000002554	SRBD1	84	81.459	Canis_familiaris
ENSGAGG00000006166	SRBD1	99	80.552	ENSCAFG00020026284	SRBD1	97	80.552	Canis_lupus_dingo
ENSGAGG00000006166	SRBD1	99	81.415	ENSCHIG00000016535	SRBD1	83	81.415	Capra_hircus
ENSGAGG00000006166	SRBD1	99	81.243	ENSTSYG00000012797	SRBD1	84	81.243	Carlito_syrichta
ENSGAGG00000006166	SRBD1	99	80.792	ENSCPOG00000004773	SRBD1	85	80.719	Cavia_porcellus
ENSGAGG00000006166	SRBD1	99	80.866	ENSCCAG00000025589	SRBD1	84	80.866	Cebus_capucinus
ENSGAGG00000006166	SRBD1	99	81.107	ENSCATG00000039530	SRBD1	84	81.107	Cercocebus_atys
ENSGAGG00000006166	SRBD1	99	81.535	ENSCLAG00000008623	SRBD1	84	81.535	Chinchilla_lanigera
ENSGAGG00000006166	SRBD1	99	81.227	ENSCSAG00000013350	SRBD1	84	81.227	Chlorocebus_sabaeus
ENSGAGG00000006166	SRBD1	84	86.275	ENSCHOG00000003805	SRBD1	74	86.275	Choloepus_hoffmanni
ENSGAGG00000006166	SRBD1	100	97.959	ENSCPBG00000005677	SRBD1	96	91.753	Chrysemys_picta_bellii
ENSGAGG00000006166	SRBD1	94	42.748	ENSCING00000005950	-	99	42.748	Ciona_intestinalis
ENSGAGG00000006166	SRBD1	95	43.001	ENSCSAVG00000000861	-	99	43.001	Ciona_savignyi
ENSGAGG00000006166	SRBD1	99	80.866	ENSCANG00000016307	SRBD1	84	80.866	Colobus_angolensis_palliatus
ENSGAGG00000006166	SRBD1	99	80.912	ENSCGRG00001000513	Srbd1	84	80.912	Cricetulus_griseus_chok1gshd
ENSGAGG00000006166	SRBD1	99	80.912	ENSCGRG00000002283	Srbd1	84	80.912	Cricetulus_griseus_crigri
ENSGAGG00000006166	SRBD1	99	57.814	ENSCSEG00000000856	si:ch211-117n7.8	84	57.814	Cynoglossus_semilaevis
ENSGAGG00000006166	SRBD1	99	58.962	ENSCVAG00000020212	si:ch211-117n7.8	94	55.713	Cyprinodon_variegatus
ENSGAGG00000006166	SRBD1	99	80.668	ENSDNOG00000018686	SRBD1	84	80.668	Dasypus_novemcinctus
ENSGAGG00000006166	SRBD1	99	79.232	ENSDORG00000010468	Srbd1	84	79.232	Dipodomys_ordii
ENSGAGG00000006166	SRBD1	94	39.434	FBgn0051156	CG31156	78	39.889	Drosophila_melanogaster
ENSGAGG00000006166	SRBD1	90	74.955	ENSETEG00000000739	SRBD1	82	71.924	Echinops_telfairi
ENSGAGG00000006166	SRBD1	87	49.183	ENSEBUG00000008902	si:ch211-117n7.8	96	49.183	Eptatretus_burgeri
ENSGAGG00000006166	SRBD1	99	78.922	ENSEASG00005003132	SRBD1	98	81.132	Equus_asinus_asinus
ENSGAGG00000006166	SRBD1	99	82.036	ENSECAG00000013865	SRBD1	82	82.036	Equus_caballus
ENSGAGG00000006166	SRBD1	99	62.352	ENSELUG00000012592	si:ch211-117n7.8	80	62.352	Esox_lucius
ENSGAGG00000006166	SRBD1	99	81.557	ENSFCAG00000005101	SRBD1	84	81.557	Felis_catus
ENSGAGG00000006166	SRBD1	99	83.715	ENSFALG00000012966	SRBD1	96	76.657	Ficedula_albicollis
ENSGAGG00000006166	SRBD1	100	80.456	ENSFDAG00000016670	SRBD1	85	80.456	Fukomys_damarensis
ENSGAGG00000006166	SRBD1	99	58.726	ENSFHEG00000019480	si:ch211-117n7.8	82	58.726	Fundulus_heteroclitus
ENSGAGG00000006166	SRBD1	60	54.176	ENSGMOG00000018010	-	100	54.176	Gadus_morhua
ENSGAGG00000006166	SRBD1	100	85.714	ENSGALG00000009990	SRBD1	96	75.478	Gallus_gallus
ENSGAGG00000006166	SRBD1	99	58.422	ENSGAFG00000019664	si:ch211-117n7.8	84	58.422	Gambusia_affinis
ENSGAGG00000006166	SRBD1	74	61.661	ENSGACG00000010794	si:ch211-117n7.8	95	68.208	Gasterosteus_aculeatus
ENSGAGG00000006166	SRBD1	99	81.325	ENSGGOG00000005910	SRBD1	86	81.325	Gorilla_gorilla
ENSGAGG00000006166	SRBD1	99	51.683	ENSHBUG00000013207	si:ch211-117n7.8	85	52.043	Haplochromis_burtoni
ENSGAGG00000006166	SRBD1	100	80.456	ENSHGLG00000018153	-	84	80.456	Heterocephalus_glaber_female
ENSGAGG00000006166	SRBD1	100	80.336	ENSHGLG00100015183	-	88	76.411	Heterocephalus_glaber_male
ENSGAGG00000006166	SRBD1	99	61.962	ENSIPUG00000009661	srbd1	84	61.962	Ictalurus_punctatus
ENSGAGG00000006166	SRBD1	99	81.655	ENSSTOG00000005898	SRBD1	84	81.655	Ictidomys_tridecemlineatus
ENSGAGG00000006166	SRBD1	99	76.287	ENSJJAG00000022244	Srbd1	89	71.617	Jaculus_jaculus
ENSGAGG00000006166	SRBD1	99	58.491	ENSKMAG00000003473	si:ch211-117n7.8	83	58.491	Kryptolebias_marmoratus
ENSGAGG00000006166	SRBD1	99	58.956	ENSLBEG00000027518	si:ch211-117n7.8	82	58.956	Labrus_bergylta
ENSGAGG00000006166	SRBD1	99	74.970	ENSLACG00000009790	SRBD1	98	74.970	Latimeria_chalumnae
ENSGAGG00000006166	SRBD1	99	66.667	ENSLOCG00000016360	si:ch211-117n7.8	84	66.667	Lepisosteus_oculatus
ENSGAGG00000006166	SRBD1	99	81.227	ENSMFAG00000042026	SRBD1	84	81.227	Macaca_fascicularis
ENSGAGG00000006166	SRBD1	99	81.227	ENSMMUG00000003490	SRBD1	84	81.227	Macaca_mulatta
ENSGAGG00000006166	SRBD1	99	78.339	ENSMNEG00000034701	SRBD1	83	78.339	Macaca_nemestrina
ENSGAGG00000006166	SRBD1	99	80.987	ENSMLEG00000000745	SRBD1	84	80.987	Mandrillus_leucophaeus
ENSGAGG00000006166	SRBD1	98	57.623	ENSMAMG00000021921	si:ch211-117n7.8	83	58.026	Mastacembelus_armatus
ENSGAGG00000006166	SRBD1	99	58.706	ENSMZEG00005027369	si:ch211-117n7.8	82	59.059	Maylandia_zebra
ENSGAGG00000006166	SRBD1	95	81.227	ENSMGAG00000010273	SRBD1	99	81.227	Meleagris_gallopavo
ENSGAGG00000006166	SRBD1	97	76.247	ENSMAUG00000013916	Srbd1	99	77.116	Mesocricetus_auratus
ENSGAGG00000006166	SRBD1	99	81.175	ENSMICG00000007835	SRBD1	84	81.175	Microcebus_murinus
ENSGAGG00000006166	SRBD1	99	79.832	ENSMOCG00000018716	Srbd1	84	79.832	Microtus_ochrogaster
ENSGAGG00000006166	SRBD1	99	57.851	ENSMMOG00000007507	si:ch211-117n7.8	87	57.851	Mola_mola
ENSGAGG00000006166	SRBD1	98	58.873	ENSMALG00000001562	si:ch211-117n7.8	83	59.128	Monopterus_albus
ENSGAGG00000006166	SRBD1	99	79.327	MGP_CAROLIEiJ_G0021934	Srbd1	86	97.143	Mus_caroli
ENSGAGG00000006166	SRBD1	99	79.447	ENSMUSG00000024135	Srbd1	99	78.571	Mus_musculus
ENSGAGG00000006166	SRBD1	99	78.528	MGP_PahariEiJ_G0020924	Srbd1	84	78.528	Mus_pahari
ENSGAGG00000006166	SRBD1	99	79.447	MGP_SPRETEiJ_G0022850	Srbd1	84	79.447	Mus_spretus
ENSGAGG00000006166	SRBD1	99	80.000	ENSMLUG00000007039	SRBD1	84	80.000	Myotis_lucifugus
ENSGAGG00000006166	SRBD1	99	77.674	ENSNGAG00000011893	Srbd1	89	76.190	Nannospalax_galili
ENSGAGG00000006166	SRBD1	99	57.688	ENSNBRG00000012873	si:ch211-117n7.8	94	52.047	Neolamprologus_brichardi
ENSGAGG00000006166	SRBD1	99	81.566	ENSNLEG00000016877	SRBD1	83	81.566	Nomascus_leucogenys
ENSGAGG00000006166	SRBD1	99	79.567	ENSODEG00000012095	SRBD1	85	79.567	Octodon_degus
ENSGAGG00000006166	SRBD1	99	59.928	ENSONIG00000000945	si:ch211-117n7.8	99	59.976	Oreochromis_niloticus
ENSGAGG00000006166	SRBD1	99	80.838	ENSOCUG00000015385	SRBD1	84	81.317	Oryctolagus_cuniculus
ENSGAGG00000006166	SRBD1	99	55.595	ENSORLG00000004427	si:ch211-117n7.8	82	55.595	Oryzias_latipes
ENSGAGG00000006166	SRBD1	99	58.588	ENSORLG00020012792	si:ch211-117n7.8	82	58.588	Oryzias_latipes_hni
ENSGAGG00000006166	SRBD1	99	58.186	ENSORLG00015018598	si:ch211-117n7.8	82	58.186	Oryzias_latipes_hsok
ENSGAGG00000006166	SRBD1	99	58.057	ENSOMEG00000012229	si:ch211-117n7.8	82	58.294	Oryzias_melastigma
ENSGAGG00000006166	SRBD1	99	76.895	ENSOGAG00000001076	SRBD1	84	76.895	Otolemur_garnettii
ENSGAGG00000006166	SRBD1	99	76.295	ENSOARG00000005958	SRBD1	85	76.295	Ovis_aries
ENSGAGG00000006166	SRBD1	99	81.325	ENSPPAG00000038442	SRBD1	83	81.325	Pan_paniscus
ENSGAGG00000006166	SRBD1	99	81.437	ENSPPRG00000003449	SRBD1	84	81.437	Panthera_pardus
ENSGAGG00000006166	SRBD1	99	81.557	ENSPTIG00000012495	SRBD1	84	81.557	Panthera_tigris_altaica
ENSGAGG00000006166	SRBD1	99	81.325	ENSPTRG00000011889	SRBD1	83	81.325	Pan_troglodytes
ENSGAGG00000006166	SRBD1	99	81.227	ENSPANG00000008063	SRBD1	84	81.227	Papio_anubis
ENSGAGG00000006166	SRBD1	99	62.065	ENSPKIG00000021973	si:ch211-117n7.8	85	62.065	Paramormyrops_kingsleyae
ENSGAGG00000006166	SRBD1	100	94.238	ENSPSIG00000008992	SRBD1	96	86.667	Pelodiscus_sinensis
ENSGAGG00000006166	SRBD1	99	56.874	ENSPMGG00000013348	si:ch211-117n7.8	86	57.126	Periophthalmus_magnuspinnatus
ENSGAGG00000006166	SRBD1	99	78.103	ENSPEMG00000020684	Srbd1	84	78.103	Peromyscus_maniculatus_bairdii
ENSGAGG00000006166	SRBD1	99	58.893	ENSPFOG00000010650	si:ch211-117n7.8	83	58.893	Poecilia_formosa
ENSGAGG00000006166	SRBD1	99	59.011	ENSPLAG00000002141	si:ch211-117n7.8	83	59.011	Poecilia_latipinna
ENSGAGG00000006166	SRBD1	99	59.011	ENSPMEG00000018537	si:ch211-117n7.8	83	59.011	Poecilia_mexicana
ENSGAGG00000006166	SRBD1	99	58.844	ENSPREG00000003258	si:ch211-117n7.8	85	58.844	Poecilia_reticulata
ENSGAGG00000006166	SRBD1	99	73.596	ENSPPYG00000012444	SRBD1	85	71.854	Pongo_abelii
ENSGAGG00000006166	SRBD1	90	73.670	ENSPCAG00000005629	SRBD1	80	73.670	Procavia_capensis
ENSGAGG00000006166	SRBD1	99	67.784	ENSPCOG00000017669	SRBD1	83	67.784	Propithecus_coquereli
ENSGAGG00000006166	SRBD1	99	70.743	ENSPVAG00000001782	SRBD1	82	77.885	Pteropus_vampyrus
ENSGAGG00000006166	SRBD1	99	56.257	ENSPNYG00000000508	si:ch211-117n7.8	85	56.615	Pundamilia_nyererei
ENSGAGG00000006166	SRBD1	99	62.799	ENSPNAG00000013492	SRBD1	86	60.739	Pygocentrus_nattereri
ENSGAGG00000006166	SRBD1	99	78.960	ENSRNOG00000014720	Srbd1	83	79.323	Rattus_norvegicus
ENSGAGG00000006166	SRBD1	99	80.866	ENSRBIG00000033486	SRBD1	84	80.866	Rhinopithecus_bieti
ENSGAGG00000006166	SRBD1	99	80.866	ENSRROG00000041599	SRBD1	84	80.866	Rhinopithecus_roxellana
ENSGAGG00000006166	SRBD1	99	80.361	ENSSBOG00000024982	SRBD1	84	80.361	Saimiri_boliviensis_boliviensis
ENSGAGG00000006166	SRBD1	99	61.091	ENSSFOG00015001128	si:ch211-117n7.8	97	55.404	Scleropages_formosus
ENSGAGG00000006166	SRBD1	99	58.323	ENSSMAG00000018256	si:ch211-117n7.8	82	58.560	Scophthalmus_maximus
ENSGAGG00000006166	SRBD1	99	58.323	ENSSLDG00000023189	si:ch211-117n7.8	83	58.323	Seriola_lalandi_dorsalis
ENSGAGG00000006166	SRBD1	97	76.316	ENSSARG00000009740	SRBD1	83	76.316	Sorex_araneus
ENSGAGG00000006166	SRBD1	100	85.234	ENSSPUG00000010475	SRBD1	99	80.197	Sphenodon_punctatus
ENSGAGG00000006166	SRBD1	99	57.025	ENSSPAG00000008092	-	91	52.117	Stegastes_partitus
ENSGAGG00000006166	SRBD1	99	82.156	ENSSSCG00000008445	SRBD1	83	82.156	Sus_scrofa
ENSGAGG00000006166	SRBD1	99	84.337	ENSTGUG00000003878	SRBD1	100	84.337	Taeniopygia_guttata
ENSGAGG00000006166	SRBD1	99	58.019	ENSTRUG00000007080	si:ch211-117n7.8	98	54.951	Takifugu_rubripes
ENSGAGG00000006166	SRBD1	99	57.344	ENSTNIG00000007464	si:ch211-117n7.8	88	53.879	Tetraodon_nigroviridis
ENSGAGG00000006166	SRBD1	77	95.745	ENSTBEG00000004556	SRBD1	61	95.745	Tupaia_belangeri
ENSGAGG00000006166	SRBD1	93	82.406	ENSTTRG00000011871	SRBD1	78	82.406	Tursiops_truncatus
ENSGAGG00000006166	SRBD1	99	81.557	ENSUAMG00000008126	SRBD1	97	78.417	Ursus_americanus
ENSGAGG00000006166	SRBD1	99	81.437	ENSUMAG00000012902	SRBD1	83	81.437	Ursus_maritimus
ENSGAGG00000006166	SRBD1	99	81.198	ENSVPAG00000006825	SRBD1	92	81.198	Vicugna_pacos
ENSGAGG00000006166	SRBD1	99	81.437	ENSVVUG00000005389	SRBD1	83	84.416	Vulpes_vulpes
ENSGAGG00000006166	SRBD1	98	70.909	ENSXETG00000002760	srbd1	84	70.144	Xenopus_tropicalis
ENSGAGG00000006166	SRBD1	99	58.657	ENSXMAG00000016861	si:ch211-117n7.8	83	58.657	Xiphophorus_maculatus