EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000006848 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 9455 bases
Position: chrPPEB01005428.1:62574-72028
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000008650	zf-C2H2	PF00096.26	9.4e-46	1	6
ENSGAGP00000008650	zf-C2H2	PF00096.26	9.4e-46	2	6
ENSGAGP00000008650	zf-C2H2	PF00096.26	9.4e-46	3	6
ENSGAGP00000008650	zf-C2H2	PF00096.26	9.4e-46	4	6
ENSGAGP00000008650	zf-C2H2	PF00096.26	9.4e-46	5	6
ENSGAGP00000008650	zf-C2H2	PF00096.26	9.4e-46	6	6
ENSGAGP00000008653	zf-C2H2	PF00096.26	9.5e-46	1	6
ENSGAGP00000008653	zf-C2H2	PF00096.26	9.5e-46	2	6
ENSGAGP00000008653	zf-C2H2	PF00096.26	9.5e-46	3	6
ENSGAGP00000008653	zf-C2H2	PF00096.26	9.5e-46	4	6
ENSGAGP00000008653	zf-C2H2	PF00096.26	9.5e-46	5	6
ENSGAGP00000008653	zf-C2H2	PF00096.26	9.5e-46	6	6
ENSGAGP00000008645	zf-C2H2	PF00096.26	1.1e-44	1	6
ENSGAGP00000008645	zf-C2H2	PF00096.26	1.1e-44	2	6
ENSGAGP00000008645	zf-C2H2	PF00096.26	1.1e-44	3	6
ENSGAGP00000008645	zf-C2H2	PF00096.26	1.1e-44	4	6
ENSGAGP00000008645	zf-C2H2	PF00096.26	1.1e-44	5	6
ENSGAGP00000008645	zf-C2H2	PF00096.26	1.1e-44	6	6
ENSGAGP00000008645	zf-met	PF12874.7	1.2e-10	1	1
ENSGAGP00000008650	zf-met	PF12874.7	2.6e-10	1	1
ENSGAGP00000008653	zf-met	PF12874.7	3.5e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000009944	-	1215	-	ENSGAGP00000008650	404 (aa)	-	-
ENSGAGT00000009947	-	1251	-	ENSGAGP00000008653	416 (aa)	-	-
ENSGAGT00000009939	-	1083	-	ENSGAGP00000008645	360 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000006848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000006848's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000006848	-	59	50.270	ENSGAGG00000015232	-	75	50.270
ENSGAGG00000006848	-	66	59.398	ENSGAGG00000001469	-	98	59.398
ENSGAGG00000006848	-	82	55.882	ENSGAGG00000020594	-	95	59.162
ENSGAGG00000006848	-	53	57.754	ENSGAGG00000002828	-	68	55.556
ENSGAGG00000006848	-	62	53.738	ENSGAGG00000012452	-	76	53.738
ENSGAGG00000006848	-	68	43.182	ENSGAGG00000022571	ZNF319	95	43.182
ENSGAGG00000006848	-	67	53.266	ENSGAGG00000018445	-	98	53.266
ENSGAGG00000006848	-	58	58.730	ENSGAGG00000011574	-	93	58.115
ENSGAGG00000006848	-	53	45.669	ENSGAGG00000015899	GFI1	99	45.669
ENSGAGG00000006848	-	64	36.316	ENSGAGG00000020362	PRDM5	79	34.568
ENSGAGG00000006848	-	54	57.812	ENSGAGG00000001645	-	63	58.511
ENSGAGG00000006848	-	59	56.684	ENSGAGG00000019349	-	78	55.497
ENSGAGG00000006848	-	64	48.113	ENSGAGG00000017239	ZBTB14	61	48.113
ENSGAGG00000006848	-	53	56.627	ENSGAGG00000020168	-	76	52.525
ENSGAGG00000006848	-	69	54.589	ENSGAGG00000006960	-	86	57.823
ENSGAGG00000006848	-	73	54.774	ENSGAGG00000011487	-	84	54.774
ENSGAGG00000006848	-	60	44.444	ENSGAGG00000021327	GFI1B	55	44.444
ENSGAGG00000006848	-	55	50.909	ENSGAGG00000005331	-	80	51.163
ENSGAGG00000006848	-	62	57.237	ENSGAGG00000004740	-	96	55.488
ENSGAGG00000006848	-	55	35.345	ENSGAGG00000022082	PRDM15	50	34.959
ENSGAGG00000006848	-	64	57.143	ENSGAGG00000006323	-	90	56.684
ENSGAGG00000006848	-	68	55.080	ENSGAGG00000011366	-	93	55.080
ENSGAGG00000006848	-	58	58.571	ENSGAGG00000009739	-	99	58.571
ENSGAGG00000006848	-	62	52.809	ENSGAGG00000016529	-	97	52.809
ENSGAGG00000006848	-	70	53.403	ENSGAGG00000015451	-	96	54.450
ENSGAGG00000006848	-	74	58.421	ENSGAGG00000002214	-	97	58.421
ENSGAGG00000006848	-	73	56.545	ENSGAGG00000009272	-	97	54.872
ENSGAGG00000006848	-	54	52.147	ENSGAGG00000004926	-	96	52.147
ENSGAGG00000006848	-	56	53.977	ENSGAGG00000018885	-	65	53.977
ENSGAGG00000006848	-	61	53.968	ENSGAGG00000014356	-	80	55.556
ENSGAGG00000006848	-	53	57.895	ENSGAGG00000010492	-	76	57.895
ENSGAGG00000006848	-	53	49.468	ENSGAGG00000017094	-	50	49.495
ENSGAGG00000006848	-	69	58.289	ENSGAGG00000014389	-	98	58.289
ENSGAGG00000006848	-	73	57.143	ENSGAGG00000013851	-	76	57.219
ENSGAGG00000006848	-	73	57.672	ENSGAGG00000002179	-	96	57.672
ENSGAGG00000006848	-	71	54.545	ENSGAGG00000001387	-	65	54.545
ENSGAGG00000006848	-	68	56.545	ENSGAGG00000017986	-	97	56.545
ENSGAGG00000006848	-	61	47.573	ENSGAGG00000011399	-	86	48.529
ENSGAGG00000006848	-	69	56.784	ENSGAGG00000010833	-	92	56.784
ENSGAGG00000006848	-	66	39.487	ENSGAGG00000014176	ZBTB16	52	39.487
ENSGAGG00000006848	-	75	60.000	ENSGAGG00000006683	-	95	60.000
ENSGAGG00000006848	-	58	46.377	ENSGAGG00000003095	ZNF865	85	46.377
ENSGAGG00000006848	-	60	56.085	ENSGAGG00000020134	-	65	56.383
ENSGAGG00000006848	-	58	86.154	ENSGAGG00000006846	-	97	83.654
ENSGAGG00000006848	-	54	57.754	ENSGAGG00000000971	-	88	57.754
ENSGAGG00000006848	-	63	54.787	ENSGAGG00000010324	-	71	54.787
ENSGAGG00000006848	-	66	57.754	ENSGAGG00000008773	-	93	57.672
ENSGAGG00000006848	-	56	50.602	ENSGAGG00000013021	-	88	50.602
ENSGAGG00000006848	-	61	54.386	ENSGAGG00000005805	-	91	54.386
ENSGAGG00000006848	-	86	49.231	ENSGAGG00000017640	-	99	47.170
ENSGAGG00000006848	-	64	53.846	ENSGAGG00000007230	-	79	58.683

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000006848	-	98	56.322	ENSCJAG00000019885	ZNF500	89	56.322	Callithrix_jacchus
ENSGAGG00000006848	-	55	58.559	ENSCAFG00000023007	-	55	58.559	Canis_familiaris
ENSGAGG00000006848	-	55	58.559	ENSCAFG00020024945	-	55	58.559	Canis_lupus_dingo
ENSGAGG00000006848	-	76	57.647	ENSMEUG00000015316	-	51	57.647	Notamacropus_eugenii
ENSGAGG00000006848	-	86	85.128	ENSPSIG00000016033	-	99	79.060	Pelodiscus_sinensis