EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000006956 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 20567 bases
Position: chrPPEB01007171.1:19798-40364
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000008796	KH_1	PF00013.29	2.3e-26	1	2
ENSGAGP00000008796	KH_1	PF00013.29	2.3e-26	2	2
ENSGAGP00000008796	KH_2	PF07650.17	8.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000010112	-	726	-	ENSGAGP00000008796	241 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000006956's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000006956's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000006956	-	76	66.851	ENSGAGG00000022116	PCBP4	63	66.851
ENSGAGG00000006956	-	53	40.351	ENSGAGG00000009498	NOVA2	55	40.351
ENSGAGG00000006956	-	82	74.510	ENSGAGG00000010410	PCBP2	61	76.020
ENSGAGG00000006956	-	72	83.240	ENSGAGG00000000271	-	90	83.240

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000006956	-	95	77.155	ENSAPOG00000016582	-	77	88.542	Acanthochromis_polyacanthus
ENSGAGG00000006956	-	76	90.217	ENSAPOG00000020003	pcbp3	67	90.217	Acanthochromis_polyacanthus
ENSGAGG00000006956	-	80	88.384	ENSAMEG00000001697	-	73	88.384	Ailuropoda_melanoleuca
ENSGAGG00000006956	-	87	90.909	ENSACIG00000010933	pcbp3	86	90.909	Amphilophus_citrinellus
ENSGAGG00000006956	-	95	77.056	ENSACIG00000002739	-	82	83.495	Amphilophus_citrinellus
ENSGAGG00000006956	-	76	87.368	ENSAOCG00000008592	-	82	87.368	Amphiprion_ocellaris
ENSGAGG00000006956	-	63	96.689	ENSAOCG00000007806	-	76	96.689	Amphiprion_ocellaris
ENSGAGG00000006956	-	86	88.263	ENSAPEG00000008011	pcbp3	76	88.263	Amphiprion_percula
ENSGAGG00000006956	-	76	89.362	ENSAPEG00000005209	-	77	89.362	Amphiprion_percula
ENSGAGG00000006956	-	86	90.821	ENSATEG00000015787	-	80	90.821	Anabas_testudineus
ENSGAGG00000006956	-	76	90.811	ENSATEG00000009833	-	77	90.811	Anabas_testudineus
ENSGAGG00000006956	-	88	80.645	ENSAPLG00000008951	-	62	80.645	Anas_platyrhynchos
ENSGAGG00000006956	-	78	89.744	ENSAPLG00000002975	-	76	89.744	Anas_platyrhynchos
ENSGAGG00000006956	-	88	91.284	ENSACAG00000004607	-	83	91.284	Anolis_carolinensis
ENSGAGG00000006956	-	94	75.210	ENSACAG00000009819	-	86	75.210	Anolis_carolinensis
ENSGAGG00000006956	-	68	80.791	ENSANAG00000030702	-	73	99.107	Aotus_nancymaae
ENSGAGG00000006956	-	86	87.793	ENSACLG00000011835	pcbp3	76	87.793	Astatotilapia_calliptera
ENSGAGG00000006956	-	76	89.130	ENSACLG00000003801	-	77	89.130	Astatotilapia_calliptera
ENSGAGG00000006956	-	74	78.212	ENSAMXG00000001760	zgc:110045	51	78.212	Astyanax_mexicanus
ENSGAGG00000006956	-	86	88.263	ENSAMXG00000003440	pcbp3	78	88.263	Astyanax_mexicanus
ENSGAGG00000006956	-	76	89.130	ENSAMXG00000013588	-	78	89.130	Astyanax_mexicanus
ENSGAGG00000006956	-	83	90.865	ENSCAFG00020019472	-	78	90.090	Canis_lupus_dingo
ENSGAGG00000006956	-	78	89.744	ENSCSAG00000007440	-	72	89.744	Chlorocebus_sabaeus
ENSGAGG00000006956	-	94	75.630	ENSCPBG00000000733	-	66	80.275	Chrysemys_picta_bellii
ENSGAGG00000006956	-	78	90.256	ENSCPBG00000012151	-	82	90.256	Chrysemys_picta_bellii
ENSGAGG00000006956	-	88	77.465	ENSCSEG00000016984	-	75	85.185	Cynoglossus_semilaevis
ENSGAGG00000006956	-	87	86.512	ENSCSEG00000000822	pcbp3	88	86.512	Cynoglossus_semilaevis
ENSGAGG00000006956	-	93	82.479	ENSCVAG00000014482	pcbp3	82	82.479	Cyprinodon_variegatus
ENSGAGG00000006956	-	78	89.062	ENSCVAG00000005262	-	79	89.062	Cyprinodon_variegatus
ENSGAGG00000006956	-	88	88.636	ENSDARG00000054378	pcbp3	90	88.636	Danio_rerio
ENSGAGG00000006956	-	78	72.308	ENSETEG00000015988	-	80	72.308	Echinops_telfairi
ENSGAGG00000006956	-	71	68.156	ENSEBUG00000016192	pcbp3	87	68.156	Eptatretus_burgeri
ENSGAGG00000006956	-	85	62.844	ENSEBUG00000005495	pcbp3	65	62.844	Eptatretus_burgeri
ENSGAGG00000006956	-	95	65.587	ENSEBUG00000007485	-	80	77.487	Eptatretus_burgeri
ENSGAGG00000006956	-	85	88.208	ENSELUG00000003521	pcbp3	75	88.208	Esox_lucius
ENSGAGG00000006956	-	78	89.947	ENSELUG00000001560	-	70	89.947	Esox_lucius
ENSGAGG00000006956	-	88	80.645	ENSFALG00000004411	-	58	80.645	Ficedula_albicollis
ENSGAGG00000006956	-	78	89.744	ENSFALG00000003949	-	80	89.744	Ficedula_albicollis
ENSGAGG00000006956	-	78	89.062	ENSFHEG00000006539	-	79	89.062	Fundulus_heteroclitus
ENSGAGG00000006956	-	76	90.217	ENSFHEG00000016615	pcbp3	79	90.217	Fundulus_heteroclitus
ENSGAGG00000006956	-	66	85.542	ENSGMOG00000011992	pcbp3	68	85.542	Gadus_morhua
ENSGAGG00000006956	-	83	53.991	ENSGMOG00000008611	-	71	60.221	Gadus_morhua
ENSGAGG00000006956	-	93	78.603	ENSGALG00000013155	-	88	78.603	Gallus_gallus
ENSGAGG00000006956	-	95	86.498	ENSGALG00000004394	-	81	99.338	Gallus_gallus
ENSGAGG00000006956	-	86	86.385	ENSGAFG00000011430	pcbp3	77	86.385	Gambusia_affinis
ENSGAGG00000006956	-	76	87.368	ENSGAFG00000010274	-	76	87.368	Gambusia_affinis
ENSGAGG00000006956	-	93	72.766	ENSGACG00000014955	-	79	72.766	Gasterosteus_aculeatus
ENSGAGG00000006956	-	76	86.842	ENSGACG00000002266	-	73	86.842	Gasterosteus_aculeatus
ENSGAGG00000006956	-	93	82.051	ENSHBUG00000010697	pcbp3	77	87.368	Haplochromis_burtoni
ENSGAGG00000006956	-	76	89.130	ENSHBUG00000021782	-	77	89.130	Haplochromis_burtoni
ENSGAGG00000006956	-	77	87.500	ENSHCOG00000006067	-	79	87.500	Hippocampus_comes
ENSGAGG00000006956	-	93	82.479	ENSHCOG00000017868	pcbp3	82	82.479	Hippocampus_comes
ENSGAGG00000006956	-	87	88.479	ENSIPUG00000006238	pcbp3	80	88.479	Ictalurus_punctatus
ENSGAGG00000006956	-	78	87.958	ENSKMAG00000018530	-	83	82.938	Kryptolebias_marmoratus
ENSGAGG00000006956	-	97	84.615	ENSKMAG00000003046	pcbp3	76	88.263	Kryptolebias_marmoratus
ENSGAGG00000006956	-	76	75.543	ENSLBEG00000006542	-	78	72.139	Labrus_bergylta
ENSGAGG00000006956	-	76	89.674	ENSLBEG00000006201	pcbp3	75	89.674	Labrus_bergylta
ENSGAGG00000006956	-	88	78.802	ENSLACG00000010804	zgc:110045	58	78.802	Latimeria_chalumnae
ENSGAGG00000006956	-	88	91.284	ENSLACG00000010386	pcbp3	58	91.284	Latimeria_chalumnae
ENSGAGG00000006956	-	94	75.630	ENSLOCG00000005058	zgc:110045	73	75.630	Lepisosteus_oculatus
ENSGAGG00000006956	-	88	89.908	ENSLOCG00000009369	pcbp3	80	89.908	Lepisosteus_oculatus
ENSGAGG00000006956	-	76	90.217	ENSMAMG00000022336	pcbp3	73	90.217	Mastacembelus_armatus
ENSGAGG00000006956	-	76	89.730	ENSMAMG00000011620	-	77	89.730	Mastacembelus_armatus
ENSGAGG00000006956	-	85	85.294	ENSMZEG00005014882	-	74	88.298	Maylandia_zebra
ENSGAGG00000006956	-	93	82.479	ENSMZEG00005008993	pcbp3	90	85.909	Maylandia_zebra
ENSGAGG00000006956	-	75	82.632	ENSMGAG00000001883	-	69	71.818	Meleagris_gallopavo
ENSGAGG00000006956	-	88	81.106	ENSMGAG00000006794	-	58	81.106	Meleagris_gallopavo
ENSGAGG00000006956	-	76	89.674	ENSMMOG00000005216	-	77	89.674	Mola_mola
ENSGAGG00000006956	-	76	84.211	ENSMMOG00000000730	pcbp3	69	84.211	Mola_mola
ENSGAGG00000006956	-	56	100.000	ENSMODG00000027884	-	68	100.000	Monodelphis_domestica
ENSGAGG00000006956	-	86	90.821	ENSMALG00000000691	pcbp3	88	89.720	Monopterus_albus
ENSGAGG00000006956	-	88	83.486	ENSMPUG00000001779	-	77	83.486	Mustela_putorius_furo
ENSGAGG00000006956	-	85	85.024	ENSNBRG00000016714	-	86	84.804	Neolamprologus_brichardi
ENSGAGG00000006956	-	93	84.211	ENSNBRG00000016409	-	82	84.211	Neolamprologus_brichardi
ENSGAGG00000006956	-	100	80.709	ENSOPRG00000003431	-	94	85.837	Ochotona_princeps
ENSGAGG00000006956	-	84	81.731	ENSONIG00000004611	-	78	86.316	Oreochromis_niloticus
ENSGAGG00000006956	-	93	82.051	ENSONIG00000012122	-	80	82.051	Oreochromis_niloticus
ENSGAGG00000006956	-	88	80.804	ENSOCUG00000002696	-	81	80.804	Oryctolagus_cuniculus
ENSGAGG00000006956	-	76	87.368	ENSORLG00000000059	pcbp3	79	87.368	Oryzias_latipes
ENSGAGG00000006956	-	76	87.368	ENSORLG00000022739	-	77	87.368	Oryzias_latipes
ENSGAGG00000006956	-	76	90.217	ENSORLG00020006124	-	76	90.217	Oryzias_latipes_hni
ENSGAGG00000006956	-	76	87.368	ENSORLG00020012671	pcbp3	77	87.368	Oryzias_latipes_hni
ENSGAGG00000006956	-	76	87.368	ENSORLG00015008051	-	76	87.368	Oryzias_latipes_hsok
ENSGAGG00000006956	-	76	87.368	ENSORLG00015000429	pcbp3	77	87.368	Oryzias_latipes_hsok
ENSGAGG00000006956	-	63	96.689	ENSOMEG00000020811	pcbp3	72	96.689	Oryzias_melastigma
ENSGAGG00000006956	-	76	89.674	ENSOMEG00000020162	-	76	89.674	Oryzias_melastigma
ENSGAGG00000006956	-	80	85.507	ENSOGAG00000008044	-	73	85.507	Otolemur_garnettii
ENSGAGG00000006956	-	76	91.848	ENSPKIG00000019329	pcbp3	77	91.848	Paramormyrops_kingsleyae
ENSGAGG00000006956	-	89	76.018	ENSPKIG00000020913	-	94	76.995	Paramormyrops_kingsleyae
ENSGAGG00000006956	-	78	75.897	ENSPSIG00000014970	-	75	75.897	Pelodiscus_sinensis
ENSGAGG00000006956	-	61	79.470	ENSPSIG00000008350	-	57	79.470	Pelodiscus_sinensis
ENSGAGG00000006956	-	86	88.732	ENSPMGG00000022383	pcbp3	77	88.732	Periophthalmus_magnuspinnatus
ENSGAGG00000006956	-	78	79.487	ENSPMAG00000004637	-	100	79.487	Petromyzon_marinus
ENSGAGG00000006956	-	85	63.014	ENSPMAG00000004551	pcbp3	62	63.014	Petromyzon_marinus
ENSGAGG00000006956	-	88	91.284	ENSPCIG00000028092	-	86	90.256	Phascolarctos_cinereus
ENSGAGG00000006956	-	93	80.769	ENSPLAG00000011449	pcbp3	72	80.769	Poecilia_latipinna
ENSGAGG00000006956	-	76	90.217	ENSPLAG00000004074	-	69	90.217	Poecilia_latipinna
ENSGAGG00000006956	-	93	80.769	ENSPMEG00000021239	pcbp3	96	82.533	Poecilia_mexicana
ENSGAGG00000006956	-	93	82.511	ENSPMEG00000006653	-	90	79.279	Poecilia_mexicana
ENSGAGG00000006956	-	76	87.500	ENSPREG00000015736	pcbp3	78	87.500	Poecilia_reticulata
ENSGAGG00000006956	-	91	78.222	ENSPREG00000020585	-	96	78.222	Poecilia_reticulata
ENSGAGG00000006956	-	76	87.368	ENSPNYG00000012326	pcbp3	75	87.368	Pundamilia_nyererei
ENSGAGG00000006956	-	76	89.130	ENSPNYG00000013205	-	77	89.130	Pundamilia_nyererei
ENSGAGG00000006956	-	78	89.362	ENSPNAG00000015104	pcbp3	79	89.362	Pygocentrus_nattereri
ENSGAGG00000006956	-	93	82.128	ENSPNAG00000008541	-	77	89.674	Pygocentrus_nattereri
ENSGAGG00000006956	-	78	89.744	ENSRNOG00000001245	Pcbp3	80	89.744	Rattus_norvegicus
ENSGAGG00000006956	-	100	69.259	ENSRBIG00000028177	-	87	73.092	Rhinopithecus_bieti
ENSGAGG00000006956	-	88	81.696	ENSSHAG00000007890	-	88	81.696	Sarcophilus_harrisii
ENSGAGG00000006956	-	87	73.874	ENSSFOG00015007118	-	84	73.874	Scleropages_formosus
ENSGAGG00000006956	-	87	88.095	ENSSFOG00015014706	pcbp3	77	88.095	Scleropages_formosus
ENSGAGG00000006956	-	93	82.278	ENSSFOG00015010205	pcbp3	88	82.278	Scleropages_formosus
ENSGAGG00000006956	-	76	90.217	ENSSMAG00000011929	pcbp3	76	90.217	Scophthalmus_maximus
ENSGAGG00000006956	-	76	90.270	ENSSMAG00000003135	-	77	90.270	Scophthalmus_maximus
ENSGAGG00000006956	-	93	84.649	ENSSDUG00000011608	pcbp3	85	84.649	Seriola_dumerili
ENSGAGG00000006956	-	96	79.915	ENSSDUG00000008502	-	91	84.977	Seriola_dumerili
ENSGAGG00000006956	-	76	87.368	ENSSLDG00000020161	-	76	87.368	Seriola_lalandi_dorsalis
ENSGAGG00000006956	-	93	84.649	ENSSLDG00000008518	pcbp3	85	84.649	Seriola_lalandi_dorsalis
ENSGAGG00000006956	-	88	83.412	ENSSPUG00000013214	-	93	79.621	Sphenodon_punctatus
ENSGAGG00000006956	-	63	96.689	ENSSPAG00000004190	-	76	96.689	Stegastes_partitus
ENSGAGG00000006956	-	93	67.965	ENSSPAG00000023341	-	81	69.264	Stegastes_partitus
ENSGAGG00000006956	-	78	90.674	ENSTGUG00000003316	-	79	90.674	Taeniopygia_guttata
ENSGAGG00000006956	-	95	72.766	ENSTGUG00000008158	-	80	84.021	Taeniopygia_guttata
ENSGAGG00000006956	-	95	78.355	ENSTRUG00000013604	pcbp3	96	81.818	Takifugu_rubripes
ENSGAGG00000006956	-	78	81.579	ENSTRUG00000006280	-	79	81.579	Takifugu_rubripes
ENSGAGG00000006956	-	83	88.406	ENSTTRG00000015075	-	86	82.773	Tursiops_truncatus
ENSGAGG00000006956	-	80	79.899	ENSXETG00000010491	pcbp2	57	79.899	Xenopus_tropicalis
ENSGAGG00000006956	-	78	89.231	ENSXETG00000011483	pcbp1	73	89.231	Xenopus_tropicalis
ENSGAGG00000006956	-	86	87.037	ENSXCOG00000020481	pcbp3	76	87.037	Xiphophorus_couchianus
ENSGAGG00000006956	-	86	88.263	ENSXMAG00000008175	pcbp3	76	88.263	Xiphophorus_maculatus
ENSGAGG00000006956	-	77	90.270	ENSXMAG00000028711	-	76	87.368	Xiphophorus_maculatus