EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000006960 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 13408 bases
Position: chrPPEB01011887.1:17473-30880
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	1	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	2	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	3	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	4	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	5	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	6	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	7	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	8	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	9	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	10	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	11	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	12	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	13	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	14	15
ENSGAGP00000008814	zf-C2H2	PF00096.26	5.3e-90	15	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	1	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	2	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	3	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	4	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	5	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	6	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	7	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	8	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	9	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	10	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	11	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	12	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	13	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	14	15
ENSGAGP00000008799	zf-C2H2	PF00096.26	1.6e-89	15	15
ENSGAGP00000008833	zf-C2H2	PF00096.26	4.6e-50	1	8
ENSGAGP00000008833	zf-C2H2	PF00096.26	4.6e-50	2	8
ENSGAGP00000008833	zf-C2H2	PF00096.26	4.6e-50	3	8
ENSGAGP00000008833	zf-C2H2	PF00096.26	4.6e-50	4	8
ENSGAGP00000008833	zf-C2H2	PF00096.26	4.6e-50	5	8
ENSGAGP00000008833	zf-C2H2	PF00096.26	4.6e-50	6	8
ENSGAGP00000008833	zf-C2H2	PF00096.26	4.6e-50	7	8
ENSGAGP00000008833	zf-C2H2	PF00096.26	4.6e-50	8	8
ENSGAGP00000008814	zf-met	PF12874.7	4.6e-17	1	3
ENSGAGP00000008814	zf-met	PF12874.7	4.6e-17	2	3
ENSGAGP00000008814	zf-met	PF12874.7	4.6e-17	3	3
ENSGAGP00000008799	zf-met	PF12874.7	9.6e-17	1	3
ENSGAGP00000008799	zf-met	PF12874.7	9.6e-17	2	3
ENSGAGP00000008799	zf-met	PF12874.7	9.6e-17	3	3
ENSGAGP00000008833	zf-met	PF12874.7	1.6e-10	1	2
ENSGAGP00000008833	zf-met	PF12874.7	1.6e-10	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000010115	-	1809	-	ENSGAGP00000008799	602 (aa)	-	-
ENSGAGT00000010134	-	1701	-	ENSGAGP00000008814	566 (aa)	-	-
ENSGAGT00000010159	-	1365	-	ENSGAGP00000008833	454 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000006960's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000006960's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000006960	-	97	68.788	ENSGAGG00000006683	-	94	72.561
ENSGAGG00000006960	-	86	68.056	ENSGAGG00000015232	-	80	68.056
ENSGAGG00000006960	-	86	52.232	ENSGAGG00000011366	-	99	50.985
ENSGAGG00000006960	-	78	55.405	ENSGAGG00000011399	-	84	54.913
ENSGAGG00000006960	-	97	69.231	ENSGAGG00000012452	-	93	69.231
ENSGAGG00000006960	-	81	56.538	ENSGAGG00000001387	-	67	56.538
ENSGAGG00000006960	-	86	60.142	ENSGAGG00000006323	-	94	60.142
ENSGAGG00000006960	-	98	61.034	ENSGAGG00000002828	-	88	61.034
ENSGAGG00000006960	-	78	51.557	ENSGAGG00000020168	-	71	54.717
ENSGAGG00000006960	-	78	67.943	ENSGAGG00000000971	-	92	67.943
ENSGAGG00000006960	-	84	72.188	ENSGAGG00000007230	-	96	71.329
ENSGAGG00000006960	-	74	39.592	ENSGAGG00000021631	ZNF652	51	39.592
ENSGAGG00000006960	-	98	58.020	ENSGAGG00000009272	-	97	61.233
ENSGAGG00000006960	-	89	72.426	ENSGAGG00000017986	-	97	67.183
ENSGAGG00000006960	-	84	33.416	ENSGAGG00000020362	PRDM5	86	39.394
ENSGAGG00000006960	-	98	58.842	ENSGAGG00000001645	-	91	64.754
ENSGAGG00000006960	-	98	60.588	ENSGAGG00000002179	-	99	62.369
ENSGAGG00000006960	-	84	74.806	ENSGAGG00000004740	-	94	69.375
ENSGAGG00000006960	-	78	51.282	ENSGAGG00000013021	-	98	51.282
ENSGAGG00000006960	-	98	66.667	ENSGAGG00000011574	-	98	66.667
ENSGAGG00000006960	-	78	61.959	ENSGAGG00000001469	-	95	59.016
ENSGAGG00000006960	-	80	40.927	ENSGAGG00000003095	ZNF865	80	41.553
ENSGAGG00000006960	-	91	60.515	ENSGAGG00000006846	-	98	60.515
ENSGAGG00000006960	-	79	57.439	ENSGAGG00000018885	-	83	50.917
ENSGAGG00000006960	-	79	58.921	ENSGAGG00000005805	-	85	56.977
ENSGAGG00000006960	-	100	63.501	ENSGAGG00000002214	-	98	63.241
ENSGAGG00000006960	-	86	57.823	ENSGAGG00000006848	-	69	54.589
ENSGAGG00000006960	-	98	70.763	ENSGAGG00000008773	-	98	67.100
ENSGAGG00000006960	-	84	53.506	ENSGAGG00000018445	-	89	53.506
ENSGAGG00000006960	-	98	72.851	ENSGAGG00000020594	-	99	72.851
ENSGAGG00000006960	-	80	40.291	ENSGAGG00000022571	ZNF319	96	40.291
ENSGAGG00000006960	-	98	66.909	ENSGAGG00000014356	-	95	65.282
ENSGAGG00000006960	-	77	47.419	ENSGAGG00000017094	-	53	49.180
ENSGAGG00000006960	-	98	70.293	ENSGAGG00000019349	-	99	70.293
ENSGAGG00000006960	-	85	48.214	ENSGAGG00000003883	ZNF236	70	48.214
ENSGAGG00000006960	-	78	52.800	ENSGAGG00000017640	-	62	52.800
ENSGAGG00000006960	-	82	63.473	ENSGAGG00000010492	-	83	63.473
ENSGAGG00000006960	-	82	67.219	ENSGAGG00000015451	-	88	70.866
ENSGAGG00000006960	-	87	49.573	ENSGAGG00000005331	-	99	49.573
ENSGAGG00000006960	-	85	86.486	ENSGAGG00000010324	-	97	64.224
ENSGAGG00000006960	-	86	70.196	ENSGAGG00000009739	-	99	70.196
ENSGAGG00000006960	-	83	45.963	ENSGAGG00000021327	GFI1B	51	45.963
ENSGAGG00000006960	-	78	54.167	ENSGAGG00000004926	-	96	54.167
ENSGAGG00000006960	-	84	68.199	ENSGAGG00000013851	-	87	68.199
ENSGAGG00000006960	-	98	57.655	ENSGAGG00000011487	-	99	56.818
ENSGAGG00000006960	-	80	39.462	ENSGAGG00000025218	ZBTB41	60	39.462
ENSGAGG00000006960	-	96	66.298	ENSGAGG00000016529	-	95	66.298
ENSGAGG00000006960	-	83	75.207	ENSGAGG00000014389	-	96	75.207
ENSGAGG00000006960	-	98	71.329	ENSGAGG00000010833	-	90	87.097
ENSGAGG00000006960	-	86	85.714	ENSGAGG00000020134	-	73	85.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000006960	-	98	51.494	ENSAPLG00000012660	-	97	56.098	Anas_platyrhynchos
ENSGAGG00000006960	-	82	53.261	ENSAMXG00000037143	-	93	57.741	Astyanax_mexicanus
ENSGAGG00000006960	-	78	61.409	ENSAMXG00000011804	-	92	61.409	Astyanax_mexicanus
ENSGAGG00000006960	-	93	55.956	ENSAMXG00000032619	-	97	55.956	Astyanax_mexicanus
ENSGAGG00000006960	-	73	65.625	ENSAMXG00000039881	-	71	65.625	Astyanax_mexicanus
ENSGAGG00000006960	-	76	60.086	ENSAMXG00000026142	-	87	60.086	Astyanax_mexicanus
ENSGAGG00000006960	-	80	52.976	ENSAMXG00000026144	-	92	59.330	Astyanax_mexicanus
ENSGAGG00000006960	-	79	54.211	ENSAMXG00000019489	-	93	54.211	Astyanax_mexicanus
ENSGAGG00000006960	-	79	56.538	ENSAMXG00000003002	-	97	56.538	Astyanax_mexicanus
ENSGAGG00000006960	-	78	61.458	ENSAMXG00000035690	-	89	60.656	Astyanax_mexicanus
ENSGAGG00000006960	-	79	55.769	ENSAMXG00000037326	-	96	55.769	Astyanax_mexicanus
ENSGAGG00000006960	-	80	59.801	ENSAMXG00000041725	-	93	59.801	Astyanax_mexicanus
ENSGAGG00000006960	-	78	60.677	ENSAMXG00000031489	-	91	61.765	Astyanax_mexicanus
ENSGAGG00000006960	-	82	60.588	ENSAMXG00000029878	-	99	60.588	Astyanax_mexicanus
ENSGAGG00000006960	-	84	57.766	ENSAMXG00000040212	-	90	57.493	Astyanax_mexicanus
ENSGAGG00000006960	-	77	55.224	ENSAMXG00000033124	-	64	55.224	Astyanax_mexicanus
ENSGAGG00000006960	-	79	54.734	ENSAMXG00000043978	-	91	54.733	Astyanax_mexicanus
ENSGAGG00000006960	-	77	63.362	ENSAMXG00000037703	-	90	62.121	Astyanax_mexicanus
ENSGAGG00000006960	-	78	57.231	ENSAMXG00000001626	-	96	57.231	Astyanax_mexicanus
ENSGAGG00000006960	-	88	56.220	ENSAMXG00000039752	-	97	56.220	Astyanax_mexicanus
ENSGAGG00000006960	-	78	64.039	ENSAMXG00000025455	-	98	64.039	Astyanax_mexicanus
ENSGAGG00000006960	-	79	57.100	ENSAMXG00000038453	-	87	60.088	Astyanax_mexicanus
ENSGAGG00000006960	-	83	56.637	ENSAMXG00000004610	-	96	57.604	Astyanax_mexicanus
ENSGAGG00000006960	-	87	59.545	ENSCPBG00000002014	-	55	59.545	Chrysemys_picta_bellii
ENSGAGG00000006960	-	85	68.571	ENSEASG00005020341	-	94	68.571	Equus_asinus_asinus
ENSGAGG00000006960	-	80	57.243	ENSECAG00000039445	-	93	59.170	Equus_caballus
ENSGAGG00000006960	-	85	68.571	ENSECAG00000017293	-	94	68.571	Equus_caballus
ENSGAGG00000006960	-	80	59.036	ENSIPUG00000015400	-	97	59.036	Ictalurus_punctatus
ENSGAGG00000006960	-	83	57.831	ENSIPUG00000015177	-	81	57.831	Ictalurus_punctatus
ENSGAGG00000006960	-	95	62.500	ENSMPUG00000008437	-	96	62.500	Mustela_putorius_furo
ENSGAGG00000006960	-	98	57.857	ENSPTIG00000009259	-	97	62.785	Panthera_tigris_altaica
ENSGAGG00000006960	-	78	60.996	ENSPSIG00000016247	-	56	60.996	Pelodiscus_sinensis
ENSGAGG00000006960	-	84	57.480	ENSPNAG00000012366	-	86	59.336	Pygocentrus_nattereri
ENSGAGG00000006960	-	76	63.525	ENSPNAG00000016045	-	74	63.525	Pygocentrus_nattereri
ENSGAGG00000006960	-	79	56.863	ENSPNAG00000021942	-	96	56.863	Pygocentrus_nattereri
ENSGAGG00000006960	-	81	63.666	ENSPNAG00000018471	-	85	63.666	Pygocentrus_nattereri
ENSGAGG00000006960	-	77	52.727	ENSPNAG00000029386	-	83	52.727	Pygocentrus_nattereri
ENSGAGG00000006960	-	78	62.332	ENSPNAG00000016025	-	95	62.332	Pygocentrus_nattereri
ENSGAGG00000006960	-	88	57.881	ENSPNAG00000017479	-	90	57.881	Pygocentrus_nattereri
ENSGAGG00000006960	-	80	61.458	ENSPNAG00000008653	-	96	66.423	Pygocentrus_nattereri
ENSGAGG00000006960	-	82	58.101	ENSPNAG00000028765	-	94	58.101	Pygocentrus_nattereri
ENSGAGG00000006960	-	82	58.303	ENSPNAG00000002287	-	99	58.303	Pygocentrus_nattereri
ENSGAGG00000006960	-	82	61.603	ENSPNAG00000012138	-	93	61.603	Pygocentrus_nattereri
ENSGAGG00000006960	-	84	59.659	ENSPNAG00000017455	-	88	59.659	Pygocentrus_nattereri
ENSGAGG00000006960	-	84	59.686	ENSPNAG00000005914	-	76	59.686	Pygocentrus_nattereri
ENSGAGG00000006960	-	79	55.556	ENSPNAG00000000783	-	90	55.642	Pygocentrus_nattereri
ENSGAGG00000006960	-	82	57.529	ENSPNAG00000024704	-	94	57.529	Pygocentrus_nattereri
ENSGAGG00000006960	-	86	63.333	ENSPNAG00000018437	-	78	63.333	Pygocentrus_nattereri
ENSGAGG00000006960	-	84	61.067	ENSPNAG00000003526	-	82	63.710	Pygocentrus_nattereri
ENSGAGG00000006960	-	84	61.765	ENSPNAG00000007072	-	99	61.765	Pygocentrus_nattereri
ENSGAGG00000006960	-	86	59.375	ENSPNAG00000003919	-	99	59.375	Pygocentrus_nattereri
ENSGAGG00000006960	-	96	61.224	ENSUAMG00000027384	-	99	61.224	Ursus_americanus
ENSGAGG00000006960	-	83	57.944	ENSUAMG00000027415	-	91	58.462	Ursus_americanus
ENSGAGG00000006960	-	80	62.353	ENSVPAG00000002698	-	100	61.453	Vicugna_pacos