EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000007840 (Gene tree)
Gene ID: -
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 104944 bases
Position: chrPPEB01003951.1:69179-174122
Accession: 9757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000009998	R3H	PF01424.22	2.3e-11	1	1
ENSGAGP00000009985	R3H	PF01424.22	2.4e-11	1	1
ENSGAGP00000009977	R3H	PF01424.22	2.5e-11	1	1
ENSGAGP00000009981	R3H	PF01424.22	2.6e-11	1	1
ENSGAGP00000009994	R3H	PF01424.22	2.8e-11	1	1
ENSGAGP00000009989	R3H	PF01424.22	4.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000011473	R3HDM1-205	4051	-	ENSGAGP00000009994	1111 (aa)	-	-
ENSGAGT00000011455	R3HDM1-201	4253	-	ENSGAGP00000009977	1120 (aa)	-	-
ENSGAGT00000011463	R3HDM1-203	4145	-	ENSGAGP00000009985	1084 (aa)	-	-
ENSGAGT00000011467	R3HDM1-204	4120	-	ENSGAGP00000009989	1134 (aa)	-	-
ENSGAGT00000011478	R3HDM1-206	3928	-	ENSGAGP00000009998	1070 (aa)	-	-
ENSGAGT00000011459	R3HDM1-202	4183	-	ENSGAGP00000009981	1155 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000007840's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000007840's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000007840	R3HDM1	79	69.966	ENSGAGG00000017797	R3HDM2	96	59.950
ENSGAGG00000007840	R3HDM1	68	56.322	ENSGAGG00000021582	ARPP21	96	54.502

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000007840	R3HDM1	100	78.552	ENSG00000048991	R3HDM1	95	89.189	Homo_sapiens
ENSGAGG00000007840	R3HDM1	84	61.029	ENSAPOG00000020850	r3hdm1	84	65.217	Acanthochromis_polyacanthus
ENSGAGG00000007840	R3HDM1	100	77.758	ENSAMEG00000014886	R3HDM1	100	78.300	Ailuropoda_melanoleuca
ENSGAGG00000007840	R3HDM1	84	61.029	ENSAOCG00000005192	r3hdm1	91	61.029	Amphiprion_ocellaris
ENSGAGG00000007840	R3HDM1	76	64.907	ENSAPEG00000016108	r3hdm1	87	64.907	Amphiprion_percula
ENSGAGG00000007840	R3HDM1	75	66.881	ENSATEG00000000232	r3hdm1	86	66.881	Anabas_testudineus
ENSGAGG00000007840	R3HDM1	100	86.953	ENSAPLG00000015231	R3HDM1	100	87.226	Anas_platyrhynchos
ENSGAGG00000007840	R3HDM1	100	84.331	ENSACAG00000001676	R3HDM1	100	84.947	Anolis_carolinensis
ENSGAGG00000007840	R3HDM1	96	83.459	ENSANAG00000035334	R3HDM1	99	83.380	Aotus_nancymaae
ENSGAGG00000007840	R3HDM1	76	64.286	ENSACLG00000027282	r3hdm1	99	45.898	Astatotilapia_calliptera
ENSGAGG00000007840	R3HDM1	96	69.927	ENSAMXG00000012861	R3HDM1	100	62.113	Astyanax_mexicanus
ENSGAGG00000007840	R3HDM1	100	56.080	ENSAMXG00000003536	r3hdm1	94	68.449	Astyanax_mexicanus
ENSGAGG00000007840	R3HDM1	64	39.541	ENSAMXG00000020587	arpp21	88	40.708	Astyanax_mexicanus
ENSGAGG00000007840	R3HDM1	100	77.944	ENSBTAG00000013302	R3HDM1	100	78.383	Bos_taurus
ENSGAGG00000007840	R3HDM1	93	86.435	ENSCJAG00000011718	R3HDM1	99	83.099	Callithrix_jacchus
ENSGAGG00000007840	R3HDM1	100	78.029	ENSCAFG00000005075	R3HDM1	100	78.571	Canis_familiaris
ENSGAGG00000007840	R3HDM1	96	83.709	ENSCAFG00020016119	R3HDM1	99	81.365	Canis_lupus_dingo
ENSGAGG00000007840	R3HDM1	100	78.182	ENSCHIG00000020851	R3HDM1	100	78.727	Capra_hircus
ENSGAGG00000007840	R3HDM1	96	80.451	ENSCPOG00000012784	R3HDM1	100	82.119	Cavia_porcellus
ENSGAGG00000007840	R3HDM1	93	86.120	ENSCCAG00000027199	R3HDM1	99	82.254	Cebus_capucinus
ENSGAGG00000007840	R3HDM1	99	83.883	ENSCATG00000023642	R3HDM1	99	83.099	Cercocebus_atys
ENSGAGG00000007840	R3HDM1	96	81.955	ENSCLAG00000007962	R3HDM1	100	83.885	Chinchilla_lanigera
ENSGAGG00000007840	R3HDM1	96	83.208	ENSCSAG00000016356	R3HDM1	100	78.265	Chlorocebus_sabaeus
ENSGAGG00000007840	R3HDM1	79	82.443	ENSCHOG00000013638	R3HDM1	77	82.443	Choloepus_hoffmanni
ENSGAGG00000007840	R3HDM1	92	94.686	ENSCPBG00000009645	R3HDM1	100	98.155	Chrysemys_picta_bellii
ENSGAGG00000007840	R3HDM1	100	78.119	ENSCANG00000034748	R3HDM1	99	83.662	Colobus_angolensis_palliatus
ENSGAGG00000007840	R3HDM1	96	82.793	ENSCGRG00001012357	R3hdm1	97	76.532	Cricetulus_griseus_chok1gshd
ENSGAGG00000007840	R3HDM1	96	82.793	ENSCGRG00000012080	R3hdm1	95	85.615	Cricetulus_griseus_crigri
ENSGAGG00000007840	R3HDM1	81	61.214	ENSCSEG00000008944	r3hdm1	88	63.174	Cynoglossus_semilaevis
ENSGAGG00000007840	R3HDM1	84	59.169	ENSCVAG00000007582	r3hdm1	85	65.798	Cyprinodon_variegatus
ENSGAGG00000007840	R3HDM1	63	39.136	ENSDARG00000061081	arpp21	92	39.609	Danio_rerio
ENSGAGG00000007840	R3HDM1	100	74.526	ENSDNOG00000000771	R3HDM1	100	75.068	Dasypus_novemcinctus
ENSGAGG00000007840	R3HDM1	100	70.417	ENSETEG00000013606	R3HDM1	100	71.325	Echinops_telfairi
ENSGAGG00000007840	R3HDM1	56	50.272	ENSEBUG00000014746	arpp21	97	43.485	Eptatretus_burgeri
ENSGAGG00000007840	R3HDM1	100	78.312	ENSEASG00005007392	R3HDM1	100	78.857	Equus_asinus_asinus
ENSGAGG00000007840	R3HDM1	100	78.170	ENSECAG00000019114	R3HDM1	100	78.714	Equus_caballus
ENSGAGG00000007840	R3HDM1	86	73.752	ENSEEUG00000012589	R3HDM1	86	73.937	Erinaceus_europaeus
ENSGAGG00000007840	R3HDM1	89	65.964	ENSELUG00000014413	r3hdm1	100	53.535	Esox_lucius
ENSGAGG00000007840	R3HDM1	82	71.117	ENSELUG00000004909	R3HDM1	90	68.142	Esox_lucius
ENSGAGG00000007840	R3HDM1	100	78.332	ENSFCAG00000027113	R3HDM1	100	78.876	Felis_catus
ENSGAGG00000007840	R3HDM1	75	81.604	ENSFALG00000013731	R3HDM1	85	87.750	Ficedula_albicollis
ENSGAGG00000007840	R3HDM1	96	83.208	ENSFDAG00000016478	R3HDM1	100	84.922	Fukomys_damarensis
ENSGAGG00000007840	R3HDM1	84	60.784	ENSFHEG00000018713	r3hdm1	91	60.784	Fundulus_heteroclitus
ENSGAGG00000007840	R3HDM1	54	77.323	ENSGMOG00000006042	-	81	63.704	Gadus_morhua
ENSGAGG00000007840	R3HDM1	89	83.662	ENSGALG00000012246	R3HDM1	100	85.437	Gallus_gallus
ENSGAGG00000007840	R3HDM1	83	46.821	ENSGAFG00000006203	r3hdm1	94	50.546	Gambusia_affinis
ENSGAGG00000007840	R3HDM1	83	65.143	ENSGACG00000014925	r3hdm1	94	65.143	Gasterosteus_aculeatus
ENSGAGG00000007840	R3HDM1	100	78.733	ENSGGOG00000008156	R3HDM1	99	83.662	Gorilla_gorilla
ENSGAGG00000007840	R3HDM1	96	82.206	ENSHGLG00000015718	R3HDM1	100	83.664	Heterocephalus_glaber_female
ENSGAGG00000007840	R3HDM1	96	81.955	ENSHGLG00100003184	-	100	83.664	Heterocephalus_glaber_male
ENSGAGG00000007840	R3HDM1	100	57.389	ENSHGLG00100015374	-	100	57.570	Heterocephalus_glaber_male
ENSGAGG00000007840	R3HDM1	75	63.871	ENSHCOG00000013366	r3hdm1	85	64.839	Hippocampus_comes
ENSGAGG00000007840	R3HDM1	76	72.727	ENSIPUG00000001676	R3HDM1	99	66.029	Ictalurus_punctatus
ENSGAGG00000007840	R3HDM1	56	41.471	ENSIPUG00000020552	arpp21	86	37.237	Ictalurus_punctatus
ENSGAGG00000007840	R3HDM1	87	65.896	ENSIPUG00000013629	r3hdm1	95	69.062	Ictalurus_punctatus
ENSGAGG00000007840	R3HDM1	100	77.868	ENSSTOG00000007572	R3HDM1	100	83.885	Ictidomys_tridecemlineatus
ENSGAGG00000007840	R3HDM1	100	74.576	ENSLACG00000005334	R3HDM1	99	78.185	Latimeria_chalumnae
ENSGAGG00000007840	R3HDM1	95	75.750	ENSLOCG00000001641	r3hdm1	100	68.582	Lepisosteus_oculatus
ENSGAGG00000007840	R3HDM1	100	77.671	ENSLAFG00000009065	R3HDM1	100	78.196	Loxodonta_africana
ENSGAGG00000007840	R3HDM1	100	78.281	ENSMFAG00000030331	R3HDM1	100	83.824	Macaca_fascicularis
ENSGAGG00000007840	R3HDM1	100	78.100	ENSMMUG00000009844	R3HDM1	99	83.662	Macaca_mulatta
ENSGAGG00000007840	R3HDM1	100	78.190	ENSMNEG00000027793	R3HDM1	100	83.824	Macaca_nemestrina
ENSGAGG00000007840	R3HDM1	100	78.281	ENSMLEG00000043189	R3HDM1	99	83.662	Mandrillus_leucophaeus
ENSGAGG00000007840	R3HDM1	84	60.294	ENSMAMG00000004532	r3hdm1	85	66.774	Mastacembelus_armatus
ENSGAGG00000007840	R3HDM1	84	59.804	ENSMZEG00005003157	r3hdm1	91	59.804	Maylandia_zebra
ENSGAGG00000007840	R3HDM1	100	86.642	ENSMGAG00000012461	R3HDM1	100	87.100	Meleagris_gallopavo
ENSGAGG00000007840	R3HDM1	96	83.292	ENSMAUG00000010315	R3hdm1	95	85.383	Mesocricetus_auratus
ENSGAGG00000007840	R3HDM1	100	76.826	ENSMICG00000005900	-	99	82.535	Microcebus_murinus
ENSGAGG00000007840	R3HDM1	84	82.303	ENSMICG00000042655	-	99	82.254	Microcebus_murinus
ENSGAGG00000007840	R3HDM1	50	81.181	ENSMOCG00000019833	-	95	84.687	Microtus_ochrogaster
ENSGAGG00000007840	R3HDM1	90	78.887	ENSMODG00000000923	R3HDM1	97	79.655	Monodelphis_domestica
ENSGAGG00000007840	R3HDM1	96	57.303	ENSMALG00000009000	r3hdm1	92	60.341	Monopterus_albus
ENSGAGG00000007840	R3HDM1	96	83.042	MGP_CAROLIEiJ_G0014543	R3hdm1	97	82.759	Mus_caroli
ENSGAGG00000007840	R3HDM1	96	83.042	ENSMUSG00000056211	R3hdm1	97	82.759	Mus_musculus
ENSGAGG00000007840	R3HDM1	96	82.793	MGP_PahariEiJ_G0027779	R3hdm1	95	84.919	Mus_pahari
ENSGAGG00000007840	R3HDM1	96	83.042	MGP_SPRETEiJ_G0015350	R3hdm1	97	82.759	Mus_spretus
ENSGAGG00000007840	R3HDM1	100	78.009	ENSMPUG00000002412	R3HDM1	100	78.552	Mustela_putorius_furo
ENSGAGG00000007840	R3HDM1	100	77.006	ENSMLUG00000013824	R3HDM1	100	77.277	Myotis_lucifugus
ENSGAGG00000007840	R3HDM1	100	78.462	ENSNLEG00000008622	R3HDM1	99	83.380	Nomascus_leucogenys
ENSGAGG00000007840	R3HDM1	89	69.959	ENSMEUG00000011784	R3HDM1	99	70.782	Notamacropus_eugenii
ENSGAGG00000007840	R3HDM1	96	82.707	ENSODEG00000008607	R3HDM1	100	83.664	Octodon_degus
ENSGAGG00000007840	R3HDM1	94	47.928	ENSONIG00000012017	r3hdm1	99	47.520	Oreochromis_niloticus
ENSGAGG00000007840	R3HDM1	100	80.801	ENSOANG00000007987	R3HDM1	100	81.074	Ornithorhynchus_anatinus
ENSGAGG00000007840	R3HDM1	84	82.456	ENSOCUG00000017366	R3HDM1	98	77.665	Oryctolagus_cuniculus
ENSGAGG00000007840	R3HDM1	84	58.578	ENSORLG00000004297	r3hdm1	86	65.161	Oryzias_latipes
ENSGAGG00000007840	R3HDM1	84	58.477	ENSORLG00015017355	r3hdm1	85	65.484	Oryzias_latipes_hsok
ENSGAGG00000007840	R3HDM1	100	77.516	ENSOGAG00000003136	R3HDM1	100	78.261	Otolemur_garnettii
ENSGAGG00000007840	R3HDM1	100	78.071	ENSOARG00000010788	R3HDM1	100	78.617	Ovis_aries
ENSGAGG00000007840	R3HDM1	100	78.410	ENSPPAG00000027858	R3HDM1	99	83.662	Pan_paniscus
ENSGAGG00000007840	R3HDM1	100	78.150	ENSPPRG00000002626	R3HDM1	99	83.099	Panthera_pardus
ENSGAGG00000007840	R3HDM1	100	78.241	ENSPTIG00000016581	R3HDM1	99	83.380	Panthera_tigris_altaica
ENSGAGG00000007840	R3HDM1	100	78.320	ENSPTRG00000012494	R3HDM1	99	83.662	Pan_troglodytes
ENSGAGG00000007840	R3HDM1	100	78.281	ENSPANG00000026448	R3HDM1	99	83.662	Papio_anubis
ENSGAGG00000007840	R3HDM1	100	63.333	ENSPKIG00000004328	r3hdm1	91	75.556	Paramormyrops_kingsleyae
ENSGAGG00000007840	R3HDM1	100	91.773	ENSPSIG00000012915	R3HDM1	100	91.956	Pelodiscus_sinensis
ENSGAGG00000007840	R3HDM1	96	82.793	ENSPEMG00000015187	R3hdm1	95	85.383	Peromyscus_maniculatus_bairdii
ENSGAGG00000007840	R3HDM1	84	59.409	ENSPMAG00000003369	-	92	59.249	Petromyzon_marinus
ENSGAGG00000007840	R3HDM1	100	82.203	ENSPCIG00000002491	R3HDM1	100	82.439	Phascolarctos_cinereus
ENSGAGG00000007840	R3HDM1	82	60.925	ENSPFOG00000015036	r3hdm1	89	60.925	Poecilia_formosa
ENSGAGG00000007840	R3HDM1	83	47.219	ENSPLAG00000018042	r3hdm1	94	50.164	Poecilia_latipinna
ENSGAGG00000007840	R3HDM1	83	46.988	ENSPMEG00000023947	r3hdm1	94	49.892	Poecilia_mexicana
ENSGAGG00000007840	R3HDM1	79	64.326	ENSPREG00000007902	r3hdm1	93	59.292	Poecilia_reticulata
ENSGAGG00000007840	R3HDM1	100	77.667	ENSPPYG00000012815	R3HDM1	100	77.939	Pongo_abelii
ENSGAGG00000007840	R3HDM1	94	79.635	ENSPCAG00000006208	R3HDM1	93	79.635	Procavia_capensis
ENSGAGG00000007840	R3HDM1	100	75.000	ENSPCOG00000012698	R3HDM1	100	75.361	Propithecus_coquereli
ENSGAGG00000007840	R3HDM1	100	70.099	ENSPVAG00000006098	R3HDM1	100	70.370	Pteropus_vampyrus
ENSGAGG00000007840	R3HDM1	67	40.339	ENSPNAG00000004162	arpp21	91	50.862	Pygocentrus_nattereri
ENSGAGG00000007840	R3HDM1	84	75.478	ENSPNAG00000005436	R3HDM1	99	75.884	Pygocentrus_nattereri
ENSGAGG00000007840	R3HDM1	93	70.350	ENSPNAG00000013952	r3hdm1	95	70.350	Pygocentrus_nattereri
ENSGAGG00000007840	R3HDM1	96	82.544	ENSRNOG00000004099	R3hdm1	100	75.197	Rattus_norvegicus
ENSGAGG00000007840	R3HDM1	100	77.236	ENSRBIG00000033317	R3HDM1	100	89.011	Rhinopithecus_bieti
ENSGAGG00000007840	R3HDM1	100	77.738	ENSRROG00000034534	R3HDM1	99	83.944	Rhinopithecus_roxellana
ENSGAGG00000007840	R3HDM1	93	86.435	ENSSBOG00000020389	R3HDM1	99	82.817	Saimiri_boliviensis_boliviensis
ENSGAGG00000007840	R3HDM1	100	81.478	ENSSHAG00000016999	R3HDM1	100	82.026	Sarcophilus_harrisii
ENSGAGG00000007840	R3HDM1	100	58.177	ENSSFOG00015019851	-	97	62.298	Scleropages_formosus
ENSGAGG00000007840	R3HDM1	96	70.123	ENSSFOG00015014134	r3hdm1	100	70.531	Scleropages_formosus
ENSGAGG00000007840	R3HDM1	86	66.234	ENSSMAG00000001669	r3hdm1	86	66.234	Scophthalmus_maximus
ENSGAGG00000007840	R3HDM1	88	47.098	ENSSDUG00000010749	r3hdm1	85	66.879	Seriola_dumerili
ENSGAGG00000007840	R3HDM1	99	46.620	ENSSLDG00000004499	r3hdm1	90	60.976	Seriola_lalandi_dorsalis
ENSGAGG00000007840	R3HDM1	70	72.093	ENSSARG00000000352	-	69	72.093	Sorex_araneus
ENSGAGG00000007840	R3HDM1	100	88.381	ENSSPUG00000004167	R3HDM1	100	88.564	Sphenodon_punctatus
ENSGAGG00000007840	R3HDM1	84	61.029	ENSSPAG00000004648	r3hdm1	91	61.029	Stegastes_partitus
ENSGAGG00000007840	R3HDM1	100	78.060	ENSSSCG00000015692	R3HDM1	99	79.718	Sus_scrofa
ENSGAGG00000007840	R3HDM1	96	87.970	ENSTGUG00000011750	R3HDM1	100	80.657	Taeniopygia_guttata
ENSGAGG00000007840	R3HDM1	76	62.733	ENSTRUG00000011654	r3hdm1	85	62.733	Takifugu_rubripes
ENSGAGG00000007840	R3HDM1	86	46.389	ENSTNIG00000010362	r3hdm1	99	46.334	Tetraodon_nigroviridis
ENSGAGG00000007840	R3HDM1	100	72.818	ENSTTRG00000003935	R3HDM1	100	73.364	Tursiops_truncatus
ENSGAGG00000007840	R3HDM1	70	78.581	ENSUAMG00000024806	R3HDM1	99	81.919	Ursus_americanus
ENSGAGG00000007840	R3HDM1	100	74.024	ENSUMAG00000005552	R3HDM1	99	83.380	Ursus_maritimus
ENSGAGG00000007840	R3HDM1	93	74.689	ENSVPAG00000007333	R3HDM1	85	84.672	Vicugna_pacos
ENSGAGG00000007840	R3HDM1	96	83.709	ENSVVUG00000006457	R3HDM1	99	83.380	Vulpes_vulpes
ENSGAGG00000007840	R3HDM1	89	69.898	ENSXETG00000019330	r3hdm1	100	70.000	Xenopus_tropicalis
ENSGAGG00000007840	R3HDM1	63	66.667	ENSXCOG00000017448	r3hdm1	82	66.667	Xiphophorus_couchianus
ENSGAGG00000007840	R3HDM1	82	61.735	ENSXMAG00000007885	r3hdm1	89	61.735	Xiphophorus_maculatus