EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000008553 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: LARK|RBM4A|ZCCHC21|ZCRB3A
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 11641 bases
Position: chrPPEB01002501.1:199584-211224
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000011046	zf-CCHC	PF00098.23	2.3e-07	1	1
ENSGAGP00000011046	RRM_5	PF13893.6	1.6e-08	1	2
ENSGAGP00000011046	RRM_5	PF13893.6	1.6e-08	2	2
ENSGAGP00000011046	RRM_1	PF00076.22	7e-33	1	2
ENSGAGP00000011046	RRM_1	PF00076.22	7e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000012648	-	1224	-	ENSGAGP00000011046	374 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000008553's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000008553's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000008553	-	100	96.791	ENSGAGG00000001387	-	100	96.791

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000008553	-	100	74.607	ENSG00000173933	RBM4	100	96.341	Homo_sapiens
ENSGAGG00000008553	-	100	74.211	ENSG00000173914	RBM4B	97	96.403	Homo_sapiens
ENSGAGG00000008553	-	99	52.219	ENSG00000248643	RBM14-RBM4	100	52.604	Homo_sapiens
ENSGAGG00000008553	-	100	73.890	ENSAMEG00000010914	RBM4	100	75.521	Ailuropoda_melanoleuca
ENSGAGG00000008553	-	100	75.526	ENSAMEG00000010906	RBM4B	100	75.591	Ailuropoda_melanoleuca
ENSGAGG00000008553	-	100	73.947	ENSANAG00000023478	RBM4B	97	96.403	Aotus_nancymaae
ENSGAGG00000008553	-	100	75.000	ENSBTAG00000000423	RBM4B	100	75.066	Bos_taurus
ENSGAGG00000008553	-	100	75.591	ENSBTAG00000031688	RBM4	100	76.440	Bos_taurus
ENSGAGG00000008553	-	100	73.947	ENSCJAG00000013666	RBM4B	97	96.403	Callithrix_jacchus
ENSGAGG00000008553	-	100	75.733	ENSCAFG00000012378	RBM4B	100	75.328	Canis_familiaris
ENSGAGG00000008553	-	100	73.890	ENSCAFG00000012388	RBM4	100	75.521	Canis_familiaris
ENSGAGG00000008553	-	100	75.733	ENSCAFG00020015519	RBM4B	100	75.328	Canis_lupus_dingo
ENSGAGG00000008553	-	100	73.890	ENSCAFG00020015515	RBM4	100	75.521	Canis_lupus_dingo
ENSGAGG00000008553	-	100	75.263	ENSCHIG00000008907	RBM4B	100	75.328	Capra_hircus
ENSGAGG00000008553	-	100	75.591	ENSCHIG00000020613	RBM4	100	76.440	Capra_hircus
ENSGAGG00000008553	-	67	61.719	ENSTSYG00000009580	RBM4B	96	61.868	Carlito_syrichta
ENSGAGG00000008553	-	100	74.934	ENSCAPG00000009570	RBM4B	100	75.000	Cavia_aperea
ENSGAGG00000008553	-	100	73.890	ENSCAPG00000016600	RBM4	97	97.101	Cavia_aperea
ENSGAGG00000008553	-	100	73.890	ENSCPOG00000013194	RBM4	97	97.101	Cavia_porcellus
ENSGAGG00000008553	-	100	74.934	ENSCPOG00000013689	RBM4B	100	75.000	Cavia_porcellus
ENSGAGG00000008553	-	53	69.154	ENSCCAG00000023319	-	100	69.154	Cebus_capucinus
ENSGAGG00000008553	-	100	74.211	ENSCCAG00000016501	RBM4B	97	96.403	Cebus_capucinus
ENSGAGG00000008553	-	100	74.211	ENSCATG00000035353	RBM4B	97	96.403	Cercocebus_atys
ENSGAGG00000008553	-	100	74.737	ENSCLAG00000015287	RBM4B	100	74.803	Chinchilla_lanigera
ENSGAGG00000008553	-	100	73.629	ENSCLAG00000014756	RBM4	97	97.101	Chinchilla_lanigera
ENSGAGG00000008553	-	100	74.211	ENSCSAG00000008361	RBM4B	100	75.066	Chlorocebus_sabaeus
ENSGAGG00000008553	-	100	75.263	ENSCHOG00000002892	RBM4B	100	75.328	Choloepus_hoffmanni
ENSGAGG00000008553	-	63	61.224	ENSCHOG00000009753	RBM14-RBM4	100	63.821	Choloepus_hoffmanni
ENSGAGG00000008553	-	100	99.733	ENSCPBG00000023800	-	100	99.733	Chrysemys_picta_bellii
ENSGAGG00000008553	-	100	74.211	ENSCANG00000021868	RBM4B	97	96.403	Colobus_angolensis_palliatus
ENSGAGG00000008553	-	100	73.753	ENSCGRG00001016609	-	97	97.101	Cricetulus_griseus_chok1gshd
ENSGAGG00000008553	-	100	71.579	ENSCGRG00001024693	Rbm4b	100	72.703	Cricetulus_griseus_chok1gshd
ENSGAGG00000008553	-	100	71.579	ENSCGRG00000012112	Rbm4b	100	72.703	Cricetulus_griseus_crigri
ENSGAGG00000008553	-	100	73.753	ENSCGRG00000010183	-	97	97.101	Cricetulus_griseus_crigri
ENSGAGG00000008553	-	100	74.737	ENSDNOG00000019500	-	100	74.541	Dasypus_novemcinctus
ENSGAGG00000008553	-	100	73.947	ENSDNOG00000045639	-	100	73.753	Dasypus_novemcinctus
ENSGAGG00000008553	-	100	73.368	ENSDNOG00000032390	RBM4	100	75.000	Dasypus_novemcinctus
ENSGAGG00000008553	-	100	73.560	ENSDORG00000004538	-	97	95.652	Dipodomys_ordii
ENSGAGG00000008553	-	100	73.936	ENSDORG00000029108	Rbm4b	100	74.607	Dipodomys_ordii
ENSGAGG00000008553	-	63	50.840	ENSETEG00000018142	-	100	51.477	Echinops_telfairi
ENSGAGG00000008553	-	100	75.526	ENSEASG00005005068	RBM4B	100	75.591	Equus_asinus_asinus
ENSGAGG00000008553	-	100	74.541	ENSEASG00005005064	RBM4	100	75.393	Equus_asinus_asinus
ENSGAGG00000008553	-	100	75.263	ENSECAG00000022987	RBM4B	100	75.328	Equus_caballus
ENSGAGG00000008553	-	100	74.541	ENSECAG00000022940	RBM4	100	75.393	Equus_caballus
ENSGAGG00000008553	-	100	73.298	ENSEEUG00000000058	RBM4B	100	74.151	Erinaceus_europaeus
ENSGAGG00000008553	-	100	75.263	ENSFCAG00000007394	RBM4B	97	96.403	Felis_catus
ENSGAGG00000008553	-	100	73.890	ENSFCAG00000029651	RBM4	97	96.377	Felis_catus
ENSGAGG00000008553	-	100	77.540	ENSFALG00000002073	-	100	77.807	Ficedula_albicollis
ENSGAGG00000008553	-	100	75.000	ENSFDAG00000015530	RBM4B	100	75.066	Fukomys_damarensis
ENSGAGG00000008553	-	51	89.683	ENSFDAG00000013661	-	96	89.683	Fukomys_damarensis
ENSGAGG00000008553	-	100	74.413	ENSFDAG00000005447	RBM4	97	97.101	Fukomys_damarensis
ENSGAGG00000008553	-	100	91.979	ENSGALG00000037946	-	100	91.979	Gallus_gallus
ENSGAGG00000008553	-	100	74.211	ENSGGOG00000011698	RBM4B	97	96.403	Gorilla_gorilla
ENSGAGG00000008553	-	100	75.263	ENSHGLG00000016412	-	100	75.328	Heterocephalus_glaber_female
ENSGAGG00000008553	-	79	45.429	ENSHGLG00000000117	-	95	55.789	Heterocephalus_glaber_female
ENSGAGG00000008553	-	100	73.890	ENSHGLG00000009991	RBM4	97	97.101	Heterocephalus_glaber_female
ENSGAGG00000008553	-	100	62.895	ENSHGLG00000002853	-	100	63.255	Heterocephalus_glaber_female
ENSGAGG00000008553	-	95	63.912	ENSHGLG00100020033	-	99	64.286	Heterocephalus_glaber_male
ENSGAGG00000008553	-	100	74.737	ENSHGLG00100003978	-	100	74.803	Heterocephalus_glaber_male
ENSGAGG00000008553	-	100	65.172	ENSHGLG00100003854	RBM4	97	97.101	Heterocephalus_glaber_male
ENSGAGG00000008553	-	100	73.629	ENSSTOG00000022811	RBM4	97	96.377	Ictidomys_tridecemlineatus
ENSGAGG00000008553	-	100	74.737	ENSSTOG00000011226	RBM4B	100	75.066	Ictidomys_tridecemlineatus
ENSGAGG00000008553	-	100	71.200	ENSJJAG00000020870	Rbm4b	100	72.441	Jaculus_jaculus
ENSGAGG00000008553	-	100	74.074	ENSLAFG00000028147	-	100	74.674	Loxodonta_africana
ENSGAGG00000008553	-	100	72.632	ENSLAFG00000002285	RBM4B	100	73.491	Loxodonta_africana
ENSGAGG00000008553	-	100	74.211	ENSMFAG00000033927	RBM4B	97	97.101	Macaca_fascicularis
ENSGAGG00000008553	-	100	74.211	ENSMNEG00000043371	RBM4B	97	96.403	Macaca_nemestrina
ENSGAGG00000008553	-	100	74.211	ENSMLEG00000028563	RBM4B	97	97.101	Mandrillus_leucophaeus
ENSGAGG00000008553	-	100	72.105	ENSMAUG00000017027	Rbm4b	100	72.966	Mesocricetus_auratus
ENSGAGG00000008553	-	100	74.737	ENSMICG00000003820	RBM4B	97	96.403	Microcebus_murinus
ENSGAGG00000008553	-	100	71.842	ENSMOCG00000001835	Rbm4b	100	72.966	Microtus_ochrogaster
ENSGAGG00000008553	-	100	73.158	ENSMODG00000008056	-	100	73.766	Monodelphis_domestica
ENSGAGG00000008553	-	100	73.670	MGP_CAROLIEiJ_G0022516	-	97	97.101	Mus_caroli
ENSGAGG00000008553	-	99	50.663	MGP_CAROLIEiJ_G0022514	-	100	51.958	Mus_caroli
ENSGAGG00000008553	-	100	72.895	MGP_CAROLIEiJ_G0022515	Rbm4b	100	74.016	Mus_caroli
ENSGAGG00000008553	-	100	72.632	ENSMUSG00000033760	Rbm4b	91	96.403	Mus_musculus
ENSGAGG00000008553	-	100	73.404	ENSMUSG00000096370	Gm21992	100	72.775	Mus_musculus
ENSGAGG00000008553	-	100	73.404	ENSMUSG00000094936	Rbm4	100	97.093	Mus_musculus
ENSGAGG00000008553	-	100	73.670	MGP_PahariEiJ_G0014011	-	100	74.607	Mus_pahari
ENSGAGG00000008553	-	100	73.670	MGP_PahariEiJ_G0014013	-	97	97.101	Mus_pahari
ENSGAGG00000008553	-	100	72.632	MGP_PahariEiJ_G0014012	Rbm4b	100	73.753	Mus_pahari
ENSGAGG00000008553	-	100	55.325	MGP_SPRETEiJ_G0023430	-	100	56.686	Mus_spretus
ENSGAGG00000008553	-	100	55.325	MGP_SPRETEiJ_G0023428	-	100	51.697	Mus_spretus
ENSGAGG00000008553	-	100	59.736	MGP_SPRETEiJ_G0023429	-	100	61.184	Mus_spretus
ENSGAGG00000008553	-	100	75.526	ENSMPUG00000003450	RBM4B	100	75.591	Mustela_putorius_furo
ENSGAGG00000008553	-	100	73.890	ENSMPUG00000003443	RBM4	100	75.521	Mustela_putorius_furo
ENSGAGG00000008553	-	100	73.421	ENSMLUG00000001290	RBM4B	100	73.753	Myotis_lucifugus
ENSGAGG00000008553	-	99	73.158	ENSMLUG00000004076	RBM4	95	75.066	Myotis_lucifugus
ENSGAGG00000008553	-	100	72.895	ENSNGAG00000016292	Rbm4b	100	73.753	Nannospalax_galili
ENSGAGG00000008553	-	100	74.607	ENSNLEG00000035021	RBM4	98	96.377	Nomascus_leucogenys
ENSGAGG00000008553	-	100	73.684	ENSNLEG00000006213	RBM4B	97	96.403	Nomascus_leucogenys
ENSGAGG00000008553	-	100	74.346	ENSMEUG00000001445	-	100	75.457	Notamacropus_eugenii
ENSGAGG00000008553	-	63	61.633	ENSMEUG00000005739	-	100	63.821	Notamacropus_eugenii
ENSGAGG00000008553	-	100	75.000	ENSOPRG00000009158	RBM4B	100	75.066	Ochotona_princeps
ENSGAGG00000008553	-	100	73.822	ENSOPRG00000009149	RBM4	100	74.413	Ochotona_princeps
ENSGAGG00000008553	-	100	75.000	ENSODEG00000017696	-	100	75.066	Octodon_degus
ENSGAGG00000008553	-	100	62.500	ENSODEG00000001866	-	100	62.766	Octodon_degus
ENSGAGG00000008553	-	100	69.681	ENSOANG00000003143	-	84	68.883	Ornithorhynchus_anatinus
ENSGAGG00000008553	-	100	74.133	ENSOANG00000011036	-	100	73.936	Ornithorhynchus_anatinus
ENSGAGG00000008553	-	100	73.629	ENSOCUG00000004731	RBM4	100	75.260	Oryctolagus_cuniculus
ENSGAGG00000008553	-	100	75.263	ENSOCUG00000006695	LARK	100	75.328	Oryctolagus_cuniculus
ENSGAGG00000008553	-	100	74.219	ENSOGAG00000015647	RBM4	100	74.740	Otolemur_garnettii
ENSGAGG00000008553	-	100	75.263	ENSOGAG00000015648	RBM4B	100	75.328	Otolemur_garnettii
ENSGAGG00000008553	-	100	75.526	ENSOARG00000007700	RBM4	100	74.278	Ovis_aries
ENSGAGG00000008553	-	100	74.541	ENSOARG00000007759	RBM4B	100	74.607	Ovis_aries
ENSGAGG00000008553	-	100	74.211	ENSPPAG00000015125	RBM4B	97	96.403	Pan_paniscus
ENSGAGG00000008553	-	100	73.890	ENSPPRG00000003533	RBM4	97	96.377	Panthera_pardus
ENSGAGG00000008553	-	100	75.263	ENSPPRG00000003388	RBM4B	97	96.403	Panthera_pardus
ENSGAGG00000008553	-	100	68.533	ENSPTIG00000016180	RBM4	97	97.101	Panthera_tigris_altaica
ENSGAGG00000008553	-	100	75.263	ENSPTIG00000015426	RBM4B	97	96.403	Panthera_tigris_altaica
ENSGAGG00000008553	-	100	74.211	ENSPTRG00000003935	RBM4B	97	96.403	Pan_troglodytes
ENSGAGG00000008553	-	100	74.211	ENSPANG00000020672	RBM4B	97	96.403	Papio_anubis
ENSGAGG00000008553	-	100	96.257	ENSPSIG00000003430	-	100	96.257	Pelodiscus_sinensis
ENSGAGG00000008553	-	83	93.851	ENSPSIG00000003477	-	100	93.851	Pelodiscus_sinensis
ENSGAGG00000008553	-	100	72.895	ENSPEMG00000009144	Rbm4b	100	74.016	Peromyscus_maniculatus_bairdii
ENSGAGG00000008553	-	100	73.560	ENSPPYG00000003012	RBM4	100	73.890	Pongo_abelii
ENSGAGG00000008553	-	100	74.211	ENSPPYG00000003010	RBM4B	100	75.066	Pongo_abelii
ENSGAGG00000008553	-	100	74.271	ENSPCAG00000003393	-	100	75.718	Procavia_capensis
ENSGAGG00000008553	-	100	75.000	ENSPCOG00000027885	RBM4B	97	96.403	Propithecus_coquereli
ENSGAGG00000008553	-	100	74.151	ENSPVAG00000010486	RBM4	100	75.781	Pteropus_vampyrus
ENSGAGG00000008553	-	100	75.733	ENSPVAG00000010487	RBM4B	100	75.328	Pteropus_vampyrus
ENSGAGG00000008553	-	100	75.196	ENSRNOG00000050741	Rbm4	97	97.101	Rattus_norvegicus
ENSGAGG00000008553	-	100	73.158	ENSRNOG00000061795	Rbm4b	100	74.278	Rattus_norvegicus
ENSGAGG00000008553	-	100	74.211	ENSRBIG00000019394	RBM4B	97	96.403	Rhinopithecus_bieti
ENSGAGG00000008553	-	100	74.211	ENSRROG00000032850	RBM4B	97	96.403	Rhinopithecus_roxellana
ENSGAGG00000008553	-	100	73.684	ENSSBOG00000034474	RBM4B	97	95.683	Saimiri_boliviensis_boliviensis
ENSGAGG00000008553	-	100	72.441	ENSSHAG00000008386	-	100	73.037	Sarcophilus_harrisii
ENSGAGG00000008553	-	100	75.200	ENSSARG00000010710	RBM4B	100	74.803	Sorex_araneus
ENSGAGG00000008553	-	100	73.890	ENSSSCG00000032437	RBM4	100	75.521	Sus_scrofa
ENSGAGG00000008553	-	78	90.102	ENSTGUG00000016779	-	94	90.102	Taeniopygia_guttata
ENSGAGG00000008553	-	60	88.263	ENSTBEG00000003727	-	68	88.263	Tupaia_belangeri
ENSGAGG00000008553	-	100	73.684	ENSTBEG00000003748	RBM4B	100	74.541	Tupaia_belangeri
ENSGAGG00000008553	-	100	75.263	ENSTTRG00000011166	RBM4B	100	75.328	Tursiops_truncatus
ENSGAGG00000008553	-	100	73.560	ENSTTRG00000011164	RBM4	100	75.260	Tursiops_truncatus
ENSGAGG00000008553	-	100	75.789	ENSUAMG00000004745	RBM4B	100	75.853	Ursus_americanus
ENSGAGG00000008553	-	100	73.890	ENSUAMG00000014882	RBM4	97	96.377	Ursus_americanus
ENSGAGG00000008553	-	64	85.833	ENSUMAG00000011738	-	97	96.377	Ursus_maritimus
ENSGAGG00000008553	-	100	74.339	ENSVPAG00000001949	RBM4	100	74.603	Vicugna_pacos
ENSGAGG00000008553	-	100	75.263	ENSVPAG00000001950	RBM4B	100	75.328	Vicugna_pacos
ENSGAGG00000008553	-	100	75.733	ENSVVUG00000010619	RBM4B	100	75.328	Vulpes_vulpes
ENSGAGG00000008553	-	100	73.368	ENSVVUG00000010622	RBM4	100	75.000	Vulpes_vulpes